Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:35:30 (17404): wrapper (7.7.26015): starting
19:35:30 (17404): wrapper: running run_atlas (--nthreads 12)
[2025-12-16 19:35:30] Arguments: --nthreads 12
[2025-12-16 19:35:30] Threads: 12
[2025-12-16 19:35:30] Checking for CVMFS
[2025-12-16 19:35:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 19:35:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 19:35:30] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 19:35:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 19:35:31] 2.11.2.0 2984 317163 93192 154093 1 57 18349722 20275201 1 130560 1 141935336 99.974 17782819 14948 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-16 19:35:31] CVMFS is ok
[2025-12-16 19:35:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 19:35:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 19:35:31] Further information can be found at the LHC@home message board.
[2025-12-16 19:35:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 19:35:31] Checking for apptainer binary...
[2025-12-16 19:35:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 19:35:31] Running /usr/bin/apptainer --version
[2025-12-16 19:35:31] apptainer version 1.3.2-1.el7
[2025-12-16 19:35:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 19:35:32] c-205-26.aglt2.org
[2025-12-16 19:35:32] apptainer works
[2025-12-16 19:35:32] Set ATHENA_PROC_NUMBER=12
[2025-12-16 19:35:32] Set ATHENA_CORE_NUMBER=12
[2025-12-16 19:35:32] Starting ATLAS job with PandaID=6930761563
[2025-12-16 19:35:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 20:53:00]  *** The last 200 lines of the pilot log: ***
[2025-12-16 20:53:00] 2025-12-17 01:52:19,826 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6930761563/log.47886831._012570.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886831._012570.job
[2025-12-16 20:53:00] 2025-12-17 01:52:19,849 | INFO     | adding to output.list: log.47886831._012570.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c2/df/log.47886831._012570.job.log.tg
[2025-12-16 20:53:00] 2025-12-17 01:52:19,850 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-16 20:53:00] 2025-12-17 01:52:19,850 | INFO     | summary of transferred files:
[2025-12-16 20:53:00] 2025-12-17 01:52:19,850 | INFO     |  -- lfn=log.47886831._012570.job.log.tgz.1, status_code=0, status=transferred
[2025-12-16 20:53:00] 2025-12-17 01:52:19,850 | INFO     | stage-out finished correctly
[2025-12-16 20:53:00] 2025-12-17 01:52:20,656 | INFO     | time since job start (4593s) is within the limit (174528.0s)
[2025-12-16 20:53:00] 2025-12-17 01:52:21,023 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-16 20:53:00] 2025-12-17 01:52:21,773 | INFO     | PID=21083 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 20:53:00] 2025-12-17 01:52:22,759 | INFO     | job 6930761563 has state=finished
[2025-12-16 20:53:00] 2025-12-17 01:52:22,760 | INFO     | preparing for final server update for job 6930761563 in state='finished'
[2025-12-16 20:53:00] 2025-12-17 01:52:22,760 | INFO     | this job has now completed (state=finished)
[2025-12-16 20:53:00] 2025-12-17 01:52:22,760 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-16 20:53:00] 2025-12-17 01:52:22,760 | INFO     | log transfer has been attempted: DONE
[2025-12-16 20:53:00] 2025-12-17 01:52:22,761 | INFO     | job 6930761563 has finished - writing final server update
[2025-12-16 20:53:00] 2025-12-17 01:52:22,761 | INFO     | total number of processed events: 400 (read)
[2025-12-16 20:53:00] 2025-12-17 01:52:22,762 | INFO     | executing command: lscpu
[2025-12-16 20:53:00] 2025-12-17 01:52:22,774 | INFO     | time since job start (4595s) is within the limit (174528.0s)
