Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:30:24 (12262): wrapper (7.7.26015): starting
20:30:24 (12262): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 20:30:24] Arguments: --nthreads 8
[2025-12-16 20:30:24] Threads: 8
[2025-12-16 20:30:24] Checking for CVMFS
[2025-12-16 20:30:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 20:30:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 20:30:24] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 20:30:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 20:30:24] 2.11.2.0 3733 147282 147604 154094 2 236 13480217 18432001 1832 130560 0 109611323 99.978 5995017 32307 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-16 20:30:24] CVMFS is ok
[2025-12-16 20:30:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 20:30:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 20:30:24] Further information can be found at the LHC@home message board.
[2025-12-16 20:30:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 20:30:24] Checking for apptainer binary...
[2025-12-16 20:30:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 20:30:24] Running /usr/bin/apptainer --version
[2025-12-16 20:30:24] apptainer version 1.3.2-1.el7
[2025-12-16 20:30:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 20:30:25] c-206-23.aglt2.org
[2025-12-16 20:30:25] apptainer works
[2025-12-16 20:30:25] Set ATHENA_PROC_NUMBER=8
[2025-12-16 20:30:25] Set ATHENA_CORE_NUMBER=8
[2025-12-16 20:30:25] Starting ATLAS job with PandaID=6933463582
[2025-12-16 20:30:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 23:28:59]  *** The last 200 lines of the pilot log: ***
[2025-12-16 23:28:59] 2025-12-17 04:27:57,677 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 23:28:59] 2025-12-17 04:27:57,897 | INFO     | time since job start (10641s) is within the limit (174528.0s)
[2025-12-16 23:28:59] 2025-12-17 04:27:58,765 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-16 23:28:59] 2025-12-17 04:27:58,772 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2439.0833333333335
[2025-12-16 23:28:59] 2025-12-17 04:27:58,777 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6933463582/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 23:28:59] 2025-12-17 04:27:58,778 | INFO     | extracted standard info from prmon json
[2025-12-16 23:28:59] 2025-12-17 04:27:58,778 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 23:28:59] 2025-12-17 04:27:58,778 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 23:28:59] 2025-12-17 04:27:58,779 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 23:28:59] 2025-12-17 04:27:58,779 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 23:28:59] 2025-12-17 04:27:58,784 | INFO     | fitting pss+swap vs Time
[2025-12-16 23:28:59] 2025-12-17 04:27:58,785 | INFO     | sum of square deviations: 1633472487.5
[2025-12-16 23:28:59] 2025-12-17 04:27:58,786 | INFO     | sum of deviations: 15254303397.5
[2025-12-16 23:28:59] 2025-12-17 04:27:58,786 | INFO     | mean x: 1765940337.5
[2025-12-16 23:28:59] 2025-12-17 04:27:58,786 | INFO     | mean y: 2494202.7183908047
[2025-12-16 23:28:59] 2025-12-17 04:27:58,787 | INFO     | intersect: -16488869989.97576
[2025-12-16 23:28:59] 2025-12-17 04:27:58,787 | INFO     | chi2: 1.5542485855109072
[2025-12-16 23:28:59] 2025-12-17 04:27:58,788 | INFO     | sum of square deviations: 1496660620.0
[2025-12-16 23:28:59] 2025-12-17 04:27:58,789 | INFO     | sum of deviations: 14994728298.00001
