Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:54:53 (25979): wrapper (7.7.26015): starting
20:54:53 (25979): wrapper: running run_atlas (--nthreads 12)
[2025-12-16 20:54:53] Arguments: --nthreads 12
[2025-12-16 20:54:53] Threads: 12
[2025-12-16 20:54:53] Checking for CVMFS
[2025-12-16 20:54:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 20:54:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 20:54:54] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 20:54:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 20:54:54] 2.11.2.0 2984 317242 92968 154094 1 59 18438983 20275201 1 130560 1 142013374 99.974 17784199 14949 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-16 20:54:54] CVMFS is ok
[2025-12-16 20:54:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 20:54:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 20:54:54] Further information can be found at the LHC@home message board.
[2025-12-16 20:54:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 20:54:54] Checking for apptainer binary...
[2025-12-16 20:54:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 20:54:54] Running /usr/bin/apptainer --version
[2025-12-16 20:54:54] apptainer version 1.3.2-1.el7
[2025-12-16 20:54:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 20:54:55] c-205-26.aglt2.org
[2025-12-16 20:54:55] apptainer works
[2025-12-16 20:54:55] Set ATHENA_PROC_NUMBER=12
[2025-12-16 20:54:55] Set ATHENA_CORE_NUMBER=12
[2025-12-16 20:54:55] Starting ATLAS job with PandaID=6931441884
[2025-12-16 20:54:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 22:38:26]  *** The last 200 lines of the pilot log: ***
[2025-12-16 22:38:26] 2025-12-17 03:37:23,210 | INFO     | mean y: 2703810.0315789473
[2025-12-16 22:38:26] 2025-12-17 03:37:23,210 | INFO     | intersect: 33004908556.08186
[2025-12-16 22:38:26] 2025-12-17 03:37:23,210 | INFO     | chi2: 0.1004959764199752
[2025-12-16 22:38:26] 2025-12-17 03:37:23,210 | INFO     | current chi2=0.1004959764199752 (change=93.32217535692644 %)
[2025-12-16 22:38:26] 2025-12-17 03:37:23,211 | INFO     | sum of square deviations: 226022842.5
[2025-12-16 22:38:26] 2025-12-17 03:37:23,211 | INFO     | sum of deviations: -5743283956.0
[2025-12-16 22:38:26] 2025-12-17 03:37:23,211 | INFO     | mean x: 1765939864.5
[2025-12-16 22:38:26] 2025-12-17 03:37:23,211 | INFO     | mean y: 2706463.2666666666
[2025-12-16 22:38:26] 2025-12-17 03:37:23,211 | INFO     | intersect: 44875578509.56732
[2025-12-16 22:38:26] 2025-12-17 03:37:23,212 | INFO     | chi2: 0.0642136432047905
[2025-12-16 22:38:26] 2025-12-17 03:37:23,212 | INFO     | current chi2=0.0642136432047905 (change=36.10326951156722 %)
[2025-12-16 22:38:26] 2025-12-17 03:37:23,212 | INFO     | sum of square deviations: 190403570.0
[2025-12-16 22:38:26] 2025-12-17 03:37:23,212 | INFO     | sum of deviations: -2812364495.9999995
[2025-12-16 22:38:26] 2025-12-17 03:37:23,212 | INFO     | mean x: 1765940017.0
[2025-12-16 22:38:26] 2025-12-17 03:37:23,213 | INFO     | mean y: 2693884.6
[2025-12-16 22:38:26] 2025-12-17 03:37:23,213 | INFO     | intersect: 26086590346.606647
[2025-12-16 22:38:26] 2025-12-17 03:37:23,213 | INFO     | chi2: 0.04689160859639653
[2025-12-16 22:38:26] 2025-12-17 03:37:23,213 | INFO     | current chi2=0.04689160859639653 (change=26.975629700919544 %)
[2025-12-16 22:38:26] 2025-12-17 03:37:23,213 | INFO     | sum of square deviations: 158737860.0
