Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:21:19 (775757): wrapper (7.7.26015): starting
09:21:19 (775757): wrapper: running run_atlas (--nthreads 3)
[2025-12-17 09:21:19] Arguments: --nthreads 3
[2025-12-17 09:21:19] Threads: 3
[2025-12-17 09:21:19] Checking for CVMFS
[2025-12-17 09:21:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 09:21:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 09:21:19] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 09:21:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 09:21:19] 2.9.2.0 3564296 5606 87560 154105 1 57 31115423 36864000 0 130560 0 3714547 99.989 209104 7275 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-17 09:21:19] CVMFS is ok
[2025-12-17 09:21:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 09:21:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 09:21:19] Further information can be found at the LHC@home message board.
[2025-12-17 09:21:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 09:21:19] Checking for apptainer binary...
[2025-12-17 09:21:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 09:21:19] Running /usr/bin/apptainer --version
[2025-12-17 09:21:19] apptainer version 1.4.1-1.1
[2025-12-17 09:21:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 09:21:19] thA371b
[2025-12-17 09:21:19] apptainer works
[2025-12-17 09:21:19] Set ATHENA_PROC_NUMBER=3
[2025-12-17 09:21:19] Set ATHENA_CORE_NUMBER=3
[2025-12-17 09:21:19] Starting ATLAS job with PandaID=6933463631
[2025-12-17 09:21:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 10:38:37]  *** The last 200 lines of the pilot log: ***
[2025-12-17 10:38:37] 2025-12-17 09:38:06,522 | INFO     | job 6933463631 has completed (purged errors)
[2025-12-17 10:38:37] 2025-12-17 09:38:06,522 | INFO     | overall cleanup function is called
[2025-12-17 10:38:37] 2025-12-17 09:38:07,529 | INFO     | --- collectZombieJob: --- 10, [785927]
[2025-12-17 10:38:37] 2025-12-17 09:38:07,529 | INFO     | zombie collector waiting for pid 785927
[2025-12-17 10:38:37] 2025-12-17 09:38:07,529 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 10:38:37] 2025-12-17 09:38:07,529 | INFO     | collected zombie processes
[2025-12-17 10:38:37] 2025-12-17 09:38:07,529 | INFO     | will attempt to kill all subprocesses of pid=785927
[2025-12-17 10:38:37] 2025-12-17 09:38:07,571 | INFO     | process IDs to be killed: [785927] (in reverse order)
[2025-12-17 10:38:37] 2025-12-17 09:38:07,595 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 10:38:37] 2025-12-17 09:38:07,595 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 10:38:37] 2025-12-17 09:38:07,597 | INFO     | did not find any defunct processes belonging to 785927
[2025-12-17 10:38:37] 2025-12-17 09:38:07,598 | INFO     | did not find any defunct processes belonging to 785927
[2025-12-17 10:38:37] 2025-12-17 09:38:07,598 | INFO     | ready for new job
[2025-12-17 10:38:37] 2025-12-17 09:38:07,598 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 10:38:37] 2025-12-17 09:38:07,598 | INFO     | ***************************************
[2025-12-17 10:38:37] 2025-12-17 09:38:07,598 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 10:38:37] 2025-12-17 09:38:07,598 | INFO     | ***************************************
[2025-12-17 10:38:37] 2025-12-17 09:38:07,599 | INFO     | 
[2025-12-17 10:38:37] 2025-12-17 09:38:07,599 | INFO     | architecture information:
