Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:31:26 (1106891): wrapper (7.7.26015): starting
21:31:26 (1106891): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 21:31:26] Arguments: --nthreads 8
[2025-12-16 21:31:26] Threads: 8
[2025-12-16 21:31:26] Checking for CVMFS
[2025-12-16 21:31:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 21:31:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 21:31:26] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 21:31:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 21:31:27] 2.13.3.0 12601 59694 376008 154095 2 579 20244177 32935936 31094 16776704 0 280900917 99.459 379065344 32815 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-16 21:31:27] CVMFS is ok
[2025-12-16 21:31:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 21:31:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 21:31:27] Further information can be found at the LHC@home message board.
[2025-12-16 21:31:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 21:31:27] Checking for apptainer binary...
[2025-12-16 21:31:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 21:31:27] Running /usr/bin/apptainer --version
[2025-12-16 21:31:28] apptainer version 1.4.5-2.el9
[2025-12-16 21:31:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 21:31:28] c6-12-27-4.aglt2.org
[2025-12-16 21:31:28] apptainer works
[2025-12-16 21:31:28] Set ATHENA_PROC_NUMBER=8
[2025-12-16 21:31:28] Set ATHENA_CORE_NUMBER=8
[2025-12-16 21:31:28] Starting ATLAS job with PandaID=6931443307
[2025-12-16 21:31:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 04:01:32]  *** The last 200 lines of the pilot log: ***
[2025-12-17 04:01:32] 2025-12-17 08:58:43,589 | INFO     | monitor loop #1327: job 0:6931443307 is in state 'finished'
[2025-12-17 04:01:32] 2025-12-17 08:58:43,589 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 04:01:32] 2025-12-17 08:58:43,716 | INFO     | time since job start (23168s) is within the limit (174528.0s)
[2025-12-17 04:01:32] 2025-12-17 08:58:45,728 | INFO     | time since job start (23170s) is within the limit (174528.0s)
[2025-12-17 04:01:32] 2025-12-17 08:58:46,141 | INFO     | monitor loop #1328: job 0:6931443307 is in state 'finished'
[2025-12-17 04:01:32] 2025-12-17 08:58:46,141 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 04:01:32] 2025-12-17 08:58:47,547 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-17 04:01:32] 2025-12-17 08:58:47,602 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2658.5729062500013
[2025-12-17 04:01:32] 2025-12-17 08:58:47,683 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6931443307/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 04:01:32] 2025-12-17 08:58:47,684 | INFO     | extracted standard info from prmon json
[2025-12-17 04:01:32] 2025-12-17 08:58:47,684 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 04:01:32] 2025-12-17 08:58:47,684 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 04:01:32] 2025-12-17 08:58:47,694 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 04:01:32] 2025-12-17 08:58:47,694 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 04:01:32] 2025-12-17 08:58:47,727 | INFO     | fitting pss+swap vs Time
[2025-12-17 04:01:32] 2025-12-17 08:58:47,728 | INFO     | sum of square deviations: 16615602648.870049
[2025-12-17 04:01:32] 2025-12-17 08:58:47,747 | INFO     | time since job start (23172s) is within the limit (174528.0s)