[2025-12-16 22:38:26] 2025-12-17 03:37:23,214 | INFO     | sum of deviations: 329192477.99999994
[2025-12-16 22:38:26] 2025-12-17 03:37:23,214 | INFO     | mean x: 1765940169.5
[2025-12-16 22:38:26] 2025-12-17 03:37:23,214 | INFO     | mean y: 2678733.45
[2025-12-16 22:38:26] 2025-12-17 03:37:23,214 | INFO     | intersect: -3659549171.080431
[2025-12-16 22:38:26] 2025-12-17 03:37:23,214 | INFO     | chi2: 0.010741761302747156
[2025-12-16 22:38:26] 2025-12-17 03:37:23,214 | INFO     | current chi2=0.010741761302747156 (change=77.09235911439254 %)
[2025-12-16 22:38:26] 2025-12-17 03:37:23,214 | INFO     | sum of square deviations: 130793150.0
[2025-12-16 22:38:26] 2025-12-17 03:37:23,215 | INFO     | sum of deviations: 692575944.0
[2025-12-16 22:38:26] 2025-12-17 03:37:23,215 | INFO     | mean x: 1765940322.0
[2025-12-16 22:38:26] 2025-12-17 03:37:23,215 | INFO     | mean y: 2676929.026666667
[2025-12-16 22:38:26] 2025-12-17 03:37:23,215 | INFO     | intersect: -9348331021.74762
[2025-12-16 22:38:26] 2025-12-17 03:37:23,215 | INFO     | chi2: 9.421865096504837e-05
[2025-12-16 22:38:26] 2025-12-17 03:37:23,215 | INFO     | current chi2=9.421865096504837e-05 (change=99.12287521282984 %)
[2025-12-16 22:38:26] 2025-12-17 03:37:23,216 | INFO     | sum of square deviations: 106336877.5
[2025-12-16 22:38:26] 2025-12-17 03:37:23,216 | INFO     | sum of deviations: 502000842.0
[2025-12-16 22:38:26] 2025-12-17 03:37:23,216 | INFO     | mean x: 1765940474.5
[2025-12-16 22:38:26] 2025-12-17 03:37:23,216 | INFO     | mean y: 2678114.257142857
[2025-12-16 22:38:26] 2025-12-17 03:37:23,216 | INFO     | intersect: -8334068515.536264
[2025-12-16 22:38:26] 2025-12-17 03:37:23,216 | INFO     | chi2: 6.681361991780948e-05
[2025-12-16 22:38:26] 2025-12-17 03:37:23,217 | INFO     | current chi2=6.681361991780948e-05 (change=29.08663068993117 %)
[2025-12-16 22:38:26] 2025-12-17 03:37:23,217 | INFO     | sum of square deviations: 85136480.0
[2025-12-16 22:38:26] 2025-12-17 03:37:23,217 | INFO     | sum of deviations: 366557784.00000006
[2025-12-16 22:38:26] 2025-12-17 03:37:23,217 | INFO     | mean x: 1765940627.0
[2025-12-16 22:38:26] 2025-12-17 03:37:23,217 | INFO     | mean y: 2679088.9076923076
[2025-12-16 22:38:26] 2025-12-17 03:37:23,217 | INFO     | intersect: -7600633649.752523
[2025-12-16 22:38:26] 2025-12-17 03:37:23,218 | INFO     | chi2: 5.651146803653417e-05
[2025-12-16 22:38:26] 2025-12-17 03:37:23,218 | INFO     | current chi2=5.651146803653417e-05 (change=15.419239211927838 %)
[2025-12-16 22:38:26] 2025-12-17 03:37:23,218 | INFO     | left removable region: 70
[2025-12-16 22:38:26] 2025-12-17 03:37:23,218 | INFO     | sum of square deviations: 4279150.0
[2025-12-16 22:38:26] 2025-12-17 03:37:23,218 | INFO     | sum of deviations: 8813036.0
[2025-12-16 22:38:26] 2025-12-17 03:37:23,218 | INFO     | mean x: 1765941511.5
[2025-12-16 22:38:26] 2025-12-17 03:37:23,218 | INFO     | mean y: 2683308.3333333335
[2025-12-16 22:38:26] 2025-12-17 03:37:23,218 | INFO     | intersect: -3634325470.219396
[2025-12-16 22:38:26] 2025-12-17 03:37:23,219 | INFO     | chi2: 1.543479354765841e-05
[2025-12-16 22:38:26] 2025-12-17 03:37:23,219 | INFO     | current memory leak: 2.06 B/s (using 24 data points, chi2=0.00)
[2025-12-16 22:38:26] 2025-12-17 03:37:23,219 | INFO     | could have reported an average CPU frequency of 2122 MHz (7 samples)
[2025-12-16 22:38:26] 2025-12-17 03:37:23,219 | INFO     | ..............................
