Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:25:01 (1916114): wrapper (7.7.26015): starting
02:25:01 (1916114): wrapper: running run_atlas (--nthreads 3)
[2025-12-18 02:25:01] Arguments: --nthreads 3
[2025-12-18 02:25:01] Threads: 3
[2025-12-18 02:25:01] Checking for CVMFS
[2025-12-18 02:25:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-18 02:25:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-18 02:25:01] Running cvmfs_config stat atlas.cern.ch
[2025-12-18 02:25:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-18 02:25:01] 2.9.2.0 3452479 6668 83724 154129 3 57 14145966 36864000 0 130560 0 4727789 99.990 237349 8188 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-18 02:25:01] CVMFS is ok
[2025-12-18 02:25:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-18 02:25:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-18 02:25:01] Further information can be found at the LHC@home message board.
[2025-12-18 02:25:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-18 02:25:01] Checking for apptainer binary...
[2025-12-18 02:25:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-18 02:25:01] Running /usr/bin/apptainer --version
[2025-12-18 02:25:01] apptainer version 1.4.1-1.1
[2025-12-18 02:25:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-18 02:25:02] cosA127a
[2025-12-18 02:25:02] apptainer works
[2025-12-18 02:25:02] Set ATHENA_PROC_NUMBER=3
[2025-12-18 02:25:02] Set ATHENA_CORE_NUMBER=3
[2025-12-18 02:25:02] Starting ATLAS job with PandaID=6931730993
[2025-12-18 02:25:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-18 03:53:19]  *** The last 200 lines of the pilot log: ***
[2025-12-18 03:53:19]  protocol_id=None
[2025-12-18 03:53:19]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-18 03:53:19]  replicas=None
[2025-12-18 03:53:19]  scope=mc23_13p6TeV
[2025-12-18 03:53:19]  status=None
[2025-12-18 03:53:19]  status_code=0
[2025-12-18 03:53:19]  storage_token=
[2025-12-18 03:53:19]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6931730993/log.47886831._015142.job.log.tgz.1
[2025-12-18 03:53:19]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c2/0f/log.47886831._015142.job.log.tgz.1
[2025-12-18 03:53:19]  workdir=None
[2025-12-18 03:53:19] ]
[2025-12-18 03:53:19] 2025-12-18 02:52:24,151 | INFO     | transferring file log.47886831._015142.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6931730993/log.47886831._015142.job.log.tgz.1 to /local/data/boinc/
[2025-12-18 03:53:19] 2025-12-18 02:52:24,151 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6931730993/log.47886831._015142.job.log.tgz.1 /local/data/boinc/slots/0/log.47886831._0151
[2025-12-18 03:53:19] 2025-12-18 02:52:24,162 | INFO     | adding to output.list: log.47886831._015142.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c2/0f/log.47886831._015142.job.log.tg
[2025-12-18 03:53:19] 2025-12-18 02:52:24,163 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-18 03:53:19] 2025-12-18 02:52:24,163 | INFO     | summary of transferred files:
[2025-12-18 03:53:19] 2025-12-18 02:52:24,163 | INFO     |  -- lfn=log.47886831._015142.job.log.tgz.1, status_code=0, status=transferred
[2025-12-18 03:53:19] 2025-12-18 02:52:24,163 | INFO     | stage-out finished correctly
[2025-12-18 03:53:19] 2025-12-18 02:52:25,085 | INFO     | time since job start (5238s) is within the limit (174528.0s)
[2025-12-18 03:53:19] 2025-12-18 02:52:26,192 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-18 03:53:19] 2025-12-18 02:52:27,090 | INFO     | time since job start (5240s) is within the limit (174528.0s)
[2025-12-18 03:53:19] 2025-12-18 02:52:28,225 | INFO     | job 6931730993 has state=finished