[2025-12-17 04:01:32] 2025-12-17 08:58:47,748 | INFO     | sum of deviations: 5101710440.122021
[2025-12-17 04:01:32] 2025-12-17 08:58:47,748 | INFO     | mean x: 1765950358.6737401
[2025-12-17 04:01:32] 2025-12-17 08:58:47,748 | INFO     | mean y: 2490687.204244032
[2025-12-17 04:01:32] 2025-12-17 08:58:47,749 | INFO     | intersect: -539732641.7940414
[2025-12-17 04:01:32] 2025-12-17 08:58:47,749 | INFO     | chi2: 3.4264144549128335
[2025-12-17 04:01:32] 2025-12-17 08:58:47,750 | INFO     | sum of square deviations: 15963310004.932703
[2025-12-17 04:01:32] 2025-12-17 08:58:47,767 | INFO     | sum of deviations: 31133755810.145157
[2025-12-17 04:01:32] 2025-12-17 08:58:47,768 | INFO     | mean x: 1765950206.1801076
[2025-12-17 04:01:32] 2025-12-17 08:58:47,768 | INFO     | mean y: 2496707.370967742
[2025-12-17 04:01:32] 2025-12-17 08:58:47,768 | INFO     | intersect: -3441692654.0520577
[2025-12-17 04:01:32] 2025-12-17 08:58:47,768 | INFO     | chi2: 2.588148289946207
[2025-12-17 04:01:32] 2025-12-17 08:58:47,769 | INFO     | current chi2=2.588148289946207 (change=24.464821054111262 %)
[2025-12-17 04:01:32] 2025-12-17 08:58:47,769 | INFO     | right removable region: 371
[2025-12-17 04:01:32] 2025-12-17 08:58:47,772 | INFO     | sum of square deviations: 15963178061.569855
[2025-12-17 04:01:32] 2025-12-17 08:58:47,776 | INFO     | sum of deviations: -79208407105.33333
[2025-12-17 04:01:32] 2025-12-17 08:58:47,784 | INFO     | mean x: 1765950511.1827958
[2025-12-17 04:01:32] 2025-12-17 08:58:47,784 | INFO     | mean y: 2510327.1666666665
[2025-12-17 04:01:32] 2025-12-17 08:58:47,784 | INFO     | intersect: 8765059142.83041
[2025-12-17 04:01:32] 2025-12-17 08:58:47,785 | INFO     | chi2: 1.229165557614515
[2025-12-17 04:01:32] 2025-12-17 08:58:47,785 | INFO     | current chi2=1.229165557614515 (change=64.1267694323399 %)
[2025-12-17 04:01:32] 2025-12-17 08:58:47,786 | INFO     | sum of square deviations: 15328078938.588629
[2025-12-17 04:01:32] 2025-12-17 08:58:47,793 | INFO     | sum of deviations: -89314311955.30789
[2025-12-17 04:01:32] 2025-12-17 08:58:47,793 | INFO     | mean x: 1765950663.6893733
[2025-12-17 04:01:32] 2025-12-17 08:58:47,794 | INFO     | mean y: 2512738.356948229
[2025-12-17 04:01:32] 2025-12-17 08:58:47,794 | INFO     | intersect: 10292430288.12647
[2025-12-17 04:01:32] 2025-12-17 08:58:47,794 | INFO     | chi2: 1.170276190819719
[2025-12-17 04:01:32] 2025-12-17 08:58:47,794 | INFO     | current chi2=1.170276190819719 (change=4.791003655283404 %)
[2025-12-17 04:01:32] 2025-12-17 08:58:47,794 | INFO     | left removable region: 20
[2025-12-17 04:01:32] 2025-12-17 08:58:47,795 | INFO     | sum of square deviations: 13409504490.774927
[2025-12-17 04:01:32] 2025-12-17 08:58:47,803 | INFO     | sum of deviations: -31423647298.67806
[2025-12-17 04:01:32] 2025-12-17 08:58:47,803 | INFO     | mean x: 1765950785.7065527
[2025-12-17 04:01:32] 2025-12-17 08:58:47,803 | INFO     | mean y: 2511175.3817663817
[2025-12-17 04:01:32] 2025-12-17 08:58:47,804 | INFO     | intersect: 4140815814.0835376
[2025-12-17 04:01:32] 2025-12-17 08:58:47,806 | INFO     | chi2: 0.2041533653020973
[2025-12-17 04:01:32] 2025-12-17 08:58:47,807 | INFO     | current memory leak: -2.34 B/s (using 351 data points, chi2=0.20)
[2025-12-17 04:01:32] 2025-12-17 08:58:47,807 | INFO     | could have reported an average CPU frequency of 2654 MHz (16 samples)
[2025-12-17 04:01:32] 2025-12-17 08:58:47,807 | INFO     | ..............................