[2025-12-16 22:38:26] 2025-12-17 03:37:23,219 | INFO     | . Timing measurements:
[2025-12-16 22:38:26] 2025-12-17 03:37:23,219 | INFO     | . get job = 0 s
[2025-12-16 22:38:26] 2025-12-17 03:37:23,220 | INFO     | . initial setup = 2 s
[2025-12-16 22:38:26] 2025-12-17 03:37:23,220 | INFO     | . payload setup = 7 s
[2025-12-16 22:38:26] 2025-12-17 03:37:23,220 | INFO     | . stage-in = 0 s
[2025-12-16 22:38:26] 2025-12-17 03:37:23,220 | INFO     | . payload execution = 6095 s
[2025-12-16 22:38:26] 2025-12-17 03:37:23,220 | INFO     | . stage-out = 0 s
[2025-12-16 22:38:26] 2025-12-17 03:37:23,220 | INFO     | . log creation = 0 s
[2025-12-16 22:38:26] 2025-12-17 03:37:23,220 | INFO     | ..............................
[2025-12-16 22:38:26] 2025-12-17 03:37:23,795 | INFO     | 
[2025-12-16 22:38:26] 2025-12-17 03:37:23,795 | INFO     | job summary report
[2025-12-16 22:38:26] 2025-12-17 03:37:23,796 | INFO     | --------------------------------------------------
[2025-12-16 22:38:26] 2025-12-17 03:37:23,796 | INFO     | PanDA job id: 6931441884
[2025-12-16 22:38:26] 2025-12-17 03:37:23,796 | INFO     | task id: 47898782
[2025-12-16 22:38:26] 2025-12-17 03:37:23,796 | INFO     | errors: (none)
[2025-12-16 22:38:26] 2025-12-17 03:37:23,796 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 22:38:26] 2025-12-17 03:37:23,796 | INFO     | pilot state: finished 
[2025-12-16 22:38:26] 2025-12-17 03:37:23,797 | INFO     | transexitcode: 0
[2025-12-16 22:38:26] 2025-12-17 03:37:23,797 | INFO     | exeerrorcode: 0
[2025-12-16 22:38:26] 2025-12-17 03:37:23,797 | INFO     | exeerrordiag: 
[2025-12-16 22:38:26] 2025-12-17 03:37:23,797 | INFO     | exitcode: 0
[2025-12-16 22:38:26] 2025-12-17 03:37:23,797 | INFO     | exitmsg: OK
[2025-12-16 22:38:26] 2025-12-17 03:37:23,797 | INFO     | cpuconsumptiontime: 65669 s
[2025-12-16 22:38:26] 2025-12-17 03:37:23,797 | INFO     | nevents: 400
[2025-12-16 22:38:26] 2025-12-17 03:37:23,798 | INFO     | neventsw: 0
[2025-12-16 22:38:26] 2025-12-17 03:37:23,798 | INFO     | pid: 3873
[2025-12-16 22:38:26] 2025-12-17 03:37:23,798 | INFO     | pgrp: 3873
[2025-12-16 22:38:26] 2025-12-17 03:37:23,798 | INFO     | corecount: 12
[2025-12-16 22:38:26] 2025-12-17 03:37:23,798 | INFO     | event service: False
[2025-12-16 22:38:26] 2025-12-17 03:37:23,798 | INFO     | sizes: {0: 2283930, 5: 2284192, 11: 2284248, 6106: 2311029, 6107: 2320027, 6110: 2320083, 6115: 2320405}
[2025-12-16 22:38:26] 2025-12-17 03:37:23,799 | INFO     | --------------------------------------------------
[2025-12-16 22:38:26] 2025-12-17 03:37:23,799 | INFO     | 
[2025-12-16 22:38:26] 2025-12-17 03:37:23,799 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-16 22:38:26] 2025-12-17 03:37:23,823 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 22:38:26] 2025-12-17 03:37:23,823 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 22:38:26] 2025-12-17 03:37:23,824 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 22:38:26] 2025-12-17 03:37:23,824 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 22:38:26] 2025-12-17 03:37:23,824 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 22:38:26] 2025-12-17 03:37:23,824 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 22:38:26] 2025-12-17 03:37:23,824 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 