[2025-12-18 03:53:19] 2025-12-18 02:52:28,225 | INFO     | preparing for final server update for job 6931730993 in state='finished'
[2025-12-18 03:53:19] 2025-12-18 02:52:28,225 | INFO     | this job has now completed (state=finished)
[2025-12-18 03:53:19] 2025-12-18 02:52:28,225 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-18 03:53:19] 2025-12-18 02:52:28,225 | INFO     | log transfer has been attempted: DONE
[2025-12-18 03:53:19] 2025-12-18 02:52:28,225 | INFO     | job 6931730993 has finished - writing final server update
[2025-12-18 03:53:19] 2025-12-18 02:52:28,225 | INFO     | total number of processed events: 400 (read)
[2025-12-18 03:53:19] 2025-12-18 02:52:28,226 | INFO     | executing command: lscpu
[2025-12-18 03:53:19] 2025-12-18 02:52:28,238 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-18 03:53:19] 2025-12-18 02:52:29,028 | WARNING  | process 1926326 can no longer be monitored (due to stat problems) - aborting
[2025-12-18 03:53:19] 2025-12-18 02:52:29,028 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6931730993/memory_monitor_summary.json (trf name=prmon)
[2025-12-18 03:53:19] 2025-12-18 02:52:29,078 | INFO     | number of running child processes to parent process 1926326: 1
[2025-12-18 03:53:19] 2025-12-18 02:52:29,078 | INFO     | maximum number of monitored processes: 6
[2025-12-18 03:53:19] 2025-12-18 02:52:29,096 | INFO     | time since job start (5242s) is within the limit (174528.0s)
[2025-12-18 03:53:19] 2025-12-18 02:52:30,192 | INFO     | PID=1919850 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-18 03:53:19] 2025-12-18 02:52:31,192 | INFO     | time since job start (5244s) is within the limit (174528.0s)
[2025-12-18 03:53:19] 2025-12-18 02:52:31,581 | INFO     | monitor loop #402: job 0:6931730993 is in state 'finished'
[2025-12-18 03:53:19] 2025-12-18 02:52:31,581 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-18 03:53:19] 2025-12-18 02:52:32,553 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-18 03:53:19] 2025-12-18 02:52:32,554 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3905.7757500000002
[2025-12-18 03:53:19] 2025-12-18 02:52:32,555 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6931730993/memory_monitor_summary.json (trf name=prmon)
[2025-12-18 03:53:19] 2025-12-18 02:52:32,555 | INFO     | extracted standard info from prmon json
[2025-12-18 03:53:19] 2025-12-18 02:52:32,555 | INFO     | extracted standard memory fields from prmon json
[2025-12-18 03:53:19] 2025-12-18 02:52:32,555 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-18 03:53:19] 2025-12-18 02:52:32,555 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-18 03:53:19] 2025-12-18 02:52:32,555 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-18 03:53:19] 2025-12-18 02:52:32,556 | INFO     | fitting pss+swap vs Time
[2025-12-18 03:53:19] 2025-12-18 02:52:32,556 | INFO     | sum of square deviations: 152858680.0
[2025-12-18 03:53:19] 2025-12-18 02:52:32,556 | INFO     | sum of deviations: -13523794977.0
[2025-12-18 03:53:19] 2025-12-18 02:52:32,556 | INFO     | mean x: 1766023811.0
[2025-12-18 03:53:19] 2025-12-18 02:52:32,556 | INFO     | mean y: 2509811.3164556962
[2025-12-18 03:53:19] 2025-12-18 02:52:32,556 | INFO     | intersect: 156247113941.51175
[2025-12-18 03:53:19] 2025-12-18 02:52:32,556 | INFO     | chi2: 0.08666058647923322
[2025-12-18 03:53:19] 2025-12-18 02:52:32,556 | INFO     | current memory leak: -88.47 B/s (using 79 data points, chi2=0.09)
[2025-12-18 03:53:19] 2025-12-18 02:52:32,556 | INFO     | could have reported an average CPU frequency of 4044 MHz (6 samples)
[2025-12-18 03:53:19] 2025-12-18 02:52:32,556 | INFO     | ..............................