[2025-12-16 20:53:00] 2025-12-17 01:52:22,788 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-16 20:53:00] 2025-12-17 01:52:24,779 | INFO     | time since job start (4597s) is within the limit (174528.0s)
[2025-12-16 20:53:00] 2025-12-17 01:52:25,012 | WARNING  | process 27537 can no longer be monitored (due to stat problems) - aborting
[2025-12-16 20:53:00] 2025-12-17 01:52:25,012 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6930761563/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 20:53:00] 2025-12-17 01:52:25,013 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6930761563/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 20:53:00] 2025-12-17 01:52:25,013 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-12-16 20:53:00] 2025-12-17 01:52:25,013 | WARNING  | maxPSS not found in memory monitor output
[2025-12-16 20:53:00] 2025-12-17 01:52:25,014 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3797393 B
[2025-12-16 20:53:00] 2025-12-17 01:52:25,014 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15598 B
[2025-12-16 20:53:00] 2025-12-17 01:52:25,014 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-16 20:53:00] 2025-12-17 01:52:26,785 | INFO     | time since job start (4599s) is within the limit (174528.0s)
[2025-12-16 20:53:00] 2025-12-17 01:52:27,513 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-16 20:53:00] 2025-12-17 01:52:27,520 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1817.75
[2025-12-16 20:53:00] 2025-12-17 01:52:27,523 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6930761563/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 20:53:00] 2025-12-17 01:52:27,524 | INFO     | extracted standard info from prmon json
[2025-12-16 20:53:00] 2025-12-17 01:52:27,524 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 20:53:00] 2025-12-17 01:52:27,524 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 20:53:00] 2025-12-17 01:52:27,525 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 20:53:00] 2025-12-17 01:52:27,525 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 20:53:00] 2025-12-17 01:52:27,527 | INFO     | fitting pss+swap vs Time
[2025-12-16 20:53:00] 2025-12-17 01:52:27,527 | INFO     | sum of square deviations: 97479037.0
[2025-12-16 20:53:00] 2025-12-17 01:52:27,527 | INFO     | sum of deviations: -8911570459.0
[2025-12-16 20:53:00] 2025-12-17 01:52:27,527 | INFO     | mean x: 1765934124.5
[2025-12-16 20:53:00] 2025-12-17 01:52:27,528 | INFO     | mean y: 2794717.970588235
[2025-12-16 20:53:00] 2025-12-17 01:52:27,528 | INFO     | intersect: 161445160797.5024
[2025-12-16 20:53:00] 2025-12-17 01:52:27,528 | INFO     | chi2: 0.04967212049113514
[2025-12-16 20:53:00] 2025-12-17 01:52:27,528 | INFO     | current memory leak: -91.42 B/s (using 68 data points, chi2=0.05)
[2025-12-16 20:53:00] 2025-12-17 01:52:27,528 | INFO     | could have reported an average CPU frequency of 2060 MHz (6 samples)
[2025-12-16 20:53:00] 2025-12-17 01:52:27,529 | INFO     | ..............................
[2025-12-16 20:53:00] 2025-12-17 01:52:27,529 | INFO     | . Timing measurements:
[2025-12-16 20:53:00] 2025-12-17 01:52:27,529 | INFO     | . get job = 0 s
[2025-12-16 20:53:00] 2025-12-17 01:52:27,529 | INFO     | . initial setup = 2 s
[2025-12-16 20:53:00] 2025-12-17 01:52:27,529 | INFO     | . payload setup = 7 s
[2025-12-16 20:53:00] 2025-12-17 01:52:27,529 | INFO     | . stage-in = 0 s
[2025-12-16 20:53:00] 2025-12-17 01:52:27,529 | INFO     | . payload execution = 4564 s
[2025-12-16 20:53:00] 2025-12-17 01:52:27,529 | INFO     | . stage-out = 0 s
[2025-12-16 20:53:00] 2025-12-17 01:52:27,529 | INFO     | . log creation = 0 s
[2025-12-16 20:53:00] 2025-12-17 01:52:27,530 | INFO     | ..............................