22:38:26] 2025-12-17 03:37:23,824 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 22:38:26] 2025-12-17 03:37:23,825 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 22:38:26] 2025-12-17 03:37:23,825 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 22:38:26] 2025-12-17 03:37:23,825 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 22:38:26] 2025-12-17 03:37:23,825 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 22:38:26] 2025-12-17 03:37:23,825 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 22:38:26] 2025-12-17 03:37:23,825 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 22:38:26] 2025-12-17 03:37:23,825 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 22:38:26] 2025-12-17 03:37:23,825 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 22:38:26] 2025-12-17 03:37:23,826 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 22:38:26] 2025-12-17 03:37:23,826 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 22:38:26] 2025-12-17 03:37:23,826 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 22:38:26] 2025-12-17 03:37:23,826 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 22:38:26] 2025-12-17 03:37:23,826 | INFO     | job 6931441884 has completed (purged errors)
[2025-12-16 22:38:26] 2025-12-17 03:37:23,826 | INFO     | overall cleanup function is called
[2025-12-16 22:38:26] 2025-12-17 03:37:24,176 | INFO     | PID=29786 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 22:38:26] 2025-12-17 03:37:24,829 | INFO     | --- collectZombieJob: --- 10, [3873]
[2025-12-16 22:38:26] 2025-12-17 03:37:24,830 | INFO     | zombie collector waiting for pid 3873
[2025-12-16 22:38:26] 2025-12-17 03:37:24,830 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 22:38:26] 2025-12-17 03:37:24,830 | INFO     | collected zombie processes
[2025-12-16 22:38:26] 2025-12-17 03:37:24,830 | INFO     | will attempt to kill all subprocesses of pid=3873
[2025-12-16 22:38:26] 2025-12-17 03:37:24,920 | INFO     | process IDs to be killed: [3873] (in reverse order)
[2025-12-16 22:38:26] 2025-12-17 03:37:24,974 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 22:38:26] 2025-12-17 03:37:24,974 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 22:38:26] 2025-12-17 03:37:24,977 | INFO     | did not find any defunct processes belonging to 3873
[2025-12-16 22:38:26] 2025-12-17 03:37:24,980 | INFO     | did not find any defunct processes belonging to 3873
[2025-12-16 22:38:26] 2025-12-17 03:37:24,980 | INFO     | ready for new job
[2025-12-16 22:38:26] 2025-12-17 03:37:24,980 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 22:38:26] 2025-12-17 03:37:24,981 | INFO     | ***************************************
[2025-12-16 22:38:26] 2025-12-17 03:37:24,981 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 22:38:26] 2025-12-17 03:37:24,981 | INFO     | ***************************************
[2025-12-16 22:38:26] 2025-12-17 03:37:24,981 | INFO     | 
[2025-12-16 22:38:26] 2025-12-17 03:37:24,982 | INFO     | architecture information:
[2025-12-16 22:38:26] 2025-12-17 03:37:24,982 | INFO     | executing command: cat /etc/os-release
[2025-12-16 22:38:26] 2025-12-17 03:37:24,999 | INFO     | cat /etc/os-release:
[2025-12-16 22:38:26] NAME="CentOS Linux"
[2025-12-16 22:38:26] VERSION="7 (Core)"