[2025-12-17 10:38:37] 2025-12-17 09:38:07,599 | INFO     | executing command: cat /etc/os-release
[2025-12-17 10:38:37] 2025-12-17 09:38:07,608 | INFO     | cat /etc/os-release:
[2025-12-17 10:38:37] NAME="CentOS Linux"
[2025-12-17 10:38:37] VERSION="7 (Core)"
[2025-12-17 10:38:37] ID="centos"
[2025-12-17 10:38:37] ID_LIKE="rhel fedora"
[2025-12-17 10:38:37] VERSION_ID="7"
[2025-12-17 10:38:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 10:38:37] ANSI_COLOR="0;31"
[2025-12-17 10:38:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 10:38:37] HOME_URL="https://www.centos.org/"
[2025-12-17 10:38:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 10:38:37] 
[2025-12-17 10:38:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 10:38:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 10:38:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 10:38:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 10:38:37] 
[2025-12-17 10:38:37] 2025-12-17 09:38:07,608 | INFO     | ***************************************
[2025-12-17 10:38:37] 2025-12-17 09:38:08,111 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-17 10:38:37] 2025-12-17 09:38:08,124 | INFO     | sufficient remaining disk space (228609490944 B)
[2025-12-17 10:38:37] 2025-12-17 09:38:08,124 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 10:38:37] 2025-12-17 09:38:08,124 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 10:38:37] 2025-12-17 09:38:08,124 | INFO     | update_server=False
[2025-12-17 10:38:37] 2025-12-17 09:38:08,124 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 10:38:37] 2025-12-17 09:38:08,125 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-17 10:38:37] 2025-12-17 09:38:08,125 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 10:38:37] 2025-12-17 09:38:08,125 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 10:38:37] 2025-12-17 09:38:08,125 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 10:38:37] 2025-12-17 09:38:08,125 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 10:38:37] 2025-12-17 09:38:08,125 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 10:38:37] 2025-12-17 09:38:08,143 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-17 10:38:37] 2025-12-17 09:38:08,143 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-17 10:38:37] 2025-12-17 09:38:08,143 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 10:38:37] 2025-12-17 09:38:08,143 | INFO     | will abort loop
[2025-12-17 10:38:37] 2025-12-17 09:38:08,984 | INFO     | all data control threads have been joined
[2025-12-17 10:38:37] 2025-12-17 09:38:09,130 | INFO     | [job] retrieve thread has finished
[2025-12-17 10:38:37] 2025-12-17 09:38:09,130 | INFO     | [job] queue monitor thread has finished
[2025-12-17 10:38:37] 2025-12-17 09:38:09,148 | INFO     | [job] job monitor thread has finished
[2025-12-17 10:38:37] 2025-12-17 09:38:09,325 | INFO     | [payload] validate_post thread has finished
[2025-12-17 10:38:37] 2025-12-17 09:38:09,352 | INFO     | all payload control threads have been joined
[2025-12-17 10:38:37] 2025-12-17 09:38:09,800 | INFO     | all job control threads have been joined
[2025-12-17 10:38:37] 2025-12-17 09:38:09,895 | INFO     | [data] copytool_in thread has finished
[2025-12-17 10:38:37] 2025-12-17 09:38:09,982 | INFO     | [payload] failed_post thread has finished