[2025-12-18 03:53:19] 2025-12-18 02:52:32,556 | INFO     | . Timing measurements:
[2025-12-18 03:53:19] 2025-12-18 02:52:32,556 | INFO     | . get job = 0 s
[2025-12-18 03:53:19] 2025-12-18 02:52:32,556 | INFO     | . initial setup = 1 s
[2025-12-18 03:53:19] 2025-12-18 02:52:32,556 | INFO     | . payload setup = 2 s
[2025-12-18 03:53:19] 2025-12-18 02:52:32,556 | INFO     | . stage-in = 0 s
[2025-12-18 03:53:19] 2025-12-18 02:52:32,556 | INFO     | . payload execution = 5216 s
[2025-12-18 03:53:19] 2025-12-18 02:52:32,556 | INFO     | . stage-out = 0 s
[2025-12-18 03:53:19] 2025-12-18 02:52:32,557 | INFO     | . log creation = 0 s
[2025-12-18 03:53:19] 2025-12-18 02:52:32,557 | INFO     | ..............................
[2025-12-18 03:53:19] 2025-12-18 02:52:32,824 | INFO     | 
[2025-12-18 03:53:19] 2025-12-18 02:52:32,824 | INFO     | job summary report
[2025-12-18 03:53:19] 2025-12-18 02:52:32,824 | INFO     | --------------------------------------------------
[2025-12-18 03:53:19] 2025-12-18 02:52:32,824 | INFO     | PanDA job id: 6931730993
[2025-12-18 03:53:19] 2025-12-18 02:52:32,824 | INFO     | task id: 47886831
[2025-12-18 03:53:19] 2025-12-18 02:52:32,824 | INFO     | errors: (none)
[2025-12-18 03:53:19] 2025-12-18 02:52:32,824 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-18 03:53:19] 2025-12-18 02:52:32,824 | INFO     | pilot state: finished 
[2025-12-18 03:53:19] 2025-12-18 02:52:32,824 | INFO     | transexitcode: 0
[2025-12-18 03:53:19] 2025-12-18 02:52:32,824 | INFO     | exeerrorcode: 0
[2025-12-18 03:53:19] 2025-12-18 02:52:32,824 | INFO     | exeerrordiag: 
[2025-12-18 03:53:19] 2025-12-18 02:52:32,824 | INFO     | exitcode: 0
[2025-12-18 03:53:19] 2025-12-18 02:52:32,824 | INFO     | exitmsg: OK
[2025-12-18 03:53:19] 2025-12-18 02:52:32,824 | INFO     | cpuconsumptiontime: 14949 s
[2025-12-18 03:53:19] 2025-12-18 02:52:32,824 | INFO     | nevents: 400
[2025-12-18 03:53:19] 2025-12-18 02:52:32,824 | INFO     | neventsw: 0
[2025-12-18 03:53:19] 2025-12-18 02:52:32,824 | INFO     | pid: 1926326
[2025-12-18 03:53:19] 2025-12-18 02:52:32,824 | INFO     | pgrp: 1926326
[2025-12-18 03:53:19] 2025-12-18 02:52:32,824 | INFO     | corecount: 3
[2025-12-18 03:53:19] 2025-12-18 02:52:32,824 | INFO     | event service: False
[2025-12-18 03:53:19] 2025-12-18 02:52:32,824 | INFO     | sizes: {0: 2283942, 3: 2284204, 11: 2284232, 5223: 2310872, 5224: 2319876, 5226: 2319932, 5232: 2320254}
[2025-12-18 03:53:19] 2025-12-18 02:52:32,825 | INFO     | --------------------------------------------------
[2025-12-18 03:53:19] 2025-12-18 02:52:32,825 | INFO     | 
[2025-12-18 03:53:19] 2025-12-18 02:52:32,825 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-12-18 03:53:19] 2025-12-18 02:52:32,837 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-18 03:53:19] 2025-12-18 02:52:32,837 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-18 03:53:19] 2025-12-18 02:52:32,837 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-18 03:53:19] 2025-12-18 02:52:32,837 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-18 03:53:19] 2025-12-18 02:52:32,837 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-18 03:53:19] 2025-12-18 02:52:32,837 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-18 03:53:19] 2025-12-18 02:52:32,837 