[2025-12-16 22:38:26] ID="centos"
[2025-12-16 22:38:26] ID_LIKE="rhel fedora"
[2025-12-16 22:38:26] VERSION_ID="7"
[2025-12-16 22:38:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 22:38:26] ANSI_COLOR="0;31"
[2025-12-16 22:38:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 22:38:26] HOME_URL="https://www.centos.org/"
[2025-12-16 22:38:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 22:38:26] 
[2025-12-16 22:38:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 22:38:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 22:38:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 22:38:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 22:38:26] 
[2025-12-16 22:38:26] 2025-12-17 03:37:24,999 | INFO     | ***************************************
[2025-12-16 22:38:26] 2025-12-17 03:37:25,502 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-16 22:38:26] 2025-12-17 03:37:25,520 | INFO     | sufficient remaining disk space (29358030848 B)
[2025-12-16 22:38:26] 2025-12-17 03:37:25,520 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 22:38:26] 2025-12-17 03:37:25,520 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 22:38:26] 2025-12-17 03:37:25,521 | INFO     | update_server=False
[2025-12-16 22:38:26] 2025-12-17 03:37:25,521 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 22:38:26] 2025-12-17 03:37:25,521 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 22:38:26] 2025-12-17 03:37:25,522 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 22:38:26] 2025-12-17 03:37:25,522 | INFO     | aborting loop
[2025-12-16 22:38:26] 2025-12-17 03:37:25,913 | INFO     | all job control threads have been joined
[2025-12-16 22:38:26] 2025-12-17 03:37:25,921 | INFO     | all payload control threads have been joined
[2025-12-16 22:38:26] 2025-12-17 03:37:26,526 | INFO     | [job] retrieve thread has finished
[2025-12-16 22:38:26] 2025-12-17 03:37:26,527 | INFO     | [job] job monitor thread has finished
[2025-12-16 22:38:26] 2025-12-17 03:37:26,615 | INFO     | all data control threads have been joined
[2025-12-16 22:38:26] 2025-12-17 03:37:26,795 | INFO     | [payload] failed_post thread has finished
[2025-12-16 22:38:26] 2025-12-17 03:37:26,867 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 22:38:26] 2025-12-17 03:37:26,880 | INFO     | [data] copytool_in thread has finished
[2025-12-16 22:38:26] 2025-12-17 03:37:26,919 | INFO     | [job] control thread has finished
[2025-12-16 22:38:26] 2025-12-17 03:37:26,926 | INFO     | [payload] control thread has finished
[2025-12-16 22:38:26] 2025-12-17 03:37:26,983 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 22:38:26] 2025-12-17 03:37:27,200 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 22:38:26] 2025-12-17 03:37:27,527 | INFO     | [data] copytool_out thread has finished
[2025-12-16 22:38:26] 2025-12-17 03:37:27,621 | INFO     | [data] control thread has finished
[2025-12-16 22:38:26] 2025-12-17 03:37:27,775 | INFO     | [job] validate thread has finished
[2025-12-16 22:38:26] 2025-12-17 03:37:27,779 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 22:38:26] 2025-12-17 03:37:27,865 | INFO     | [payload] validate_post thread has finished
