Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:20:39 (21625): wrapper (7.7.26015): starting
20:20:39 (21625): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 20:20:39] Arguments: --nthreads 8
[2025-12-16 20:20:39] Threads: 8
[2025-12-16 20:20:39] Checking for CVMFS
[2025-12-16 20:20:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 20:20:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 20:20:39] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 20:20:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 20:20:39] 2.11.2.0 3733 147272 149308 154094 0 104 13478780 18432000 1832 130560 0 109539101 99.978 5994904 32307 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-16 20:20:39] CVMFS is ok
[2025-12-16 20:20:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 20:20:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 20:20:39] Further information can be found at the LHC@home message board.
[2025-12-16 20:20:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 20:20:39] Checking for apptainer binary...
[2025-12-16 20:20:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 20:20:39] Running /usr/bin/apptainer --version
[2025-12-16 20:20:39] apptainer version 1.3.2-1.el7
[2025-12-16 20:20:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 20:20:40] c-206-23.aglt2.org
[2025-12-16 20:20:40] apptainer works
[2025-12-16 20:20:40] Set ATHENA_PROC_NUMBER=8
[2025-12-16 20:20:40] Set ATHENA_CORE_NUMBER=8
[2025-12-16 20:20:40] Starting ATLAS job with PandaID=6933463151
[2025-12-16 20:20:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 23:13:12]  *** The last 200 lines of the pilot log: ***
[2025-12-16 23:13:12] 2025-12-17 04:12:32,002 | INFO     | sufficient remaining disk space (27751612416 B)
[2025-12-16 23:13:12] 2025-12-17 04:12:32,002 | INFO     | sum of square deviations: 1496660620.0
[2025-12-16 23:13:12] 2025-12-17 04:12:32,002 | INFO     | work directory size check will use 2768240640 B as a max limit (20% grace limit added, divider=1)
[2025-12-16 23:13:12] 2025-12-17 04:12:32,003 | INFO     | sum of deviations: -17492354448.999996
[2025-12-16 23:13:12] 2025-12-17 04:12:32,003 | INFO     | mean x: 1765939598.0
[2025-12-16 23:13:12] 2025-12-17 04:12:32,003 | INFO     | mean y: 2504282.479289941
[2025-12-16 23:13:12] 2025-12-17 04:12:32,004 | INFO     | intersect: 20642080797.655167
[2025-12-16 23:13:12] 2025-12-17 04:12:32,004 | INFO     | chi2: 2.0303959343857474
[2025-12-16 23:13:12] 2025-12-17 04:12:32,004 | INFO     | sum of square deviations: 1367709365.0
[2025-12-16 23:13:12] 2025-12-17 04:12:32,005 | INFO     | sum of deviations: -5688067152.500004
[2025-12-16 23:13:12] 2025-12-17 04:12:32,005 | INFO     | mean x: 1765939445.5
[2025-12-16 23:13:12] 2025-12-17 04:12:32,005 | INFO     | mean y: 2517925.9329268294
[2025-12-16 23:13:12] 2025-12-17 04:12:32,006 | INFO     | intersect: 7346755240.01509
[2025-12-16 23:13:12] 2025-12-17 04:12:32,006 | INFO     | chi2: 1.2520655214434697
[2025-12-16 23:13:12] 2025-12-17 04:12:32,006 | INFO     | current chi2=1.2520655214434697 (change=38.33392294383927 %)
[2025-12-16 23:13:12] 2025-12-17 04:12:32,006 | INFO     | sum of square deviations: 1246386160.0
[2025-12-16 23:13:12] 2025-12-17 04:12:32,007 | INFO     | sum of deviations: -5255494284.0
[2025-12-16 23:13:12] 2025-12-17 04:12:32,007 | INFO     | mean x: 1765939293.0