[2025-12-16 23:28:59] 2025-12-17 04:27:58,789 | INFO     | mean x: 1765940185.0
[2025-12-16 23:28:59] 2025-12-17 04:27:58,789 | INFO     | mean y: 2493913.201183432
[2025-12-16 23:28:59] 2025-12-17 04:27:58,789 | INFO     | intersect: -17690089769.928577
[2025-12-16 23:28:59] 2025-12-17 04:27:58,790 | INFO     | chi2: 1.5556249603395131
[2025-12-16 23:28:59] 2025-12-17 04:27:58,790 | INFO     | current chi2=1.5556249603395131 (change=-0.08855564299281882 %)
[2025-12-16 23:28:59] 2025-12-17 04:27:58,790 | INFO     | right removable region: 168
[2025-12-16 23:28:59] 2025-12-17 04:27:58,791 | INFO     | sum of square deviations: 1496660620.0
[2025-12-16 23:28:59] 2025-12-17 04:27:58,792 | INFO     | sum of deviations: -12686782622.999998
[2025-12-16 23:28:59] 2025-12-17 04:27:58,792 | INFO     | mean x: 1765940490.0
[2025-12-16 23:28:59] 2025-12-17 04:27:58,792 | INFO     | mean y: 2524988.3372781067
[2025-12-16 23:28:59] 2025-12-17 04:27:58,793 | INFO     | intersect: 14971919400.401184
[2025-12-16 23:28:59] 2025-12-17 04:27:58,793 | INFO     | chi2: 0.0662816777766802
[2025-12-16 23:28:59] 2025-12-17 04:27:58,793 | INFO     | current chi2=0.0662816777766802 (change=95.7354519479976 %)
[2025-12-16 23:28:59] 2025-12-17 04:27:58,794 | INFO     | sum of square deviations: 1367709365.0
[2025-12-16 23:28:59] 2025-12-17 04:27:58,795 | INFO     | sum of deviations: -15084635892.999998
[2025-12-16 23:28:59] 2025-12-17 04:27:58,795 | INFO     | mean x: 1765940642.5
[2025-12-16 23:28:59] 2025-12-17 04:27:58,795 | INFO     | mean y: 2527759.2682926827
[2025-12-16 23:28:59] 2025-12-17 04:27:58,796 | INFO     | intersect: 19479305708.188
[2025-12-16 23:28:59] 2025-12-17 04:27:58,796 | INFO     | chi2: 0.035108233572161314
[2025-12-16 23:28:59] 2025-12-17 04:27:58,796 | INFO     | current chi2=0.035108233572161314 (change=47.0317669229046 %)
[2025-12-16 23:28:59] 2025-12-17 04:27:58,797 | INFO     | sum of square deviations: 1246386160.0
[2025-12-16 23:28:59] 2025-12-17 04:27:58,798 | INFO     | sum of deviations: -13557860671.000002
[2025-12-16 23:28:59] 2025-12-17 04:27:58,798 | INFO     | mean x: 1765940795.0
[2025-12-16 23:28:59] 2025-12-17 04:27:58,798 | INFO     | mean y: 2525835.452830189
[2025-12-16 23:28:59] 2025-12-17 04:27:58,798 | INFO     | intersect: 19211965108.948116
[2025-12-16 23:28:59] 2025-12-17 04:27:58,799 | INFO     | chi2: 0.035006523919804064
[2025-12-16 23:28:59] 2025-12-17 04:27:58,799 | INFO     | current chi2=0.035006523919804064 (change=0.28970313230996486 %)
[2025-12-16 23:28:59] 2025-12-17 04:27:58,799 | INFO     | left removable region: 30
[2025-12-16 23:28:59] 2025-12-17 04:27:58,799 | INFO     | sum of square deviations: 814878534.5
[2025-12-16 23:28:59] 2025-12-17 04:27:58,801 | INFO     | sum of deviations: -6558760198.999997
[2025-12-16 23:28:59] 2025-12-17 04:27:58,801 | INFO     | mean x: 1765941069.5
[2025-12-16 23:28:59] 2025-12-17 04:27:58,801 | INFO     | mean y: 2516771.0144927534
[2025-12-16 23:28:59] 2025-12-17 04:27:58,801 | INFO     | intersect: 14216149245.114334
[2025-12-16 23:28:59] 2025-12-17 04:27:58,801 | INFO     | chi2: 0.027963416663870068
[2025-12-16 23:28:59] 2025-12-17 04:27:58,802 | INFO     | current memory leak: -8.05 B/s (using 138 data points, chi2=0.03)
[2025-12-16 23:28:59] 2025-12-17 04:27:58,802 | INFO     | could have reported an average CPU frequency of 2557 MHz (9 samples)
[2025-12-16 23:28:59] 2025-12-17 04:27:58,803 | INFO     | ..............................