[2025-12-17 10:38:37] 2025-12-17 09:38:09,990 | INFO     | [data] control thread has finished
[2025-12-17 10:38:37] 2025-12-17 09:38:10,131 | INFO     | [data] copytool_out thread has finished
[2025-12-17 10:38:37] 2025-12-17 09:38:10,197 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 10:38:37] 2025-12-17 09:38:10,358 | INFO     | [payload] control thread has finished
[2025-12-17 10:38:37] 2025-12-17 09:38:10,406 | INFO     | [job] validate thread has finished
[2025-12-17 10:38:37] 2025-12-17 09:38:10,519 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 10:38:37] 2025-12-17 09:38:10,604 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 10:38:37] 2025-12-17 09:38:10,619 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 10:38:37] 2025-12-17 09:38:10,806 | INFO     | [job] control thread has finished
[2025-12-17 10:38:37] 2025-12-17 09:38:10,886 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 10:38:37] 2025-12-17 09:38:14,893 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 10:38:37] 2025-12-17 09:38:30,132 | INFO     | [monitor] cgroup control has ended
[2025-12-17 10:38:37] 2025-12-17 09:38:32,157 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139904069191488)>', '<ExcThread(monitor, started 139903450998528)>']
[2025-12-17 10:38:37] 2025-12-17 09:38:32,252 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 10:38:37] 2025-12-17 09:38:32,252 | INFO     | [monitor] control thread has ended
[2025-12-17 10:38:37] 2025-12-17 09:38:37,182 | INFO     | all workflow threads have been joined
[2025-12-17 10:38:37] 2025-12-17 09:38:37,183 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 10:38:37] 2025-12-17 09:38:37,183 | INFO     | traces error code: 0
[2025-12-17 10:38:37] 2025-12-17 09:38:37,183 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 10:38:37] 2025-12-17 09:38:37,234 [wrapper] ==== pilot stdout END ====
[2025-12-17 10:38:37] 2025-12-17 09:38:37,236 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 10:38:37] 2025-12-17 09:38:37,238 [wrapper] pilotpid: 779481
[2025-12-17 10:38:37] 2025-12-17 09:38:37,240 [wrapper] Pilot exit status: 0
[2025-12-17 10:38:37] 2025-12-17 09:38:37,248 [wrapper] pandaids: 6933463631
[2025-12-17 10:38:37] 2025-12-17 09:38:37,263 [wrapper] cleanup supervisor_pilot  797674 779482
[2025-12-17 10:38:37] 2025-12-17 09:38:37,265 [wrapper] Test setup, not cleaning
[2025-12-17 10:38:37] 2025-12-17 09:38:37,267 [wrapper] apfmon messages muted
[2025-12-17 10:38:37] 2025-12-17 09:38:37,270 [wrapper] ==== wrapper stdout END ====
[2025-12-17 10:38:37] 2025-12-17 09:38:37,272 [wrapper] ==== wrapper stderr END ====
[2025-12-17 10:38:37]  *** Error codes and diagnostics ***
[2025-12-17 10:38:37]     "exeErrorCode": 0,
[2025-12-17 10:38:37]     "exeErrorDiag": "",
[2025-12-17 10:38:37]     "pilotErrorCode": 0,
[2025-12-17 10:38:37]     "pilotErrorDiag": "",
[2025-12-17 10:38:37]  *** Listing of results directory ***
[2025-12-17 10:38:37] total 367532
[2025-12-17 10:38:37] -rw-r--r-- 1 boinc boinc      5112 Dec 16 21:04 queuedata.json
[2025-12-17 10:38:37] -rw-r--r-- 1 boinc boinc    579449 Dec 16 21:04 pilot3.tar.gz
[2025-12-17 10:38:37] -rwx------ 1 boinc boinc     36322 Dec 16 21:04 runpilot2-wrapper.sh
[2025-12-17 10:38:37] -rw-r--r-- 1 boinc boinc       100 Dec 17 09:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 10:38:37] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 09:21 run_atlas