[2025-12-16 20:53:00] 2025-12-17 01:52:27,543 | INFO     | sufficient remaining disk space (29451354112 B)
[2025-12-16 20:53:00] 2025-12-17 01:52:27,553 | INFO     | work directory size check will use 2768240640 B as a max limit (20% grace limit added, divider=1)
[2025-12-16 20:53:00] 2025-12-17 01:52:27,611 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6930761563: 4095849 B (within 2768240640 B limit)
[2025-12-16 20:53:00] 2025-12-17 01:52:27,611 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6930761563/HITS.47886831._012570.pool.root.1 does not exist (skip from workdir size calculation)
[2025-12-16 20:53:00] 2025-12-17 01:52:27,611 | INFO     | total size of present files: 0 B (workdir size: 4095849 B)
[2025-12-16 20:53:00] 2025-12-17 01:52:27,612 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6930761563/HITS.47886831._012570.pool.root.1 since it does not exist
[2025-12-16 20:53:00] 2025-12-17 01:52:27,701 | INFO     | number of running child processes to parent process 27537: 1
[2025-12-16 20:53:00] 2025-12-17 01:52:27,702 | INFO     | maximum number of monitored processes: 6
[2025-12-16 20:53:00] 2025-12-17 01:52:27,702 | INFO     | aborting job monitoring since job object (job id=6930761563) has expired
[2025-12-16 20:53:00] 2025-12-17 01:52:27,822 | INFO     | 
[2025-12-16 20:53:00] 2025-12-17 01:52:27,822 | INFO     | job summary report
[2025-12-16 20:53:00] 2025-12-17 01:52:27,823 | INFO     | --------------------------------------------------
[2025-12-16 20:53:00] 2025-12-17 01:52:27,823 | INFO     | PanDA job id: 6930761563
[2025-12-16 20:53:00] 2025-12-17 01:52:27,823 | INFO     | task id: 47886831
[2025-12-16 20:53:00] 2025-12-17 01:52:27,823 | INFO     | errors: (none)
[2025-12-16 20:53:00] 2025-12-17 01:52:27,823 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 20:53:00] 2025-12-17 01:52:27,824 | INFO     | pilot state: finished 
[2025-12-16 20:53:00] 2025-12-17 01:52:27,824 | INFO     | transexitcode: 0
[2025-12-16 20:53:00] 2025-12-17 01:52:27,824 | INFO     | exeerrorcode: 0
[2025-12-16 20:53:00] 2025-12-17 01:52:27,824 | INFO     | exeerrordiag: 
[2025-12-16 20:53:00] 2025-12-17 01:52:27,824 | INFO     | exitcode: 0
[2025-12-16 20:53:00] 2025-12-17 01:52:27,824 | INFO     | exitmsg: OK
[2025-12-16 20:53:00] 2025-12-17 01:52:27,824 | INFO     | cpuconsumptiontime: 50255 s
[2025-12-16 20:53:00] 2025-12-17 01:52:27,825 | INFO     | nevents: 400
[2025-12-16 20:53:00] 2025-12-17 01:52:27,825 | INFO     | neventsw: 0
[2025-12-16 20:53:00] 2025-12-17 01:52:27,825 | INFO     | pid: 27537
[2025-12-16 20:53:00] 2025-12-17 01:52:27,825 | INFO     | pgrp: 27537
[2025-12-16 20:53:00] 2025-12-17 01:52:27,825 | INFO     | corecount: 12
[2025-12-16 20:53:00] 2025-12-17 01:52:27,825 | INFO     | event service: False
[2025-12-16 20:53:00] 2025-12-17 01:52:27,826 | INFO     | sizes: {0: 2283820, 1: 2284019, 5: 2284281, 11: 2284337, 4575: 2310461, 4576: 2319459, 4577: 2319643, 4584: 2319837}
[2025-12-16 20:53:00] 2025-12-17 01:52:27,826 | INFO     | --------------------------------------------------
[2025-12-16 20:53:00] 2025-12-17 01:52:27,826 | INFO     | 