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-18 03:53:19] 2025-12-18 02:52:32,837 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-18 03:53:19] 2025-12-18 02:52:32,837 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-18 03:53:19] 2025-12-18 02:52:32,837 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-18 03:53:19] 2025-12-18 02:52:32,837 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-18 03:53:19] 2025-12-18 02:52:32,837 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-18 03:53:19] 2025-12-18 02:52:32,837 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-18 03:53:19] 2025-12-18 02:52:32,837 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-18 03:53:19] 2025-12-18 02:52:32,837 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-18 03:53:19] 2025-12-18 02:52:32,837 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-18 03:53:19] 2025-12-18 02:52:32,837 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-18 03:53:19] 2025-12-18 02:52:32,838 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-18 03:53:19] 2025-12-18 02:52:32,838 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-18 03:53:19] 2025-12-18 02:52:32,838 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-18 03:53:19] 2025-12-18 02:52:32,838 | INFO     | job 6931730993 has completed (purged errors)
[2025-12-18 03:53:19] 2025-12-18 02:52:32,838 | INFO     | overall cleanup function is called
[2025-12-18 03:53:19] 2025-12-18 02:52:33,844 | INFO     | --- collectZombieJob: --- 10, [1926326]
[2025-12-18 03:53:19] 2025-12-18 02:52:33,844 | INFO     | zombie collector waiting for pid 1926326
[2025-12-18 03:53:19] 2025-12-18 02:52:33,844 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-18 03:53:19] 2025-12-18 02:52:33,844 | INFO     | collected zombie processes
[2025-12-18 03:53:19] 2025-12-18 02:52:33,844 | INFO     | will attempt to kill all subprocesses of pid=1926326
[2025-12-18 03:53:19] 2025-12-18 02:52:33,895 | INFO     | process IDs to be killed: [1926326] (in reverse order)
[2025-12-18 03:53:19] 2025-12-18 02:52:33,922 | WARNING  | found no corresponding commands to process id(s)
[2025-12-18 03:53:19] 2025-12-18 02:52:33,922 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-18 03:53:19] 2025-12-18 02:52:33,924 | INFO     | did not find any defunct processes belonging to 1926326
[2025-12-18 03:53:19] 2025-12-18 02:52:33,925 | INFO     | did not find any defunct processes belonging to 1926326
[2025-12-18 03:53:19] 2025-12-18 02:52:33,925 | INFO     | ready for new job
[2025-12-18 03:53:19] 2025-12-18 02:52:33,925 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-18 03:53:19] 2025-12-18 02:52:33,926 | INFO     | ***************************************
[2025-12-18 03:53:19] 2025-12-18 02:52:33,926 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-18 03:53:19] 2025-12-18 02:52:33,926 | INFO     | ***************************************
[2025-12-18 03:53:19] 2025-12-18 02:52:33,926 | INFO     | 
[2025-12-18 03:53:19] 2025-12-18 02:52:33,927 | INFO     | architecture information:
[2025-12-18 03:53:19] 2025-12-18 02:52:33,927 | INFO     | executing command: cat /etc/os-release
[2025-12-18 03:53:19] 2025-12-18 02:52:33,935 | INFO     | cat /etc/os-release:
[2025-12-18 03:53:19] NAME="CentOS Linux"
[2025-12-18 03:53:19] VERSION="7 (Core)"