[2025-12-17 04:01:32] 2025-12-17 08:58:47,807 | INFO     | . Timing measurements:
[2025-12-17 04:01:32] 2025-12-17 08:58:47,808 | INFO     | . get job = 0 s
[2025-12-17 04:01:32] 2025-12-17 08:58:47,808 | INFO     | . initial setup = 6 s
[2025-12-17 04:01:32] 2025-12-17 08:58:47,808 | INFO     | . payload setup = 41 s
[2025-12-17 04:01:32] 2025-12-17 08:58:47,808 | INFO     | . stage-in = 0 s
[2025-12-17 04:01:32] 2025-12-17 08:58:47,808 | INFO     | . payload execution = 23014 s
[2025-12-17 04:01:32] 2025-12-17 08:58:47,808 | INFO     | . stage-out = 4 s
[2025-12-17 04:01:32] 2025-12-17 08:58:47,808 | INFO     | . log creation = 1 s
[2025-12-17 04:01:32] 2025-12-17 08:58:47,808 | INFO     | ..............................
[2025-12-17 04:01:32] 2025-12-17 08:58:47,974 | INFO     | 
[2025-12-17 04:01:32] 2025-12-17 08:58:47,974 | INFO     | job summary report
[2025-12-17 04:01:32] 2025-12-17 08:58:47,974 | INFO     | --------------------------------------------------
[2025-12-17 04:01:32] 2025-12-17 08:58:47,974 | INFO     | PanDA job id: 6931443307
[2025-12-17 04:01:32] 2025-12-17 08:58:47,974 | INFO     | task id: 47898763
[2025-12-17 04:01:32] 2025-12-17 08:58:47,975 | INFO     | errors: (none)
[2025-12-17 04:01:32] 2025-12-17 08:58:47,975 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 04:01:32] 2025-12-17 08:58:47,975 | INFO     | pilot state: finished 
[2025-12-17 04:01:32] 2025-12-17 08:58:47,975 | INFO     | transexitcode: 0
[2025-12-17 04:01:32] 2025-12-17 08:58:47,975 | INFO     | exeerrorcode: 0
[2025-12-17 04:01:32] 2025-12-17 08:58:47,975 | INFO     | exeerrordiag: 
[2025-12-17 04:01:32] 2025-12-17 08:58:47,975 | INFO     | exitcode: 0
[2025-12-17 04:01:32] 2025-12-17 08:58:47,975 | INFO     | exitmsg: OK
[2025-12-17 04:01:32] 2025-12-17 08:58:47,975 | INFO     | cpuconsumptiontime: 59620 s
[2025-12-17 04:01:32] 2025-12-17 08:58:47,975 | INFO     | nevents: 400
[2025-12-17 04:01:32] 2025-12-17 08:58:47,975 | INFO     | neventsw: 0
[2025-12-17 04:01:32] 2025-12-17 08:58:47,975 | INFO     | pid: 1133627
[2025-12-17 04:01:32] 2025-12-17 08:58:47,975 | INFO     | pgrp: 1133627
[2025-12-17 04:01:32] 2025-12-17 08:58:47,975 | INFO     | corecount: 8
[2025-12-17 04:01:32] 2025-12-17 08:58:47,976 | INFO     | event service: False
[2025-12-17 04:01:32] 2025-12-17 08:58:47,976 | INFO     | sizes: {0: 2283787, 1: 2283986, 12: 2283986, 24: 2284014, 33: 2284304, 35: 2284360, 23064: 2318888, 23069: 2327886, 23072: 2327942, 23108: 2328136}
[2025-12-17 04:01:32] 2025-12-17 08:58:47,976 | INFO     | --------------------------------------------------
[2025-12-17 04:01:32] 2025-12-17 08:58:47,976 | INFO     | 
[2025-12-17 04:01:32] 2025-12-17 08:58:47,976 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-12-17 04:01:32] 2025-12-17 08:58:48,079 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 04:01:32] 2025-12-17 08:58:48,080 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 04:01:32] 2025-12-17 08:58:48,080 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 04:01:32] 2025-12-17 08:58:48,080 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 04:01:32] 2025-12-17 08:58:48,080 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 04:01:32] 2025-12-17 08:58:48,080 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 04:01:32] 2025-12-17 08:58:48,080 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 