[2025-12-16 20:53:00] 2025-12-17 01:52:27,826 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-16 20:53:00] 2025-12-17 01:52:27,849 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 20:53:00] 2025-12-17 01:52:27,850 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 20:53:00] 2025-12-17 01:52:27,850 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 20:53:00] 2025-12-17 01:52:27,850 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 20:53:00] 2025-12-17 01:52:27,850 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 20:53:00] 2025-12-17 01:52:27,850 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 20:53:00] 2025-12-17 01:52:27,851 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 20:53:00] 2025-12-17 01:52:27,851 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 20:53:00] 2025-12-17 01:52:27,851 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 20:53:00] 2025-12-17 01:52:27,851 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 20:53:00] 2025-12-17 01:52:27,851 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 20:53:00] 2025-12-17 01:52:27,851 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 20:53:00] 2025-12-17 01:52:27,852 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 20:53:00] 2025-12-17 01:52:27,852 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 20:53:00] 2025-12-17 01:52:27,852 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 20:53:00] 2025-12-17 01:52:27,852 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 20:53:00] 2025-12-17 01:52:27,852 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 20:53:00] 2025-12-17 01:52:27,853 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 20:53:00] 2025-12-17 01:52:27,853 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 20:53:00] 2025-12-17 01:52:27,853 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 20:53:00] 2025-12-17 01:52:27,853 | INFO     | job 6930761563 has completed (purged errors)
[2025-12-16 20:53:00] 2025-12-17 01:52:27,853 | INFO     | overall cleanup function is called
[2025-12-16 20:53:00] 2025-12-17 01:52:28,861 | INFO     | --- collectZombieJob: --- 10, [27537]
[2025-12-16 20:53:00] 2025-12-17 01:52:28,861 | INFO     | zombie collector waiting for pid 27537
[2025-12-16 20:53:00] 2025-12-17 01:52:28,862 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 20:53:00] 2025-12-17 01:52:28,862 | INFO     | collected zombie processes
[2025-12-16 20:53:00] 2025-12-17 01:52:28,862 | INFO     | will attempt to kill all subprocesses of pid=27537
[2025-12-16 20:53:00] 2025-12-17 01:52:28,952 | INFO     | process IDs to be killed: [27537] (in reverse order)
[2025-12-16 20:53:00] 2025-12-17 01:52:29,003 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 20:53:00] 2025-12-17 01:52:29,003 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 20:53:00] 2025-12-17 01:52:29,006 | INFO     | did not find any defunct processes belonging to 27537
[2025-12-16 20:53:00] 2025-12-17 01:52:29,009 | INFO     | did not find any defunct processes belonging to 27537
[2025-12-16 20:53:00] 2025-12-17 01:52:29,009 | INFO     | ready for new job
[2025-12-16 20:53:00] 2025-12-17 01:52:29,009 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 20:53:00] 2025-12-17 01:52:29,010 | INFO     | ***************************************
[2025-12-16 20:53:00] 2025-12-17 01:52:29,010 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 20:53:00] 2025-12-17 01:52:29,010 | INFO     | ***************************************
[2025-12-16 20:53:00] 2025-12-17 01:52:29,010 | INFO     | 
[2025-12-16 20:53:00] 2025-12-17 01:52:29,011 | INFO     | architecture information:
[2025-12-16 20:53:00] 2025-12-17 01:52:29,011 | INFO     | executing command: cat /etc/os-release
[2025-12-16 20:53:00] 2025-12-17 01:52:29,028 | INFO     | cat /etc/os-release:
[2025-12-16 20:53:00] NAME="CentOS Linux"
[2025-12-16 20:53:00] VERSION="7 (Core)"
[2025-12-16 20:53:00] ID="centos"
[2025-12-16 20:53:00] ID_LIKE="rhel fedora"
[2025-12-16 20:53:00] VERSION_ID="7"
[2025-12-16 20:53:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 20:53:00] ANSI_COLOR="0;31"
[2025-12-16 20:53:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 20:53:00] HOME_URL="https://www.centos.org/"
[2025-12-16 20:53:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 20:53:00] 
[2025-12-16 20:53:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 20:53:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 20:53:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 20:53:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 20:53:00] 
[2025-12-16 20:53:00] 2025-12-17 01:52:29,028 | INFO     | ***************************************
[2025-12-16 20:53:00] 2025-12-17 01:52:29,531 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-16 20:53:00] 2025-12-17 01:52:29,549 | INFO     | sufficient remaining disk space (29456596992 B)
[2025-12-16 20:53:00] 2025-12-17 01:52:29,549 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 20:53:00] 2025-12-17 01:52:29,550 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 20:53:00] 2025-12-17 01:52:29,550 | INFO     | update_server=False
[2025-12-16 20:53:00] 2025-12-17 01:52:29,550 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 20:53:00] 2025-12-17 01:52:29,550 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 20:53:00] 2025-12-17 01:52:29,551 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 20:53:00] 2025-12-17 01:52:29,551 | INFO     | aborting loop
[2025-12-16 20:53:00] 2025-12-17 01:52:30,317 | INFO     | all data control threads have been joined
[2025-12-16 20:53:00] 2025-12-17 01:52:30,446 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 20:53:00] 2025-12-17 01:52:30,552 | INFO     | [job] queue monitor thread has finished
[2025-12-16 20:53:00] 2025-12-17 01:52:30,556 | INFO     | [job] retrieve thread has finished
[2025-12-16 20:53:00] 2025-12-17 01:52:30,556 | INFO     | [job] job monitor thread has finished
[2025-12-16 20:53:00] 2025-12-17 01:52:30,594 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 20:53:00] 2025-12-17 01:52:30,604 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 20:53:00] 2025-12-17 01:52:30,708 | INFO     | [payload] failed_post thread has finished
[2025-12-16 20:53:00] 2025-12-17 01:52:30,821 | INFO     | all payload control threads have been joined
[2025-12-16 20:53:00] 2025-12-17 01:52:30,909 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 20:53:00] 2025-12-17 01:52:31,231 | INFO     | all job control threads have been joined
[2025-12-16 20:53:00] 2025-12-17 01:52:31,322 | INFO     | [data] control thread has finished
[2025-12-16 20:53:00] 2025-12-17 01:52:31,332 | INFO     | [data] copytool_in thread has finished
[2025-12-16 20:53:00] 2025-12-17 01:52:31,380 | INFO     | [payload] validate_post thread has finished
[2025-12-16 20:53:00] 2025-12-17 01:52:31,614 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 20:53:00] 2025-12-17 01:52:31,826 | INFO     | [payload] control thread has finished
[2025-12-16 20:53:00] 2025-12-17 01:52:31,887 | INFO     | [job] validate thread has finished