[2025-12-16 23:13:12] 2025-12-17 04:12:32,008 | INFO     | mean y: 2518469.962264151
[2025-12-16 23:13:12] 2025-12-17 04:12:32,008 | INFO     | intersect: 7448753158.77853
[2025-12-16 23:13:12] 2025-12-17 04:12:32,008 | INFO     | chi2: 1.2518795071597046
[2025-12-16 23:13:12] 2025-12-17 04:12:32,008 | INFO     | current chi2=1.2518795071597046 (change=0.014856593411391816 %)
[2025-12-16 23:13:12] 2025-12-17 04:12:32,008 | INFO     | right removable region: 158
[2025-12-16 23:13:12] 2025-12-17 04:12:32,009 | INFO     | sum of square deviations: 1367709365.0
[2025-12-16 23:13:12] 2025-12-17 04:12:32,009 | INFO     | sum of deviations: -36629581980.500015
[2025-12-16 23:13:12] 2025-12-17 04:12:32,010 | INFO     | mean x: 1765939750.5
[2025-12-16 23:13:12] 2025-12-17 04:12:32,010 | INFO     | mean y: 2526486.0548780486
[2025-12-16 23:13:12] 2025-12-17 04:12:32,010 | INFO     | intersect: 47297395205.15844
[2025-12-16 23:13:12] 2025-12-17 04:12:32,010 | INFO     | chi2: 0.8500703914835832
[2025-12-16 23:13:12] 2025-12-17 04:12:32,010 | INFO     | current chi2=0.8500703914835832 (change=58.132777105823266 %)
[2025-12-16 23:13:12] 2025-12-17 04:12:32,011 | INFO     | sum of square deviations: 1246386160.0
[2025-12-16 23:13:12] 2025-12-17 04:12:32,012 | INFO     | sum of deviations: -31237522879.000053
[2025-12-16 23:13:12] 2025-12-17 04:12:32,012 | INFO     | mean x: 1765939903.0
[2025-12-16 23:13:12] 2025-12-17 04:12:32,012 | INFO     | mean y: 2519698.2012578617
[2025-12-16 23:13:12] 2025-12-17 04:12:32,012 | INFO     | intersect: 44261345648.981735
[2025-12-16 23:13:12] 2025-12-17 04:12:32,012 | INFO     | chi2: 0.8403079782470368
[2025-12-16 23:13:12] 2025-12-17 04:12:32,013 | INFO     | current chi2=0.8403079782470368 (change=1.1484240992688306 %)
[2025-12-16 23:13:12] 2025-12-17 04:12:32,013 | INFO     | left removable region: 20
[2025-12-16 23:13:12] 2025-12-17 04:12:32,013 | INFO     | sum of square deviations: 814878534.5
[2025-12-16 23:13:12] 2025-12-17 04:12:32,014 | INFO     | sum of deviations: -14845905561.000002
[2025-12-16 23:13:12] 2025-12-17 04:12:32,014 | INFO     | mean x: 1765939872.5
[2025-12-16 23:13:12] 2025-12-17 04:12:32,014 | INFO     | mean y: 2529814.4637681157
[2025-12-16 23:13:12] 2025-12-17 04:12:32,014 | INFO     | intersect: 32175394190.656742
[2025-12-16 23:13:12] 2025-12-17 04:12:32,015 | INFO     | chi2: 0.03514591678252633
[2025-12-16 23:13:12] 2025-12-17 04:12:32,015 | INFO     | size of work directory /tmp/boinchome/slots/2/PanDA_Pilot-6933463151: 3793277 B (within 2768240640 B limit)
[2025-12-16 23:13:12] 2025-12-17 04:12:32,015 | INFO     | current memory leak: -18.22 B/s (using 138 data points, chi2=0.04)
[2025-12-16 23:13:12] 2025-12-17 04:12:32,015 | INFO     | pfn file=/tmp/boinchome/slots/2/PanDA_Pilot-6933463151/HITS.47899042._003630.pool.root.1 does not exist (skip from workdir size calculation)
[2025-12-16 23:13:12] 2025-12-17 04:12:32,015 | INFO     | total size of present files: 0 B (workdir size: 3793277 B)
[2025-12-16 23:13:12] 2025-12-17 04:12:32,016 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/2/PanDA_Pilot-6933463151/HITS.47899042._003630.pool.root.1 since it does not exist
[2025-12-16 23:13:12] 2025-12-17 04:12:32,017 | INFO     | could have reported an average CPU frequency of 2468 MHz (9 samples)
[2025-12-16 23:13:12] 2025-12-17 04:12:32,017 | INFO     | ..............................