[2025-12-16 22:38:26] 2025-12-17 03:37:28,311 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 22:38:26] 2025-12-17 03:37:28,676 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 22:38:26] 2025-12-17 03:37:29,317 | INFO     | [job] queue monitor thread has finished
[2025-12-16 22:38:26] 2025-12-17 03:37:32,682 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 22:38:26] 2025-12-17 03:37:56,363 | INFO     | PID=29786 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 22:38:26] 2025-12-17 03:37:56,363 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 22:38:26] 2025-12-17 03:37:56,364 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 22:38:26] 2025-12-17 03:37:56,364 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 22:38:26] 2025-12-17 03:38:20,563 | INFO     | [monitor] cgroup control has ended
[2025-12-16 22:38:26] 2025-12-17 03:38:21,455 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139861223589696)>', '<ExcThread(monitor, started 139860929124096)>']
[2025-12-16 22:38:26] 2025-12-17 03:38:21,468 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 22:38:26] 2025-12-17 03:38:21,469 | INFO     | [monitor] control thread has ended
[2025-12-16 22:38:26] 2025-12-17 03:38:26,480 | INFO     | all workflow threads have been joined
[2025-12-16 22:38:26] 2025-12-17 03:38:26,480 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 22:38:26] 2025-12-17 03:38:26,481 | INFO     | traces error code: 0
[2025-12-16 22:38:26] 2025-12-17 03:38:26,481 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 22:38:26] 2025-12-17 03:38:26,563 [wrapper] ==== pilot stdout END ====
[2025-12-16 22:38:26] 2025-12-17 03:38:26,567 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 22:38:26] 2025-12-17 03:38:26,571 [wrapper] pilotpid: 29786
[2025-12-16 22:38:26] 2025-12-17 03:38:26,574 [wrapper] Pilot exit status: 0
[2025-12-16 22:38:26] 2025-12-17 03:38:26,592 [wrapper] pandaids: 6931441884
[2025-12-16 22:38:26] 2025-12-17 03:38:26,638 [wrapper] cleanup supervisor_pilot  3725 29787
[2025-12-16 22:38:26] 2025-12-17 03:38:26,641 [wrapper] Test setup, not cleaning
[2025-12-16 22:38:26] 2025-12-17 03:38:26,645 [wrapper] apfmon messages muted
[2025-12-16 22:38:26] 2025-12-17 03:38:26,649 [wrapper] ==== wrapper stdout END ====
[2025-12-16 22:38:26] 2025-12-17 03:38:26,653 [wrapper] ==== wrapper stderr END ====
[2025-12-16 22:38:26]  *** Error codes and diagnostics ***
[2025-12-16 22:38:26]     "exeErrorCode": 0,
[2025-12-16 22:38:26]     "exeErrorDiag": "",
[2025-12-16 22:38:26]     "pilotErrorCode": 0,
[2025-12-16 22:38:26]     "pilotErrorDiag": "",
[2025-12-16 22:38:26]  *** Listing of results directory ***
[2025-12-16 22:38:26] total 410268
[2025-12-16 22:38:26] -rw-r--r-- 1 boincer umatlas      5112 Dec 16 10:02 queuedata.json
[2025-12-16 22:38:26] -rw-r--r-- 1 boincer umatlas    579449 Dec 16 10:02 pilot3.tar.gz
[2025-12-16 22:38:26] -rwx------ 1 boincer umatlas     36322 Dec 16 10:02 runpilot2-wrapper.sh
[2025-12-16 22:38:26] -rw-r--r-- 1 boincer umatlas       100 Dec 16 20:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 22:38:26] -rwxr-xr-x 1 boincer umatlas      7986 Dec 16 20:54 run_atlas
[2025-12-16 22:38:26] -rw-r--r-- 1 boincer umatlas       105 Dec 16 20:54 job.xml
[2025-12-16 22:38:26] -rw-r--r-- 2 boincer umatlas 215047868 Dec 16 20:54 EVNT.47898779._000145.pool.root.1