[2025-12-16 20:53:00] 2025-12-17 01:52:32,236 | INFO     | [job] control thread has finished
[2025-12-16 20:53:00] 2025-12-17 01:52:32,450 | INFO     | [data] copytool_out thread has finished
[2025-12-16 20:53:00] 2025-12-17 01:52:35,620 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 20:53:00] 2025-12-17 01:52:40,388 | INFO     | job.realtimelogging is not enabled
[2025-12-16 20:53:00] 2025-12-17 01:52:41,389 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 20:53:00] 2025-12-17 01:52:54,521 | INFO     | [monitor] cgroup control has ended
[2025-12-16 20:53:00] 2025-12-17 01:52:55,526 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139858789820224)>', '<ExcThread(monitor, started 139858194446080)>']
[2025-12-16 20:53:00] 2025-12-17 01:52:59,990 | INFO     | PID=21083 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 20:53:00] 2025-12-17 01:52:59,991 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 20:53:00] 2025-12-17 01:52:59,991 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 20:53:00] 2025-12-17 01:52:59,991 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 20:53:00] 2025-12-17 01:52:59,991 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 20:53:00] 2025-12-17 01:52:59,991 | INFO     | [monitor] control thread has ended
[2025-12-16 20:53:00] 2025-12-17 01:53:00,533 | INFO     | all workflow threads have been joined
[2025-12-16 20:53:00] 2025-12-17 01:53:00,533 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 20:53:00] 2025-12-17 01:53:00,533 | INFO     | traces error code: 0
[2025-12-16 20:53:00] 2025-12-17 01:53:00,534 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 20:53:00] 2025-12-17 01:53:00,616 [wrapper] ==== pilot stdout END ====
[2025-12-16 20:53:00] 2025-12-17 01:53:00,620 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 20:53:00] 2025-12-17 01:53:00,624 [wrapper] pilotpid: 21083
[2025-12-16 20:53:00] 2025-12-17 01:53:00,627 [wrapper] Pilot exit status: 0
[2025-12-16 20:53:00] 2025-12-17 01:53:00,643 [wrapper] pandaids: 6930761563
[2025-12-16 20:53:00] 2025-12-17 01:53:00,683 [wrapper] cleanup supervisor_pilot 23365 21084
[2025-12-16 20:53:00] 2025-12-17 01:53:00,687 [wrapper] Test setup, not cleaning
[2025-12-16 20:53:00] 2025-12-17 01:53:00,690 [wrapper] apfmon messages muted
[2025-12-16 20:53:00] 2025-12-17 01:53:00,694 [wrapper] ==== wrapper stdout END ====
[2025-12-16 20:53:00] 2025-12-17 01:53:00,698 [wrapper] ==== wrapper stderr END ====
[2025-12-16 20:53:00]  *** Error codes and diagnostics ***
[2025-12-16 20:53:00]     "exeErrorCode": 0,
[2025-12-16 20:53:00]     "exeErrorDiag": "",
[2025-12-16 20:53:00]     "pilotErrorCode": 0,
[2025-12-16 20:53:00]     "pilotErrorDiag": "",
[2025-12-16 20:53:00]  *** Listing of results directory ***
[2025-12-16 20:53:00] total 335992
[2025-12-16 20:53:00] -rw-r--r-- 1 boincer umatlas    579449 Dec 16 01:04 pilot3.tar.gz
[2025-12-16 20:53:00] -rwx------ 1 boincer umatlas     36322 Dec 16 01:08 runpilot2-wrapper.sh
[2025-12-16 20:53:00] -rw-r--r-- 1 boincer umatlas      5112 Dec 16 01:11 queuedata.json
[2025-12-16 20:53:00] -rw-r--r-- 1 boincer umatlas       100 Dec 16 19:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 20:53:00] -rwxr-xr-x 1 boincer umatlas      7986 Dec 16 19:35 run_atlas
[2025-12-16 20:53:00] -rw-r--r-- 1 boincer umatlas       105 Dec 16 19:35 job.xml