04:01:32] 2025-12-17 08:58:48,080 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 04:01:32] 2025-12-17 08:58:48,080 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 04:01:32] 2025-12-17 08:58:48,080 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 04:01:32] 2025-12-17 08:58:48,081 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 04:01:32] 2025-12-17 08:58:48,081 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 04:01:32] 2025-12-17 08:58:48,081 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 04:01:32] 2025-12-17 08:58:48,081 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 04:01:32] 2025-12-17 08:58:48,081 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 04:01:32] 2025-12-17 08:58:48,081 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 04:01:32] 2025-12-17 08:58:48,081 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 04:01:32] 2025-12-17 08:58:48,081 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 04:01:32] 2025-12-17 08:58:48,081 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 04:01:32] 2025-12-17 08:58:48,081 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 04:01:32] 2025-12-17 08:58:48,081 | INFO     | job 6931443307 has completed (purged errors)
[2025-12-17 04:01:32] 2025-12-17 08:58:48,082 | INFO     | overall cleanup function is called
[2025-12-17 04:01:32] 2025-12-17 08:58:49,097 | INFO     | --- collectZombieJob: --- 10, [1133627]
[2025-12-17 04:01:32] 2025-12-17 08:58:49,097 | INFO     | zombie collector waiting for pid 1133627
[2025-12-17 04:01:32] 2025-12-17 08:58:49,097 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 04:01:32] 2025-12-17 08:58:49,097 | INFO     | collected zombie processes
[2025-12-17 04:01:32] 2025-12-17 08:58:49,098 | INFO     | will attempt to kill all subprocesses of pid=1133627
[2025-12-17 04:01:32] 2025-12-17 08:58:50,073 | INFO     | process IDs to be killed: [1133627] (in reverse order)
[2025-12-17 04:01:32] 2025-12-17 08:58:50,395 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 04:01:32] 2025-12-17 08:58:50,395 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 04:01:32] 2025-12-17 08:58:50,433 | INFO     | did not find any defunct processes belonging to 1133627
[2025-12-17 04:01:32] 2025-12-17 08:58:50,460 | INFO     | did not find any defunct processes belonging to 1133627
[2025-12-17 04:01:32] 2025-12-17 08:58:50,460 | INFO     | ready for new job
[2025-12-17 04:01:32] 2025-12-17 08:58:50,460 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 04:01:32] 2025-12-17 08:58:50,465 | INFO     | ***************************************
[2025-12-17 04:01:32] 2025-12-17 08:58:50,465 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 04:01:32] 2025-12-17 08:58:50,465 | INFO     | ***************************************
[2025-12-17 04:01:32] 2025-12-17 08:58:50,465 | INFO     | 
[2025-12-17 04:01:32] 2025-12-17 08:58:50,471 | INFO     | architecture information:
[2025-12-17 04:01:32] 2025-12-17 08:58:50,473 | INFO     | executing command: cat /etc/os-release
[2025-12-17 04:01:32] 2025-12-17 08:58:50,534 | INFO     | cat /etc/os-release:
[2025-12-17 04:01:32] NAME="CentOS Linux"
[2025-12-17 04:01:32] VERSION="7 (Core)"
[2025-12-17 04:01:32] ID="centos"
[2025-12-17 04:01:32] ID_LIKE="rhel fedora"
[2025-12-17 04:01:32] VERSION_ID="7"