[2025-12-16 23:28:59] 2025-12-17 04:27:58,803 | INFO     | . Timing measurements:
[2025-12-16 23:28:59] 2025-12-17 04:27:58,803 | INFO     | . get job = 0 s
[2025-12-16 23:28:59] 2025-12-17 04:27:58,803 | INFO     | . initial setup = 2 s
[2025-12-16 23:28:59] 2025-12-17 04:27:58,803 | INFO     | . payload setup = 4 s
[2025-12-16 23:28:59] 2025-12-17 04:27:58,803 | INFO     | . stage-in = 0 s
[2025-12-16 23:28:59] 2025-12-17 04:27:58,804 | INFO     | . payload execution = 10610 s
[2025-12-16 23:28:59] 2025-12-17 04:27:58,804 | INFO     | . stage-out = 0 s
[2025-12-16 23:28:59] 2025-12-17 04:27:58,804 | INFO     | . log creation = 0 s
[2025-12-16 23:28:59] 2025-12-17 04:27:58,804 | INFO     | ..............................
[2025-12-16 23:28:59] 2025-12-17 04:27:59,216 | INFO     | 
[2025-12-16 23:28:59] 2025-12-17 04:27:59,217 | INFO     | job summary report
[2025-12-16 23:28:59] 2025-12-17 04:27:59,217 | INFO     | --------------------------------------------------
[2025-12-16 23:28:59] 2025-12-17 04:27:59,217 | INFO     | PanDA job id: 6933463582
[2025-12-16 23:28:59] 2025-12-17 04:27:59,217 | INFO     | task id: 47899042
[2025-12-16 23:28:59] 2025-12-17 04:27:59,217 | INFO     | errors: (none)
[2025-12-16 23:28:59] 2025-12-17 04:27:59,218 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 23:28:59] 2025-12-17 04:27:59,218 | INFO     | pilot state: finished 
[2025-12-16 23:28:59] 2025-12-17 04:27:59,218 | INFO     | transexitcode: 0
[2025-12-16 23:28:59] 2025-12-17 04:27:59,218 | INFO     | exeerrorcode: 0
[2025-12-16 23:28:59] 2025-12-17 04:27:59,218 | INFO     | exeerrordiag: 
[2025-12-16 23:28:59] 2025-12-17 04:27:59,218 | INFO     | exitcode: 0
[2025-12-16 23:28:59] 2025-12-17 04:27:59,219 | INFO     | exitmsg: OK
[2025-12-16 23:28:59] 2025-12-17 04:27:59,219 | INFO     | cpuconsumptiontime: 80159 s
[2025-12-16 23:28:59] 2025-12-17 04:27:59,219 | INFO     | nevents: 400
[2025-12-16 23:28:59] 2025-12-17 04:27:59,219 | INFO     | neventsw: 0
[2025-12-16 23:28:59] 2025-12-17 04:27:59,219 | INFO     | pid: 22433
[2025-12-16 23:28:59] 2025-12-17 04:27:59,219 | INFO     | pgrp: 22433
[2025-12-16 23:28:59] 2025-12-17 04:27:59,220 | INFO     | corecount: 8
[2025-12-16 23:28:59] 2025-12-17 04:27:59,220 | INFO     | event service: False
[2025-12-16 23:28:59] 2025-12-17 04:27:59,220 | INFO     | sizes: {0: 2283111, 1: 2283967, 5: 2284229, 12: 2284285, 10619: 2313153, 10622: 2322335, 10628: 2322537}
[2025-12-16 23:28:59] 2025-12-17 04:27:59,220 | INFO     | --------------------------------------------------
[2025-12-16 23:28:59] 2025-12-17 04:27:59,220 | INFO     | 
[2025-12-16 23:28:59] 2025-12-17 04:27:59,220 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-16 23:28:59] 2025-12-17 04:27:59,254 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 23:28:59] 2025-12-17 04:27:59,255 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 23:28:59] 2025-12-17 04:27:59,255 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 23:28:59] 2025-12-17 04:27:59,255 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 23:28:59] 2025-12-17 04:27:59,255 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 23:28:59] 2025-12-17 04:27:59,256 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 23:28:59] 2025-12-17 04:27:59,256 