[2025-12-16 20:53:00] -rw-r--r-- 2 boincer umatlas 192288300 Dec 16 19:35 EVNT.47886829._000517.pool.root.1
[2025-12-16 20:53:00] drwxrwx--x 2 boincer umatlas      4096 Dec 16 19:35 shared
[2025-12-16 20:53:00] -rw-r--r-- 2 boincer umatlas    592419 Dec 16 19:35 input.tar.gz
[2025-12-16 20:53:00] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 19:35 start_atlas.sh
[2025-12-16 20:53:00] -rw-r--r-- 1 boincer umatlas         0 Dec 16 19:35 boinc_lockfile
[2025-12-16 20:53:00] -rw-r--r-- 1 boincer umatlas      2538 Dec 16 19:35 pandaJob.out
[2025-12-16 20:53:00] -rw------- 1 boincer umatlas        57 Dec 16 19:35 setup.sh.local
[2025-12-16 20:53:00] -rw------- 1 boincer umatlas    987401 Dec 16 19:35 agis_schedconf.cvmfs.json
[2025-12-16 20:53:00] -rw------- 1 boincer umatlas   1516240 Dec 16 19:35 agis_ddmendpoints.agis.ALL.json
[2025-12-16 20:53:00] drwx------ 5 boincer umatlas      4096 Dec 16 19:35 pilot3
[2025-12-16 20:53:00] -rw-r--r-- 1 boincer umatlas      5953 Dec 16 20:49 init_data.xml
[2025-12-16 20:53:00] -rw------- 1 boincer umatlas 145777656 Dec 16 20:51 HITS.47886831._012570.pool.root.1
[2025-12-16 20:53:00] -rw------- 1 boincer umatlas      1043 Dec 16 20:52 memory_monitor_summary.json
[2025-12-16 20:53:00] -rw------- 1 boincer umatlas    370377 Dec 16 20:52 log.47886831._012570.job.log.tgz.1
[2025-12-16 20:53:00] -rw-r--r-- 1 boincer umatlas       529 Dec 16 20:52 boinc_task_state.xml
[2025-12-16 20:53:00] -rw------- 1 boincer umatlas      7850 Dec 16 20:52 heartbeat.json
[2025-12-16 20:53:00] -rw-r--r-- 1 boincer umatlas      8192 Dec 16 20:52 boinc_mmap_file
[2025-12-16 20:53:00] -rw-r--r-- 1 boincer umatlas        27 Dec 16 20:52 wrapper_checkpoint.txt
[2025-12-16 20:53:00] -rw------- 1 boincer umatlas        95 Dec 16 20:52 pilot_heartbeat.json
[2025-12-16 20:53:00] -rw------- 1 boincer umatlas      4818 Dec 16 20:53 pilotlog.txt
[2025-12-16 20:53:00] -rw------- 1 boincer umatlas    666473 Dec 16 20:53 log.47886831._012570.job.log.1
[2025-12-16 20:53:00] -rw------- 1 boincer umatlas       357 Dec 16 20:53 output.list
[2025-12-16 20:53:00] -rw-r--r-- 1 boincer umatlas       620 Dec 16 20:53 runtime_log
[2025-12-16 20:53:00] -rw------- 1 boincer umatlas   1054720 Dec 16 20:53 result.tar.gz
[2025-12-16 20:53:00] -rw-r--r-- 1 boincer umatlas      9344 Dec 16 20:53 runtime_log.err
[2025-12-16 20:53:00] -rw------- 1 boincer umatlas       659 Dec 16 20:53 bYWKDmTPdp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmuGVKDmvU3lbm.diag
[2025-12-16 20:53:00] -rw-r--r-- 1 boincer umatlas     22769 Dec 16 20:53 stderr.txt
[2025-12-16 20:53:00] HITS file was successfully produced:
[2025-12-16 20:53:00] -rw------- 1 boincer umatlas 145777656 Dec 16 20:51 shared/HITS.pool.root.1
[2025-12-16 20:53:00]  *** Contents of shared directory: ***
[2025-12-16 20:53:00] total 331780
[2025-12-16 20:53:00] -rw-r--r-- 2 boincer umatlas 192288300 Dec 16 19:35 ATLAS.root_0
[2025-12-16 20:53:00] -rw-r--r-- 2 boincer umatlas    592419 Dec 16 19:35 input.tar.gz
[2025-12-16 20:53:00] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 19:35 start_atlas.sh
[2025-12-16 20:53:00] -rw------- 1 boincer umatlas 145777656 Dec 16 20:51 HITS.pool.root.1
[2025-12-16 20:53:00] -rw------- 1 boincer umatlas   1054720 Dec 16 20:53 result.tar.gz
20:53:02 (17404): run_atlas exited; CPU time 50229.739709
20:53:02 (17404): called boinc_finish(0)

</stderr_txt>
]]>

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