[2025-12-16 22:38:26] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 20:54 start_atlas.sh
[2025-12-16 22:38:26] drwxrwx--x 2 boincer umatlas      4096 Dec 16 20:54 shared
[2025-12-16 22:38:26] -rw-r--r-- 2 boincer umatlas    592397 Dec 16 20:54 input.tar.gz
[2025-12-16 22:38:26] -rw-r--r-- 1 boincer umatlas         0 Dec 16 20:54 boinc_lockfile
[2025-12-16 22:38:26] -rw-r--r-- 1 boincer umatlas      2522 Dec 16 20:54 pandaJob.out
[2025-12-16 22:38:26] -rw------- 1 boincer umatlas        57 Dec 16 20:54 setup.sh.local
[2025-12-16 22:38:26] -rw------- 1 boincer umatlas    987393 Dec 16 20:55 agis_schedconf.cvmfs.json
[2025-12-16 22:38:26] -rw------- 1 boincer umatlas   1516240 Dec 16 20:55 agis_ddmendpoints.agis.ALL.json
[2025-12-16 22:38:26] drwx------ 5 boincer umatlas      4096 Dec 16 20:55 pilot3
[2025-12-16 22:38:26] -rw-r--r-- 1 boincer umatlas      5953 Dec 16 22:30 init_data.xml
[2025-12-16 22:38:26] -rw------- 1 boincer umatlas 198588015 Dec 16 22:36 HITS.47898782._005044.pool.root.1
[2025-12-16 22:38:26] -rw-r--r-- 1 boincer umatlas       530 Dec 16 22:37 boinc_task_state.xml
[2025-12-16 22:38:26] -rw------- 1 boincer umatlas      1047 Dec 16 22:37 memory_monitor_summary.json
[2025-12-16 22:38:26] -rw------- 1 boincer umatlas    410464 Dec 16 22:37 log.47898782._005044.job.log.tgz.1
[2025-12-16 22:38:26] -rw------- 1 boincer umatlas      7841 Dec 16 22:37 heartbeat.json
[2025-12-16 22:38:26] -rw------- 1 boincer umatlas        95 Dec 16 22:37 pilot_heartbeat.json
[2025-12-16 22:38:26] -rw-r--r-- 1 boincer umatlas      8192 Dec 16 22:38 boinc_mmap_file
[2025-12-16 22:38:26] -rw-r--r-- 1 boincer umatlas        27 Dec 16 22:38 wrapper_checkpoint.txt
[2025-12-16 22:38:26] -rw------- 1 boincer umatlas      4746 Dec 16 22:38 pilotlog.txt
[2025-12-16 22:38:26] -rw------- 1 boincer umatlas    875442 Dec 16 22:38 log.47898782._005044.job.log.1
[2025-12-16 22:38:26] -rw------- 1 boincer umatlas       357 Dec 16 22:38 output.list
[2025-12-16 22:38:26] -rw-r--r-- 1 boincer umatlas       620 Dec 16 22:38 runtime_log
[2025-12-16 22:38:26] -rw------- 1 boincer umatlas   1300480 Dec 16 22:38 result.tar.gz
[2025-12-16 22:38:26] -rw------- 1 boincer umatlas       659 Dec 16 22:38 zj7MDmYklp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmDjVKDmJMlPyn.diag
[2025-12-16 22:38:26] -rw-r--r-- 1 boincer umatlas      9344 Dec 16 22:38 runtime_log.err
[2025-12-16 22:38:26] -rw-r--r-- 1 boincer umatlas     20998 Dec 16 22:38 stderr.txt
[2025-12-16 22:38:26] HITS file was successfully produced:
[2025-12-16 22:38:26] -rw------- 1 boincer umatlas 198588015 Dec 16 22:36 shared/HITS.pool.root.1
[2025-12-16 22:38:26]  *** Contents of shared directory: ***
[2025-12-16 22:38:26] total 405812
[2025-12-16 22:38:26] -rw-r--r-- 2 boincer umatlas 215047868 Dec 16 20:54 ATLAS.root_0
[2025-12-16 22:38:26] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 20:54 start_atlas.sh
[2025-12-16 22:38:26] -rw-r--r-- 2 boincer umatlas    592397 Dec 16 20:54 input.tar.gz
[2025-12-16 22:38:26] -rw------- 1 boincer umatlas 198588015 Dec 16 22:36 HITS.pool.root.1
[2025-12-16 22:38:26] -rw------- 1 boincer umatlas   1300480 Dec 16 22:38 result.tar.gz
22:38:28 (25979): run_atlas exited; CPU time 65646.217752
22:38:28 (25979): called boinc_finish(0)

</stderr_txt>
]]>

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