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 23:28:59] 2025-12-17 04:27:59,256 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 23:28:59] 2025-12-17 04:27:59,256 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 23:28:59] 2025-12-17 04:27:59,256 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 23:28:59] 2025-12-17 04:27:59,256 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 23:28:59] 2025-12-17 04:27:59,257 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 23:28:59] 2025-12-17 04:27:59,257 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 23:28:59] 2025-12-17 04:27:59,257 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 23:28:59] 2025-12-17 04:27:59,257 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 23:28:59] 2025-12-17 04:27:59,257 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 23:28:59] 2025-12-17 04:27:59,258 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 23:28:59] 2025-12-17 04:27:59,258 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 23:28:59] 2025-12-17 04:27:59,258 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 23:28:59] 2025-12-17 04:27:59,258 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 23:28:59] 2025-12-17 04:27:59,258 | INFO     | job 6933463582 has completed (purged errors)
[2025-12-16 23:28:59] 2025-12-17 04:27:59,259 | INFO     | overall cleanup function is called
[2025-12-16 23:28:59] 2025-12-17 04:28:00,264 | INFO     | --- collectZombieJob: --- 10, [22433]
[2025-12-16 23:28:59] 2025-12-17 04:28:00,265 | INFO     | zombie collector waiting for pid 22433
[2025-12-16 23:28:59] 2025-12-17 04:28:00,265 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 23:28:59] 2025-12-17 04:28:00,265 | INFO     | collected zombie processes
[2025-12-16 23:28:59] 2025-12-17 04:28:00,265 | INFO     | will attempt to kill all subprocesses of pid=22433
[2025-12-16 23:28:59] 2025-12-17 04:28:00,431 | INFO     | process IDs to be killed: [22433] (in reverse order)
[2025-12-16 23:28:59] 2025-12-17 04:28:00,644 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 23:28:59] 2025-12-17 04:28:00,644 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 23:28:59] 2025-12-17 04:28:00,647 | INFO     | did not find any defunct processes belonging to 22433
[2025-12-16 23:28:59] 2025-12-17 04:28:00,649 | INFO     | did not find any defunct processes belonging to 22433
[2025-12-16 23:28:59] 2025-12-17 04:28:00,649 | INFO     | ready for new job
[2025-12-16 23:28:59] 2025-12-17 04:28:00,649 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 23:28:59] 2025-12-17 04:28:00,651 | INFO     | ***************************************
[2025-12-16 23:28:59] 2025-12-17 04:28:00,651 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 23:28:59] 2025-12-17 04:28:00,651 | INFO     | ***************************************
[2025-12-16 23:28:59] 2025-12-17 04:28:00,651 | INFO     | 
[2025-12-16 23:28:59] 2025-12-17 04:28:00,652 | INFO     | architecture information:
[2025-12-16 23:28:59] 2025-12-17 04:28:00,652 | INFO     | executing command: cat /etc/os-release
[2025-12-16 23:28:59] 2025-12-17 04:28:00,663 | INFO     | cat /etc/os-release:
[2025-12-16 23:28:59] NAME="CentOS Linux"
[2025-12-16 23:28:59] VERSION="7 (Core)"
[2025-12-16 23:28:59] ID="centos"
[2025-12-16 23:28:59] ID_LIKE="rhel fedora"