[2025-12-17 10:38:37] -rw-r--r-- 1 boinc boinc       105 Dec 17 09:21 job.xml
[2025-12-17 10:38:37] -rw-r--r-- 2 boinc boinc 195382897 Dec 17 09:21 EVNT.47899040._000148.pool.root.1
[2025-12-17 10:38:37] drwxrwx--x 2 boinc boinc      4096 Dec 17 09:21 shared
[2025-12-17 10:38:37] -rw-r--r-- 2 boinc boinc    592392 Dec 17 09:21 input.tar.gz
[2025-12-17 10:38:37] -rw-r--r-- 2 boinc boinc     15847 Dec 17 09:21 start_atlas.sh
[2025-12-17 10:38:37] -rw-r--r-- 1 boinc boinc         0 Dec 17 09:21 boinc_setup_complete
[2025-12-17 10:38:37] -rw-r--r-- 1 boinc boinc      6440 Dec 17 09:21 init_data.xml
[2025-12-17 10:38:37] -rw-r--r-- 1 boinc boinc         0 Dec 17 09:21 boinc_lockfile
[2025-12-17 10:38:37] -rw-r--r-- 1 boinc boinc      2495 Dec 17 09:21 pandaJob.out
[2025-12-17 10:38:37] -rw------- 1 boinc boinc    987417 Dec 17 09:21 agis_schedconf.cvmfs.json
[2025-12-17 10:38:37] -rw------- 1 boinc boinc   1516240 Dec 17 09:21 agis_ddmendpoints.agis.ALL.json
[2025-12-17 10:38:37] drwx------ 5 boinc boinc      4096 Dec 17 09:21 pilot3
[2025-12-17 10:38:37] -rw------- 1 boinc boinc 175206836 Dec 17 10:37 HITS.47899042._003852.pool.root.1
[2025-12-17 10:38:37] -rw-r--r-- 1 boinc boinc       529 Dec 17 10:37 boinc_task_state.xml
[2025-12-17 10:38:37] -rw------- 1 boinc boinc        95 Dec 17 10:37 pilot_heartbeat.json
[2025-12-17 10:38:37] -rw------- 1 boinc boinc      1020 Dec 17 10:37 memory_monitor_summary.json
[2025-12-17 10:38:37] -rw------- 1 boinc boinc    249344 Dec 17 10:37 log.47899042._003852.job.log.tgz.1
[2025-12-17 10:38:37] -rw------- 1 boinc boinc      7759 Dec 17 10:38 heartbeat.json
[2025-12-17 10:38:37] -rw-r--r-- 1 boinc boinc        27 Dec 17 10:38 wrapper_checkpoint.txt
[2025-12-17 10:38:37] -rw-r--r-- 1 boinc boinc      8192 Dec 17 10:38 boinc_mmap_file
[2025-12-17 10:38:37] -rw------- 1 boinc boinc      4742 Dec 17 10:38 pilotlog.txt
[2025-12-17 10:38:37] -rw------- 1 boinc boinc    679475 Dec 17 10:38 log.47899042._003852.job.log.1
[2025-12-17 10:38:37] -rw------- 1 boinc boinc       357 Dec 17 10:38 output.list
[2025-12-17 10:38:37] -rw-r--r-- 1 boinc boinc       620 Dec 17 10:38 runtime_log
[2025-12-17 10:38:37] -rw------- 1 boinc boinc    952320 Dec 17 10:38 result.tar.gz
[2025-12-17 10:38:37] -rw-r--r-- 1 boinc boinc      8902 Dec 17 10:38 runtime_log.err
[2025-12-17 10:38:37] -rw------- 1 boinc boinc       659 Dec 17 10:38 82wNDmxSqp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmB5VKDmW9qxen.diag
[2025-12-17 10:38:37] -rw-r--r-- 1 boinc boinc     10955 Dec 17 10:38 stderr.txt
[2025-12-17 10:38:37] HITS file was successfully produced:
[2025-12-17 10:38:37] -rw------- 1 boinc boinc 175206836 Dec 17 10:37 shared/HITS.pool.root.1
[2025-12-17 10:38:37]  *** Contents of shared directory: ***
[2025-12-17 10:38:37] total 363444
[2025-12-17 10:38:37] -rw-r--r-- 2 boinc boinc 195382897 Dec 17 09:21 ATLAS.root_0
[2025-12-17 10:38:37] -rw-r--r-- 2 boinc boinc    592392 Dec 17 09:21 input.tar.gz
[2025-12-17 10:38:37] -rw-r--r-- 2 boinc boinc     15847 Dec 17 09:21 start_atlas.sh
[2025-12-17 10:38:37] -rw------- 1 boinc boinc 175206836 Dec 17 10:37 HITS.pool.root.1
[2025-12-17 10:38:37] -rw------- 1 boinc boinc    952320 Dec 17 10:38 result.tar.gz
10:38:38 (775757): run_atlas exited; CPU time 13107.381901
10:38:38 (775757): called boinc_finish(0)

</stderr_txt>
]]>

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