[2025-12-16 23:13:12] 2025-12-17 04:12:32,018 | INFO     | . Timing measurements:
[2025-12-16 23:13:12] 2025-12-17 04:12:32,018 | INFO     | . get job = 0 s
[2025-12-16 23:13:12] 2025-12-17 04:12:32,018 | INFO     | . initial setup = 2 s
[2025-12-16 23:13:12] 2025-12-17 04:12:32,018 | INFO     | . payload setup = 4 s
[2025-12-16 23:13:12] 2025-12-17 04:12:32,018 | INFO     | . stage-in = 0 s
[2025-12-16 23:13:12] 2025-12-17 04:12:32,018 | INFO     | . payload execution = 10271 s
[2025-12-16 23:13:12] 2025-12-17 04:12:32,018 | INFO     | . stage-out = 0 s
[2025-12-16 23:13:12] 2025-12-17 04:12:32,018 | INFO     | . log creation = 0 s
[2025-12-16 23:13:12] 2025-12-17 04:12:32,018 | INFO     | ..............................
[2025-12-16 23:13:12] 2025-12-17 04:12:32,211 | INFO     | number of running child processes to parent process 31765: 1
[2025-12-16 23:13:12] 2025-12-17 04:12:32,211 | INFO     | maximum number of monitored processes: 6
[2025-12-16 23:13:12] 2025-12-17 04:12:32,212 | INFO     | aborting job monitoring since job object (job id=6933463151) has expired
[2025-12-16 23:13:12] 2025-12-17 04:12:32,279 | INFO     | time since job start (10302s) is within the limit (174528.0s)
[2025-12-16 23:13:12] 2025-12-17 04:12:32,279 | INFO     | 10304s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-16 23:13:12] 2025-12-17 04:12:32,411 | INFO     | 
[2025-12-16 23:13:12] 2025-12-17 04:12:32,411 | INFO     | job summary report
[2025-12-16 23:13:12] 2025-12-17 04:12:32,412 | INFO     | --------------------------------------------------
[2025-12-16 23:13:12] 2025-12-17 04:12:32,412 | INFO     | PanDA job id: 6933463151
[2025-12-16 23:13:12] 2025-12-17 04:12:32,412 | INFO     | task id: 47899042
[2025-12-16 23:13:12] 2025-12-17 04:12:32,412 | INFO     | errors: (none)
[2025-12-16 23:13:12] 2025-12-17 04:12:32,412 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 23:13:12] 2025-12-17 04:12:32,412 | INFO     | pilot state: finished 
[2025-12-16 23:13:12] 2025-12-17 04:12:32,413 | INFO     | transexitcode: 0
[2025-12-16 23:13:12] 2025-12-17 04:12:32,413 | INFO     | exeerrorcode: 0
[2025-12-16 23:13:12] 2025-12-17 04:12:32,413 | INFO     | exeerrordiag: 
[2025-12-16 23:13:12] 2025-12-17 04:12:32,413 | INFO     | exitcode: 0
[2025-12-16 23:13:12] 2025-12-17 04:12:32,413 | INFO     | exitmsg: OK
[2025-12-16 23:13:12] 2025-12-17 04:12:32,413 | INFO     | cpuconsumptiontime: 78837 s
[2025-12-16 23:13:12] 2025-12-17 04:12:32,414 | INFO     | nevents: 400
[2025-12-16 23:13:12] 2025-12-17 04:12:32,414 | INFO     | neventsw: 0
[2025-12-16 23:13:12] 2025-12-17 04:12:32,414 | INFO     | pid: 31765
[2025-12-16 23:13:12] 2025-12-17 04:12:32,414 | INFO     | pgrp: 31765
[2025-12-16 23:13:12] 2025-12-17 04:12:32,414 | INFO     | corecount: 8
[2025-12-16 23:13:12] 2025-12-17 04:12:32,414 | INFO     | event service: False
[2025-12-16 23:13:12] 2025-12-17 04:12:32,415 | INFO     | sizes: {0: 2283768, 1: 2283967, 4: 2284229, 11: 2284257, 10280: 2312957, 10282: 2321955, 10284: 2322139, 10287: 2322425}
[2025-12-16 23:13:12] 2025-12-17 04:12:32,415 | INFO     | --------------------------------------------------
[2025-12-16 23:13:12] 2025-12-17 04:12:32,415 | INFO     | 