[2025-12-16 23:28:59] VERSION_ID="7"
[2025-12-16 23:28:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 23:28:59] ANSI_COLOR="0;31"
[2025-12-16 23:28:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 23:28:59] HOME_URL="https://www.centos.org/"
[2025-12-16 23:28:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 23:28:59] 
[2025-12-16 23:28:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 23:28:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 23:28:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 23:28:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 23:28:59] 
[2025-12-16 23:28:59] 2025-12-17 04:28:00,663 | INFO     | ***************************************
[2025-12-16 23:28:59] 2025-12-17 04:28:01,166 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-16 23:28:59] 2025-12-17 04:28:01,180 | INFO     | sufficient remaining disk space (27893170176 B)
[2025-12-16 23:28:59] 2025-12-17 04:28:01,181 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 23:28:59] 2025-12-17 04:28:01,181 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 23:28:59] 2025-12-17 04:28:01,181 | INFO     | update_server=False
[2025-12-16 23:28:59] 2025-12-17 04:28:01,181 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 23:28:59] 2025-12-17 04:28:01,182 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 23:28:59] 2025-12-17 04:28:01,184 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 23:28:59] 2025-12-17 04:28:01,185 | INFO     | aborting loop
[2025-12-16 23:28:59] 2025-12-17 04:28:01,547 | INFO     | all payload control threads have been joined
[2025-12-16 23:28:59] 2025-12-17 04:28:01,655 | INFO     | all data control threads have been joined
[2025-12-16 23:28:59] 2025-12-17 04:28:01,971 | INFO     | all job control threads have been joined
[2025-12-16 23:28:59] 2025-12-17 04:28:02,187 | INFO     | [job] retrieve thread has finished
[2025-12-16 23:28:59] 2025-12-17 04:28:02,189 | INFO     | [job] job monitor thread has finished
[2025-12-16 23:28:59] 2025-12-17 04:28:02,277 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 23:28:59] 2025-12-17 04:28:02,508 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 23:28:59] 2025-12-17 04:28:02,553 | INFO     | [payload] control thread has finished
[2025-12-16 23:28:59] 2025-12-17 04:28:02,613 | INFO     | [payload] validate_post thread has finished
[2025-12-16 23:28:59] 2025-12-17 04:28:02,661 | INFO     | [data] control thread has finished
[2025-12-16 23:28:59] 2025-12-17 04:28:02,798 | INFO     | [data] copytool_in thread has finished
[2025-12-16 23:28:59] 2025-12-17 04:28:02,977 | INFO     | [job] control thread has finished
[2025-12-16 23:28:59] 2025-12-17 04:28:02,998 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 23:28:59] 2025-12-17 04:28:03,030 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 23:28:59] 2025-12-17 04:28:03,056 | INFO     | [job] validate thread has finished
[2025-12-16 23:28:59] 2025-12-17 04:28:03,080 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 23:28:59] 2025-12-17 04:28:03,187 | INFO     | [data] copytool_out thread has finished
[2025-12-16 23:28:59] 2025-12-17 04:28:03,602 | INFO     | [payload] failed_post thread has finished
[2025-12-16 23:28:59] 2025-12-17 04:28:03,952 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 23:28:59] 2025-12-17 04:28:04,957 | INFO     | [job] queue monitor thread has finished