[2025-12-18 03:53:19] ID="centos"
[2025-12-18 03:53:19] ID_LIKE="rhel fedora"
[2025-12-18 03:53:19] VERSION_ID="7"
[2025-12-18 03:53:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-18 03:53:19] ANSI_COLOR="0;31"
[2025-12-18 03:53:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-18 03:53:19] HOME_URL="https://www.centos.org/"
[2025-12-18 03:53:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-18 03:53:19] 
[2025-12-18 03:53:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-18 03:53:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-18 03:53:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-18 03:53:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-18 03:53:19] 
[2025-12-18 03:53:19] 2025-12-18 02:52:33,935 | INFO     | ***************************************
[2025-12-18 03:53:19] 2025-12-18 02:52:34,438 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-18 03:53:19] 2025-12-18 02:52:34,447 | INFO     | sufficient remaining disk space (344911249408 B)
[2025-12-18 03:53:19] 2025-12-18 02:52:34,447 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-18 03:53:19] 2025-12-18 02:52:34,447 | INFO     | current server update state: UPDATING_FINAL
[2025-12-18 03:53:19] 2025-12-18 02:52:34,447 | INFO     | update_server=False
[2025-12-18 03:53:19] 2025-12-18 02:52:34,447 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-18 03:53:19] 2025-12-18 02:52:34,447 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-18 03:53:19] 2025-12-18 02:52:34,706 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-18 03:53:19] 2025-12-18 02:52:34,977 | INFO     | all payload control threads have been joined
[2025-12-18 03:53:19] 2025-12-18 02:52:35,094 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-18 03:53:19] 2025-12-18 02:52:35,094 | INFO     | aborting loop
[2025-12-18 03:53:19] 2025-12-18 02:52:35,205 | INFO     | all data control threads have been joined
[2025-12-18 03:53:19] 2025-12-18 02:52:35,453 | INFO     | [job] retrieve thread has finished
[2025-12-18 03:53:19] 2025-12-18 02:52:35,453 | INFO     | [job] queue monitor thread has finished
[2025-12-18 03:53:19] 2025-12-18 02:52:35,555 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-18 03:53:19] 2025-12-18 02:52:35,727 | INFO     | [payload] validate_post thread has finished
[2025-12-18 03:53:19] 2025-12-18 02:52:35,982 | INFO     | [payload] control thread has finished
[2025-12-18 03:53:19] 2025-12-18 02:52:36,099 | INFO     | [job] job monitor thread has finished
[2025-12-18 03:53:19] 2025-12-18 02:52:36,123 | INFO     | all job control threads have been joined
[2025-12-18 03:53:19] 2025-12-18 02:52:36,210 | INFO     | [data] control thread has finished
[2025-12-18 03:53:19] 2025-12-18 02:52:36,253 | INFO     | [payload] failed_post thread has finished
[2025-12-18 03:53:19] 2025-12-18 02:52:36,335 | INFO     | [data] copytool_in thread has finished
[2025-12-18 03:53:19] 2025-12-18 02:52:36,495 | INFO     | [payload] execute_payloads thread has finished
[2025-12-18 03:53:19] 2025-12-18 02:52:36,711 | INFO     | [data] copytool_out thread has finished
[2025-12-18 03:53:19] 2025-12-18 02:52:36,728 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-18 03:53:19] 2025-12-18 02:52:36,860 | INFO     | [job] create_data_payload thread has finished