[2025-12-16 23:13:12] 2025-12-17 04:12:32,415 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-16 23:13:12] 2025-12-17 04:12:32,433 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 23:13:12] 2025-12-17 04:12:32,433 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 23:13:12] 2025-12-17 04:12:32,433 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 23:13:12] 2025-12-17 04:12:32,433 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 23:13:12] 2025-12-17 04:12:32,433 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 23:13:12] 2025-12-17 04:12:32,433 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 23:13:12] 2025-12-17 04:12:32,433 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 23:13:12] 2025-12-17 04:12:32,434 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 23:13:12] 2025-12-17 04:12:32,434 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 23:13:12] 2025-12-17 04:12:32,434 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 23:13:12] 2025-12-17 04:12:32,434 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 23:13:12] 2025-12-17 04:12:32,434 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 23:13:12] 2025-12-17 04:12:32,434 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 23:13:12] 2025-12-17 04:12:32,434 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 23:13:12] 2025-12-17 04:12:32,434 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 23:13:12] 2025-12-17 04:12:32,434 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 23:13:12] 2025-12-17 04:12:32,435 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 23:13:12] 2025-12-17 04:12:32,435 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 23:13:12] 2025-12-17 04:12:32,435 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 23:13:12] 2025-12-17 04:12:32,435 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 23:13:12] 2025-12-17 04:12:32,435 | INFO     | job 6933463151 has completed (purged errors)
[2025-12-16 23:13:12] 2025-12-17 04:12:32,435 | INFO     | overall cleanup function is called
[2025-12-16 23:13:12] 2025-12-17 04:12:33,442 | INFO     | --- collectZombieJob: --- 10, [31765]
[2025-12-16 23:13:12] 2025-12-17 04:12:33,443 | INFO     | zombie collector waiting for pid 31765
[2025-12-16 23:13:12] 2025-12-17 04:12:33,443 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 23:13:12] 2025-12-17 04:12:33,443 | INFO     | collected zombie processes
[2025-12-16 23:13:12] 2025-12-17 04:12:33,443 | INFO     | will attempt to kill all subprocesses of pid=31765
[2025-12-16 23:13:12] 2025-12-17 04:12:33,554 | INFO     | process IDs to be killed: [31765] (in reverse order)
[2025-12-16 23:13:12] 2025-12-17 04:12:33,593 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 23:13:12] 2025-12-17 04:12:33,594 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 23:13:12] 2025-12-17 04:12:33,596 | INFO     | did not find any defunct processes belonging to 31765
[2025-12-16 23:13:12] 2025-12-17 04:12:33,599 | INFO     | did not find any defunct processes belonging to 31765
[2025-12-16 23:13:12] 2025-12-17 04:12:33,599 | INFO     | ready for new job
[2025-12-16 23:13:12] 2025-12-17 04:12:33,599 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 23:13:12] 2025-12-17 04:12:33,601 | INFO     | ***************************************
[2025-12-16 23:13:12] 2025-12-17 04:12:33,601 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 23:13:12] 2025-12-17 04:12:33,601 | INFO     | ***************************************
[2025-12-16 23:13:12] 2025-12-17 04:12:33,601 | INFO     | 
[2025-12-16 23:13:12] 2025-12-17 04:12:33,602 | INFO     | architecture information:
[2025-12-16 23:13:12] 2025-12-17 04:12:33,602 | INFO     | executing command: cat /etc/os-release
[2025-12-16 23:13:12] 2025-12-17 04:12:33,614 | INFO     | cat /etc/os-release:
[2025-12-16 23:13:12] NAME="CentOS Linux"
[2025-12-16 23:13:12] VERSION="7 (Core)"
[2025-12-16 23:13:12] ID="centos"
[2025-12-16 23:13:12] ID_LIKE="rhel fedora"
[2025-12-16 23:13:12] VERSION_ID="7"
[2025-12-16 23:13:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 23:13:12] ANSI_COLOR="0;31"
[2025-12-16 23:13:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 23:13:12] HOME_URL="https://www.centos.org/"
[2025-12-16 23:13:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 23:13:12] 
[2025-12-16 23:13:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 23:13:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 23:13:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 23:13:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 23:13:12] 
[2025-12-16 23:13:12] 2025-12-17 04:12:33,614 | INFO     | ***************************************
[2025-12-16 23:13:12] 2025-12-17 04:12:34,117 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-16 23:13:12] 2025-12-17 04:12:34,151 | INFO     | sufficient remaining disk space (27756855296 B)
[2025-12-16 23:13:12] 2025-12-17 04:12:34,151 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 23:13:12] 2025-12-17 04:12:34,152 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 23:13:12] 2025-12-17 04:12:34,152 | INFO     | update_server=False
[2025-12-16 23:13:12] 2025-12-17 04:12:34,152 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 23:13:12] 2025-12-17 04:12:34,152 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-16 23:13:12] 2025-12-17 04:12:34,153 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 23:13:12] 2025-12-17 04:12:34,153 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 23:13:12] 2025-12-17 04:12:34,153 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 23:13:12] 2025-12-17 04:12:34,153 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 23:13:12] 2025-12-17 04:12:34,154 | INFO     | aborting loop
[2025-12-16 23:13:12] 2025-12-17 04:12:34,540 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 23:13:12] 2025-12-17 04:12:34,838 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 23:13:12] 2025-12-17 04:12:34,951 | INFO     | all data control threads have been joined
[2025-12-16 23:13:12] 2025-12-17 04:12:35,157 | INFO     | [job] retrieve thread has finished
[2025-12-16 23:13:12] 2025-12-17 04:12:35,159 | INFO     | [job] job monitor thread has finished
[2025-12-16 23:13:12] 2025-12-17 04:12:35,253 | INFO     | all payload control threads have been joined
[2025-12-16 23:13:12] 2025-12-17 04:12:35,433 | INFO     | [data] copytool_in thread has finished
[2025-12-16 23:13:12] 2025-12-17 04:12:35,448 | INFO     | all job control threads have been joined
[2025-12-16 23:13:12] 2025-12-17 04:12:35,470 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 23:13:12] 2025-12-17 04:12:35,773 | INFO     | [payload] validate_post thread has finished
[2025-12-16 23:13:12] 2025-12-17 04:12:35,937 | INFO     | [payload] failed_post thread has finished
[2025-12-16 23:13:12] 2025-12-17 04:12:35,957 | INFO     | [data] control thread has finished
[2025-12-16 23:13:12] 2025-12-17 04:12:36,258 | INFO     | [payload] control thread has finished
[2025-12-16 23:13:12] 2025-12-17 04:12:36,454 | INFO     | [job] control thread has finished