[2025-12-16 23:28:59] 2025-12-17 04:28:07,088 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 23:28:59] 2025-12-17 04:28:31,136 | INFO     | PID=15959 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 23:28:59] 2025-12-17 04:28:31,137 | INFO     | .. there are 3 such processes running
[2025-12-16 23:28:59] 2025-12-17 04:28:31,148 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 23:28:59] 2025-12-17 04:28:31,148 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 23:28:59] 2025-12-17 04:28:31,148 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 23:28:59] 2025-12-17 04:28:53,003 | INFO     | [monitor] cgroup control has ended
[2025-12-16 23:28:59] 2025-12-17 04:28:54,009 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140140244313920)>', '<ExcThread(monitor, started 140139800024832)>']
[2025-12-16 23:28:59] 2025-12-17 04:28:54,256 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 23:28:59] 2025-12-17 04:28:54,257 | INFO     | [monitor] control thread has ended
[2025-12-16 23:28:59] 2025-12-17 04:28:59,034 | INFO     | all workflow threads have been joined
[2025-12-16 23:28:59] 2025-12-17 04:28:59,035 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 23:28:59] 2025-12-17 04:28:59,035 | INFO     | traces error code: 0
[2025-12-16 23:28:59] 2025-12-17 04:28:59,035 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 23:28:59] 2025-12-17 04:28:59,170 [wrapper] ==== pilot stdout END ====
[2025-12-16 23:28:59] 2025-12-17 04:28:59,172 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 23:28:59] 2025-12-17 04:28:59,175 [wrapper] pilotpid: 15959
[2025-12-16 23:28:59] 2025-12-17 04:28:59,177 [wrapper] Pilot exit status: 0
[2025-12-16 23:28:59] 2025-12-17 04:28:59,186 [wrapper] pandaids: 6933463582
[2025-12-16 23:28:59] 2025-12-17 04:28:59,219 [wrapper] cleanup supervisor_pilot  1137 15960
[2025-12-16 23:28:59] 2025-12-17 04:28:59,221 [wrapper] Test setup, not cleaning
[2025-12-16 23:28:59] 2025-12-17 04:28:59,224 [wrapper] apfmon messages muted
[2025-12-16 23:28:59] 2025-12-17 04:28:59,228 [wrapper] ==== wrapper stdout END ====
[2025-12-16 23:28:59] 2025-12-17 04:28:59,234 [wrapper] ==== wrapper stderr END ====
[2025-12-16 23:28:59]  *** Error codes and diagnostics ***
[2025-12-16 23:28:59]     "exeErrorCode": 0,
[2025-12-16 23:28:59]     "exeErrorDiag": "",
[2025-12-16 23:28:59]     "pilotErrorCode": 0,
[2025-12-16 23:28:59]     "pilotErrorDiag": "",
[2025-12-16 23:28:59]  *** Listing of results directory ***
[2025-12-16 23:28:59] total 375856
[2025-12-16 23:28:59] -rw-r--r-- 1 boincer umatlas    579449 Dec 16 15:04 pilot3.tar.gz
[2025-12-16 23:28:59] -rwx------ 1 boincer umatlas     36322 Dec 16 15:08 runpilot2-wrapper.sh
[2025-12-16 23:28:59] -rw-r--r-- 1 boincer umatlas      5112 Dec 16 15:08 queuedata.json
[2025-12-16 23:28:59] -rw-r--r-- 1 boincer umatlas       100 Dec 16 20:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 23:28:59] -rwxr-xr-x 1 boincer umatlas      7986 Dec 16 20:30 run_atlas
[2025-12-16 23:28:59] -rw-r--r-- 1 boincer umatlas       105 Dec 16 20:30 job.xml
[2025-12-16 23:28:59] -rw-r--r-- 2 boincer umatlas 195216917 Dec 16 20:30 EVNT.47899040._000146.pool.root.1