[2025-12-18 03:53:19] 2025-12-18 02:52:36,872 | INFO     | [job] validate thread has finished
[2025-12-18 03:53:19] 2025-12-18 02:52:36,895 | INFO     | [payload] validate_pre thread has finished
[2025-12-18 03:53:19] 2025-12-18 02:52:37,128 | INFO     | [job] control thread has finished
[2025-12-18 03:53:19] 2025-12-18 02:52:40,733 | INFO     | [data] queue_monitor thread has finished
[2025-12-18 03:53:19] 2025-12-18 02:53:04,331 | INFO     | PID=1919850 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-18 03:53:19] 2025-12-18 02:53:04,332 | INFO     | found 0 job(s) in 20 queues
[2025-12-18 03:53:19] 2025-12-18 02:53:04,332 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-18 03:53:19] 2025-12-18 02:53:04,332 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-18 03:53:19] 2025-12-18 02:53:13,657 | INFO     | [monitor] cgroup control has ended
[2025-12-18 03:53:19] 2025-12-18 02:53:14,307 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139836943685440)>', '<ExcThread(monitor, started 139836459566848)>']
[2025-12-18 03:53:19] 2025-12-18 02:53:14,382 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-18 03:53:19] 2025-12-18 02:53:14,382 | INFO     | [monitor] control thread has ended
[2025-12-18 03:53:19] 2025-12-18 02:53:19,328 | INFO     | all workflow threads have been joined
[2025-12-18 03:53:19] 2025-12-18 02:53:19,328 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-18 03:53:19] 2025-12-18 02:53:19,328 | INFO     | traces error code: 0
[2025-12-18 03:53:19] 2025-12-18 02:53:19,328 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-18 03:53:19] 2025-12-18 02:53:19,375 [wrapper] ==== pilot stdout END ====
[2025-12-18 03:53:19] 2025-12-18 02:53:19,378 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-18 03:53:19] 2025-12-18 02:53:19,380 [wrapper] pilotpid: 1919850
[2025-12-18 03:53:19] 2025-12-18 02:53:19,382 [wrapper] Pilot exit status: 0
[2025-12-18 03:53:19] 2025-12-18 02:53:19,389 [wrapper] pandaids: 6931730993
[2025-12-18 03:53:19] 2025-12-18 02:53:19,408 [wrapper] cleanup supervisor_pilot 1947879 1919851
[2025-12-18 03:53:19] 2025-12-18 02:53:19,410 [wrapper] Test setup, not cleaning
[2025-12-18 03:53:19] 2025-12-18 02:53:19,412 [wrapper] apfmon messages muted
[2025-12-18 03:53:19] 2025-12-18 02:53:19,415 [wrapper] ==== wrapper stdout END ====
[2025-12-18 03:53:19] 2025-12-18 02:53:19,417 [wrapper] ==== wrapper stderr END ====
[2025-12-18 03:53:19]  *** Error codes and diagnostics ***
[2025-12-18 03:53:19]     "exeErrorCode": 0,
[2025-12-18 03:53:19]     "exeErrorDiag": "",
[2025-12-18 03:53:19]     "pilotErrorCode": 0,
[2025-12-18 03:53:19]     "pilotErrorDiag": "",
[2025-12-18 03:53:19]  *** Listing of results directory ***
[2025-12-18 03:53:19] total 339160
[2025-12-18 03:53:19] -rw-r--r-- 1 boinc boinc    579449 Dec 16 21:04 pilot3.tar.gz
[2025-12-18 03:53:19] -rwx------ 1 boinc boinc     36322 Dec 16 21:08 runpilot2-wrapper.sh
[2025-12-18 03:53:19] -rw-r--r-- 1 boinc boinc      5112 Dec 16 21:10 queuedata.json
[2025-12-18 03:53:19] -rw-r--r-- 1 boinc boinc       100 Dec 18 02:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-18 03:53:19] -rwxr-xr-x 1 boinc boinc      7986 Dec 18 02:25 run_atlas
[2025-12-18 03:53:19] -rw-r--r-- 1 boinc boinc       105 Dec 18 02:25 job.xml