[2025-12-17 04:01:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 04:01:32] ANSI_COLOR="0;31"
[2025-12-17 04:01:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 04:01:32] HOME_URL="https://www.centos.org/"
[2025-12-17 04:01:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 04:01:32] 
[2025-12-17 04:01:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 04:01:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 04:01:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 04:01:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 04:01:32] 
[2025-12-17 04:01:32] 2025-12-17 08:58:50,535 | INFO     | ***************************************
[2025-12-17 04:01:32] 2025-12-17 08:58:51,040 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-12-17 04:01:32] 2025-12-17 08:58:51,115 | INFO     | sufficient remaining disk space (92635398144 B)
[2025-12-17 04:01:32] 2025-12-17 08:58:51,116 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 04:01:32] 2025-12-17 08:58:51,116 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 04:01:32] 2025-12-17 08:58:51,116 | INFO     | update_server=False
[2025-12-17 04:01:32] 2025-12-17 08:58:51,116 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 04:01:32] 2025-12-17 08:58:51,117 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 04:01:32] 2025-12-17 08:58:51,120 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 04:01:32] 2025-12-17 08:58:51,170 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-17 04:01:32] 2025-12-17 08:58:51,170 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-17 04:01:32] 2025-12-17 08:58:51,170 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 04:01:32] 2025-12-17 08:58:51,171 | INFO     | will abort loop
[2025-12-17 04:01:32] 2025-12-17 08:58:51,331 | INFO     | all job control threads have been joined
[2025-12-17 04:01:32] 2025-12-17 08:58:51,868 | INFO     | all data control threads have been joined
[2025-12-17 04:01:32] 2025-12-17 08:58:52,122 | INFO     | [job] retrieve thread has finished
[2025-12-17 04:01:32] 2025-12-17 08:58:52,147 | INFO     | [job] validate thread has finished
[2025-12-17 04:01:32] 2025-12-17 08:58:52,164 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 04:01:32] 2025-12-17 08:58:52,173 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 04:01:32] 2025-12-17 08:58:52,176 | INFO     | [job] job monitor thread has finished
[2025-12-17 04:01:32] 2025-12-17 08:58:52,310 | INFO     | [data] copytool_in thread has finished
[2025-12-17 04:01:32] 2025-12-17 08:58:52,337 | INFO     | [job] control thread has finished
[2025-12-17 04:01:32] 2025-12-17 08:58:52,376 | INFO     | all payload control threads have been joined
[2025-12-17 04:01:32] 2025-12-17 08:58:52,419 | INFO     | [payload] validate_post thread has finished
[2025-12-17 04:01:32] 2025-12-17 08:58:52,456 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 04:01:32] 2025-12-17 08:58:52,544 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 04:01:32] 2025-12-17 08:58:52,874 | INFO     | [data] control thread has finished
[2025-12-17 04:01:32] 2025-12-17 08:58:53,005 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 04:01:32] 2025-12-17 08:58:53,134 | INFO     | [data] copytool_out thread has finished
[2025-12-17 04:01:32] 2025-12-17 08:58:53,257 | INFO     | [payload] failed_post thread has finished