[2025-12-16 23:13:12] 2025-12-17 04:12:36,459 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 23:13:12] 2025-12-17 04:12:36,484 | INFO     | [job] validate thread has finished
[2025-12-16 23:13:12] 2025-12-17 04:12:36,497 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 23:13:12] 2025-12-17 04:12:36,844 | INFO     | [data] copytool_out thread has finished
[2025-12-16 23:13:12] 2025-12-17 04:12:37,109 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 23:13:12] 2025-12-17 04:12:38,115 | INFO     | [job] queue monitor thread has finished
[2025-12-16 23:13:12] 2025-12-17 04:12:38,559 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 23:13:12] 2025-12-17 04:12:44,444 | INFO     | job.realtimelogging is not enabled
[2025-12-16 23:13:12] 2025-12-17 04:12:45,450 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 23:13:12] 2025-12-17 04:13:07,204 | INFO     | [monitor] cgroup control has ended
[2025-12-16 23:13:12] 2025-12-17 04:13:07,400 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140522233583424)>', '<ExcThread(monitor, started 140521515243264)>']
[2025-12-16 23:13:12] 2025-12-17 04:13:08,333 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 23:13:12] 2025-12-17 04:13:08,334 | INFO     | [monitor] control thread has ended
[2025-12-16 23:13:12] 2025-12-17 04:13:12,422 | INFO     | all workflow threads have been joined
[2025-12-16 23:13:12] 2025-12-17 04:13:12,422 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 23:13:12] 2025-12-17 04:13:12,422 | INFO     | traces error code: 0
[2025-12-16 23:13:12] 2025-12-17 04:13:12,422 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 23:13:12] 2025-12-17 04:13:12,548 [wrapper] ==== pilot stdout END ====
[2025-12-16 23:13:12] 2025-12-17 04:13:12,578 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 23:13:12] 2025-12-17 04:13:12,581 [wrapper] pilotpid: 25319
[2025-12-16 23:13:12] 2025-12-17 04:13:12,584 [wrapper] Pilot exit status: 0
[2025-12-16 23:13:12] 2025-12-17 04:13:12,599 [wrapper] pandaids: 6933463151
[2025-12-16 23:13:12] 2025-12-17 04:13:12,637 [wrapper] cleanup supervisor_pilot  5912 25320
[2025-12-16 23:13:12] 2025-12-17 04:13:12,639 [wrapper] Test setup, not cleaning
[2025-12-16 23:13:12] 2025-12-17 04:13:12,641 [wrapper] apfmon messages muted
[2025-12-16 23:13:12] 2025-12-17 04:13:12,644 [wrapper] ==== wrapper stdout END ====
[2025-12-16 23:13:12] 2025-12-17 04:13:12,645 [wrapper] ==== wrapper stderr END ====
[2025-12-16 23:13:12]  *** Error codes and diagnostics ***
[2025-12-16 23:13:12]     "exeErrorCode": 0,
[2025-12-16 23:13:12]     "exeErrorDiag": "",
[2025-12-16 23:13:12]     "pilotErrorCode": 0,
[2025-12-16 23:13:12]     "pilotErrorDiag": "",
[2025-12-16 23:13:12]  *** Listing of results directory ***
[2025-12-16 23:13:12] total 369296
[2025-12-16 23:13:12] -rw-r--r-- 1 boincer umatlas    579449 Dec 16 15:04 pilot3.tar.gz
[2025-12-16 23:13:12] -rwx------ 1 boincer umatlas     36322 Dec 16 15:07 runpilot2-wrapper.sh
[2025-12-16 23:13:12] -rw-r--r-- 1 boincer umatlas      5112 Dec 16 15:08 queuedata.json
[2025-12-16 23:13:12] -rw-r--r-- 1 boincer umatlas       100 Dec 16 20:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 23:13:12] -rwxr-xr-x 1 boincer umatlas      7986 Dec 16 20:20 run_atlas
[2025-12-16 23:13:12] -rw-r--r-- 1 boincer umatlas       105 Dec 16 20:20 job.xml