[2025-12-18 03:53:19] -rw-r--r-- 2 boinc boinc 192463683 Dec 18 02:25 EVNT.47886829._000296.pool.root.1
[2025-12-18 03:53:19] -rw-r--r-- 2 boinc boinc    592427 Dec 18 02:25 input.tar.gz
[2025-12-18 03:53:19] -rw-r--r-- 2 boinc boinc     15847 Dec 18 02:25 start_atlas.sh
[2025-12-18 03:53:19] drwxrwx--x 2 boinc boinc      4096 Dec 18 02:25 shared
[2025-12-18 03:53:19] -rw-r--r-- 1 boinc boinc         0 Dec 18 02:25 boinc_setup_complete
[2025-12-18 03:53:19] -rw-r--r-- 1 boinc boinc      6441 Dec 18 02:25 init_data.xml
[2025-12-18 03:53:19] -rw-r--r-- 1 boinc boinc         0 Dec 18 02:25 boinc_lockfile
[2025-12-18 03:53:19] -rw-r--r-- 1 boinc boinc      2537 Dec 18 02:25 pandaJob.out
[2025-12-18 03:53:19] -rw------- 1 boinc boinc    988102 Dec 18 02:25 agis_schedconf.cvmfs.json
[2025-12-18 03:53:19] -rw------- 1 boinc boinc   1516240 Dec 18 02:25 agis_ddmendpoints.agis.ALL.json
[2025-12-18 03:53:19] drwx------ 5 boinc boinc      4096 Dec 18 02:25 pilot3
[2025-12-18 03:53:19] -rw------- 1 boinc boinc 148886866 Dec 18 03:52 HITS.47886831._015142.pool.root.1
[2025-12-18 03:53:19] -rw-r--r-- 1 boinc boinc       529 Dec 18 03:52 boinc_task_state.xml
[2025-12-18 03:53:19] -rw------- 1 boinc boinc      1018 Dec 18 03:52 memory_monitor_summary.json
[2025-12-18 03:53:19] -rw------- 1 boinc boinc    249840 Dec 18 03:52 log.47886831._015142.job.log.tgz.1
[2025-12-18 03:53:19] -rw------- 1 boinc boinc      7762 Dec 18 03:52 heartbeat.json
[2025-12-18 03:53:19] -rw------- 1 boinc boinc        95 Dec 18 03:53 pilot_heartbeat.json
[2025-12-18 03:53:19] -rw-r--r-- 1 boinc boinc        27 Dec 18 03:53 wrapper_checkpoint.txt
[2025-12-18 03:53:19] -rw-r--r-- 1 boinc boinc      8192 Dec 18 03:53 boinc_mmap_file
[2025-12-18 03:53:19] -rw------- 1 boinc boinc      4752 Dec 18 03:53 pilotlog.txt
[2025-12-18 03:53:19] -rw------- 1 boinc boinc    766169 Dec 18 03:53 log.47886831._015142.job.log.1
[2025-12-18 03:53:19] -rw------- 1 boinc boinc       357 Dec 18 03:53 output.list
[2025-12-18 03:53:19] -rw-r--r-- 1 boinc boinc       620 Dec 18 03:53 runtime_log
[2025-12-18 03:53:19] -rw------- 1 boinc boinc   1034240 Dec 18 03:53 result.tar.gz
[2025-12-18 03:53:19] -rw-r--r-- 1 boinc boinc      8907 Dec 18 03:53 runtime_log.err
[2025-12-18 03:53:19] -rw------- 1 boinc boinc       660 Dec 18 03:53 qz6MDmuWqp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdkaKDmKfK1cm.diag
[2025-12-18 03:53:19] -rw-r--r-- 1 boinc boinc     21975 Dec 18 03:53 stderr.txt
[2025-12-18 03:53:19] HITS file was successfully produced:
[2025-12-18 03:53:19] -rw------- 1 boinc boinc 148886866 Dec 18 03:52 shared/HITS.pool.root.1
[2025-12-18 03:53:19]  *** Contents of shared directory: ***
[2025-12-18 03:53:19] total 334972
[2025-12-18 03:53:19] -rw-r--r-- 2 boinc boinc 192463683 Dec 18 02:25 ATLAS.root_0
[2025-12-18 03:53:19] -rw-r--r-- 2 boinc boinc    592427 Dec 18 02:25 input.tar.gz
[2025-12-18 03:53:19] -rw-r--r-- 2 boinc boinc     15847 Dec 18 02:25 start_atlas.sh
[2025-12-18 03:53:19] -rw------- 1 boinc boinc 148886866 Dec 18 03:52 HITS.pool.root.1
[2025-12-18 03:53:19] -rw------- 1 boinc boinc   1034240 Dec 18 03:53 result.tar.gz
03:53:21 (1916114): run_atlas exited; CPU time 14976.186115
03:53:21 (1916114): called boinc_finish(0)

</stderr_txt>
]]>

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