[2025-12-16 23:28:59] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 20:30 start_atlas.sh
[2025-12-16 23:28:59] drwxrwx--x 2 boincer umatlas      4096 Dec 16 20:30 shared
[2025-12-16 23:28:59] -rw-r--r-- 2 boincer umatlas    592395 Dec 16 20:30 input.tar.gz
[2025-12-16 23:28:59] -rw-r--r-- 1 boincer umatlas         0 Dec 16 20:30 boinc_lockfile
[2025-12-16 23:28:59] -rw-r--r-- 1 boincer umatlas      2495 Dec 16 20:30 pandaJob.out
[2025-12-16 23:28:59] -rw------- 1 boincer umatlas        57 Dec 16 20:30 setup.sh.local
[2025-12-16 23:28:59] -rw------- 1 boincer umatlas    987393 Dec 16 20:30 agis_schedconf.cvmfs.json
[2025-12-16 23:28:59] -rw------- 1 boincer umatlas   1516240 Dec 16 20:30 agis_ddmendpoints.agis.ALL.json
[2025-12-16 23:28:59] drwx------ 5 boincer umatlas      4096 Dec 16 20:30 pilot3
[2025-12-16 23:28:59] -rw------- 1 boincer umatlas 181928320 Dec 16 23:27 HITS.47899042._003803.pool.root.1
[2025-12-16 23:28:59] -rw-r--r-- 1 boincer umatlas       530 Dec 16 23:27 boinc_task_state.xml
[2025-12-16 23:28:59] -rw-r--r-- 1 boincer umatlas      5951 Dec 16 23:27 init_data.xml
[2025-12-16 23:28:59] -rw------- 1 boincer umatlas      1050 Dec 16 23:27 memory_monitor_summary.json
[2025-12-16 23:28:59] -rw------- 1 boincer umatlas    416998 Dec 16 23:27 log.47899042._003803.job.log.tgz.1
[2025-12-16 23:28:59] -rw------- 1 boincer umatlas      7847 Dec 16 23:27 heartbeat.json
[2025-12-16 23:28:59] -rw------- 1 boincer umatlas        95 Dec 16 23:28 pilot_heartbeat.json
[2025-12-16 23:28:59] -rw-r--r-- 1 boincer umatlas      8192 Dec 16 23:28 boinc_mmap_file
[2025-12-16 23:28:59] -rw-r--r-- 1 boincer umatlas        28 Dec 16 23:28 wrapper_checkpoint.txt
[2025-12-16 23:28:59] -rw------- 1 boincer umatlas      4821 Dec 16 23:28 pilotlog.txt
[2025-12-16 23:28:59] -rw------- 1 boincer umatlas   1493012 Dec 16 23:28 log.47899042._003803.job.log.1
[2025-12-16 23:28:59] -rw------- 1 boincer umatlas       357 Dec 16 23:28 output.list
[2025-12-16 23:28:59] -rw-r--r-- 1 boincer umatlas       620 Dec 16 23:28 runtime_log
[2025-12-16 23:28:59] -rw------- 1 boincer umatlas   1925120 Dec 16 23:28 result.tar.gz
[2025-12-16 23:28:59] -rw-r--r-- 1 boincer umatlas      9343 Dec 16 23:28 runtime_log.err
[2025-12-16 23:28:59] -rw------- 1 boincer umatlas       660 Dec 16 23:28 Mb7NDmEWqp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmmBWKDmfJKTVn.diag
[2025-12-16 23:28:59] -rw-r--r-- 1 boincer umatlas     21097 Dec 16 23:28 stderr.txt
[2025-12-16 23:28:59] HITS file was successfully produced:
[2025-12-16 23:28:59] -rw------- 1 boincer umatlas 181928320 Dec 16 23:27 shared/HITS.pool.root.1
[2025-12-16 23:28:59]  *** Contents of shared directory: ***
[2025-12-16 23:28:59] total 370792
[2025-12-16 23:28:59] -rw-r--r-- 2 boincer umatlas 195216917 Dec 16 20:30 ATLAS.root_0
[2025-12-16 23:28:59] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 20:30 start_atlas.sh
[2025-12-16 23:28:59] -rw-r--r-- 2 boincer umatlas    592395 Dec 16 20:30 input.tar.gz
[2025-12-16 23:28:59] -rw------- 1 boincer umatlas 181928320 Dec 16 23:27 HITS.pool.root.1
[2025-12-16 23:28:59] -rw------- 1 boincer umatlas   1925120 Dec 16 23:28 result.tar.gz
23:29:01 (12262): run_atlas exited; CPU time 80280.682346
23:29:01 (12262): called boinc_finish(0)

</stderr_txt>
]]>

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