[2025-12-17 04:01:32] 2025-12-17 08:58:53,382 | INFO     | [payload] control thread has finished
[2025-12-17 04:01:32] 2025-12-17 08:58:54,011 | INFO     | [job] queue monitor thread has finished
[2025-12-17 04:01:32] 2025-12-17 08:58:55,135 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 04:01:32] 2025-12-17 08:59:16,908 | INFO     | [monitor] cgroup control has ended
[2025-12-17 04:01:32] 2025-12-17 08:59:18,830 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139709138904896)>', '<ExcThread(monitor, started 139708499748608)>']
[2025-12-17 04:01:32] 2025-12-17 08:59:22,245 | INFO     | PID=1115941 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-17 04:01:32] 2025-12-17 08:59:22,245 | INFO     | .. there are 33 such processes running
[2025-12-17 04:01:32] 2025-12-17 08:59:22,245 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 04:01:32] 2025-12-17 08:59:22,245 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 04:01:32] 2025-12-17 08:59:22,246 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 04:01:32] 2025-12-17 08:59:22,246 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 04:01:32] 2025-12-17 08:59:22,246 | INFO     | [monitor] control thread has ended
[2025-12-17 04:01:32] 2025-12-17 08:59:23,856 | INFO     | all workflow threads have been joined
[2025-12-17 04:01:32] 2025-12-17 08:59:23,856 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 04:01:32] 2025-12-17 08:59:23,857 | INFO     | traces error code: 0
[2025-12-17 04:01:32] 2025-12-17 08:59:23,857 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 04:01:32] 2025-12-17 08:59:24,688 [wrapper] ==== pilot stdout END ====
[2025-12-17 04:01:32] 2025-12-17 08:59:24,717 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 04:01:32] 2025-12-17 08:59:24,724 [wrapper] pilotpid: 1115941
[2025-12-17 04:01:32] 2025-12-17 08:59:24,731 [wrapper] Pilot exit status: 0
[2025-12-17 04:01:32] 2025-12-17 08:59:24,790 [wrapper] pandaids: 6931443307
[2025-12-17 04:01:32] 2025-12-17 08:59:25,891 [wrapper] cleanup supervisor_pilot 2584885 1115942
[2025-12-17 04:01:32] 2025-12-17 08:59:25,919 [wrapper] Test setup, not cleaning
[2025-12-17 04:01:32] 2025-12-17 08:59:25,949 [wrapper] apfmon messages muted
[2025-12-17 04:01:32] 2025-12-17 08:59:25,997 [wrapper] ==== wrapper stdout END ====
[2025-12-17 04:01:32] 2025-12-17 08:59:26,026 [wrapper] ==== wrapper stderr END ====
[2025-12-17 04:01:32]  *** Error codes and diagnostics ***
[2025-12-17 04:01:32]     "exeErrorCode": 0,
[2025-12-17 04:01:32]     "exeErrorDiag": "",
[2025-12-17 04:01:32]     "pilotErrorCode": 0,
[2025-12-17 04:01:32]     "pilotErrorDiag": "",
[2025-12-17 04:01:32]  *** Listing of results directory ***
[2025-12-17 04:01:32] total 441528
[2025-12-17 04:01:32] -rw-r--r--. 1 boincer umatlas      5112 Dec 16 10:02 queuedata.json
[2025-12-17 04:01:32] -rw-r--r--. 1 boincer umatlas    579449 Dec 16 10:02 pilot3.tar.gz
[2025-12-17 04:01:32] -rwx------. 1 boincer umatlas     36322 Dec 16 10:02 runpilot2-wrapper.sh
[2025-12-17 04:01:32] -rw-r--r--. 1 boincer umatlas       100 Dec 16 21:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 04:01:32] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 16 21:31 run_atlas
[2025-12-17 04:01:32] -rw-r--r--. 1 boincer umatlas       105 Dec 16 21:31 job.xml
[2025-12-17 04:01:32] -rw-r--r--. 2 boincer umatlas 223841825 Dec 16 21:31 EVNT.47898761._000778.pool.root.1