[2025-12-16 23:13:12] -rw-r--r-- 2 boincer umatlas 194657225 Dec 16 20:20 EVNT.47899040._000139.pool.root.1
[2025-12-16 23:13:12] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 20:20 start_atlas.sh
[2025-12-16 23:13:12] drwxrwx--x 2 boincer umatlas      4096 Dec 16 20:20 shared
[2025-12-16 23:13:12] -rw-r--r-- 2 boincer umatlas    592395 Dec 16 20:20 input.tar.gz
[2025-12-16 23:13:12] -rw-r--r-- 1 boincer umatlas         0 Dec 16 20:20 boinc_lockfile
[2025-12-16 23:13:12] -rw-r--r-- 1 boincer umatlas      2495 Dec 16 20:20 pandaJob.out
[2025-12-16 23:13:12] -rw------- 1 boincer umatlas        57 Dec 16 20:20 setup.sh.local
[2025-12-16 23:13:12] -rw------- 1 boincer umatlas    987393 Dec 16 20:20 agis_schedconf.cvmfs.json
[2025-12-16 23:13:12] -rw------- 1 boincer umatlas   1516240 Dec 16 20:20 agis_ddmendpoints.agis.ALL.json
[2025-12-16 23:13:12] drwx------ 5 boincer umatlas      4096 Dec 16 20:20 pilot3
[2025-12-16 23:13:12] -rw-r--r-- 1 boincer umatlas      5951 Dec 16 23:09 init_data.xml
[2025-12-16 23:13:12] -rw------- 1 boincer umatlas 175874248 Dec 16 23:11 HITS.47899042._003630.pool.root.1
[2025-12-16 23:13:12] -rw-r--r-- 1 boincer umatlas       530 Dec 16 23:12 boinc_task_state.xml
[2025-12-16 23:13:12] -rw------- 1 boincer umatlas      1051 Dec 16 23:12 memory_monitor_summary.json
[2025-12-16 23:13:12] -rw------- 1 boincer umatlas    412758 Dec 16 23:12 log.47899042._003630.job.log.tgz.1
[2025-12-16 23:13:12] -rw------- 1 boincer umatlas        95 Dec 16 23:12 pilot_heartbeat.json
[2025-12-16 23:13:12] -rw------- 1 boincer umatlas      7856 Dec 16 23:12 heartbeat.json
[2025-12-16 23:13:12] -rw-r--r-- 1 boincer umatlas      8192 Dec 16 23:12 boinc_mmap_file
[2025-12-16 23:13:12] -rw-r--r-- 1 boincer umatlas        28 Dec 16 23:12 wrapper_checkpoint.txt
[2025-12-16 23:13:12] -rw------- 1 boincer umatlas      4624 Dec 16 23:13 pilotlog.txt
[2025-12-16 23:13:12] -rw------- 1 boincer umatlas   1445118 Dec 16 23:13 log.47899042._003630.job.log.1
[2025-12-16 23:13:12] -rw------- 1 boincer umatlas       357 Dec 16 23:13 output.list
[2025-12-16 23:13:12] -rw-r--r-- 1 boincer umatlas       620 Dec 16 23:13 runtime_log
[2025-12-16 23:13:12] -rw------- 1 boincer umatlas   1873920 Dec 16 23:13 result.tar.gz
[2025-12-16 23:13:12] -rw------- 1 boincer umatlas       662 Dec 16 23:13 ZopMDm4Vqp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm7AWKDmLqXWBn.diag
[2025-12-16 23:13:12] -rw-r--r-- 1 boincer umatlas      9343 Dec 16 23:13 runtime_log.err
[2025-12-16 23:13:12] -rw-r--r-- 1 boincer umatlas     21346 Dec 16 23:13 stderr.txt
[2025-12-16 23:13:12] HITS file was successfully produced:
[2025-12-16 23:13:12] -rw------- 1 boincer umatlas 175874248 Dec 16 23:11 shared/HITS.pool.root.1
[2025-12-16 23:13:12]  *** Contents of shared directory: ***
[2025-12-16 23:13:12] total 364284
[2025-12-16 23:13:12] -rw-r--r-- 2 boincer umatlas 194657225 Dec 16 20:20 ATLAS.root_0
[2025-12-16 23:13:12] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 20:20 start_atlas.sh
[2025-12-16 23:13:12] -rw-r--r-- 2 boincer umatlas    592395 Dec 16 20:20 input.tar.gz
[2025-12-16 23:13:12] -rw------- 1 boincer umatlas 175874248 Dec 16 23:11 HITS.pool.root.1
[2025-12-16 23:13:12] -rw------- 1 boincer umatlas   1873920 Dec 16 23:13 result.tar.gz
23:13:14 (21625): run_atlas exited; CPU time 78994.231184
23:13:14 (21625): called boinc_finish(0)

</stderr_txt>
]]>

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