[2025-12-17 04:01:32] -rw-r--r--. 2 boincer umatlas     15847 Dec 16 21:31 start_atlas.sh
[2025-12-17 04:01:32] drwxrwx--x. 2 boincer umatlas      4096 Dec 16 21:31 shared
[2025-12-17 04:01:32] -rw-r--r--. 2 boincer umatlas    592393 Dec 16 21:31 input.tar.gz
[2025-12-17 04:01:32] -rw-r--r--. 1 boincer umatlas         0 Dec 16 21:31 boinc_lockfile
[2025-12-17 04:01:32] -rw-r--r--. 1 boincer umatlas      2508 Dec 16 21:31 pandaJob.out
[2025-12-17 04:01:32] -rw-------. 1 boincer umatlas        57 Dec 16 21:31 setup.sh.local
[2025-12-17 04:01:32] -rw-------. 1 boincer umatlas    987409 Dec 16 21:32 agis_schedconf.cvmfs.json
[2025-12-17 04:01:32] drwx------. 5 boincer umatlas      4096 Dec 16 21:32 pilot3
[2025-12-17 04:01:32] -rw-------. 1 boincer umatlas 217667185 Dec 17 03:56 HITS.47898763._020042.pool.root.1
[2025-12-17 04:01:32] -rw-r--r--. 1 boincer umatlas       529 Dec 17 03:56 boinc_task_state.xml
[2025-12-17 04:01:32] -rw-------. 1 boincer umatlas      1042 Dec 17 03:57 memory_monitor_summary.json
[2025-12-17 04:01:32] -rw-------. 1 boincer umatlas   1516240 Dec 17 03:58 agis_ddmendpoints.agis.ALL.json
[2025-12-17 04:01:32] -rw-------. 1 boincer umatlas    569616 Dec 17 03:58 log.47898763._020042.job.log.tgz.1
[2025-12-17 04:01:32] -rw-------. 1 boincer umatlas        95 Dec 17 03:58 pilot_heartbeat.json
[2025-12-17 04:01:32] -rw-------. 1 boincer umatlas      7836 Dec 17 03:58 heartbeat.json
[2025-12-17 04:01:32] -rw-------. 1 boincer umatlas      5010 Dec 17 03:59 pilotlog.txt
[2025-12-17 04:01:32] -rw-------. 1 boincer umatlas   2776397 Dec 17 03:59 log.47898763._020042.job.log.1
[2025-12-17 04:01:32] -rw-------. 1 boincer umatlas       357 Dec 17 03:59 output.list
[2025-12-17 04:01:32] -rw-r--r--. 1 boincer umatlas       620 Dec 17 03:59 runtime_log
[2025-12-17 04:01:32] -rw-------. 1 boincer umatlas   3368960 Dec 17 03:59 result.tar.gz
[2025-12-17 04:01:32] -rw-------. 1 boincer umatlas       659 Dec 17 03:59 y6kKDmOklp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm2hVKDmDrJ8sn.diag
[2025-12-17 04:01:32] -rw-r--r--. 1 boincer umatlas      9353 Dec 17 03:59 runtime_log.err
[2025-12-17 04:01:32] -rw-r--r--. 1 boincer umatlas      6879 Dec 17 04:01 init_data.xml
[2025-12-17 04:01:32] -rw-r--r--. 1 boincer umatlas      8192 Dec 17 04:01 boinc_mmap_file
[2025-12-17 04:01:32] -rw-r--r--. 1 boincer umatlas        27 Dec 17 04:01 wrapper_checkpoint.txt
[2025-12-17 04:01:32] -rw-r--r--. 1 boincer umatlas     21415 Dec 17 04:01 stderr.txt
[2025-12-17 04:01:32] HITS file was successfully produced:
[2025-12-17 04:01:32] -rw-------. 1 boincer umatlas 217667185 Dec 17 03:56 shared/HITS.pool.root.1
[2025-12-17 04:01:32]  *** Contents of shared directory: ***
[2025-12-17 04:01:32] total 435060
[2025-12-17 04:01:32] -rw-r--r--. 2 boincer umatlas 223841825 Dec 16 21:31 ATLAS.root_0
[2025-12-17 04:01:32] -rw-r--r--. 2 boincer umatlas     15847 Dec 16 21:31 start_atlas.sh
[2025-12-17 04:01:32] -rw-r--r--. 2 boincer umatlas    592393 Dec 16 21:31 input.tar.gz
[2025-12-17 04:01:32] -rw-------. 1 boincer umatlas 217667185 Dec 17 03:56 HITS.pool.root.1
[2025-12-17 04:01:32] -rw-------. 1 boincer umatlas   3368960 Dec 17 03:59 result.tar.gz
04:01:34 (1106891): run_atlas exited; CPU time 60709.016352
04:01:34 (1106891): called boinc_finish(0)

</stderr_txt>
]]>

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