Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:04:04 (984023): wrapper (7.7.26015): starting
12:04:04 (984023): wrapper: running run_atlas (--nthreads 3)
[2025-12-17 12:04:04] Arguments: --nthreads 3
[2025-12-17 12:04:04] Threads: 3
[2025-12-17 12:04:04] Checking for CVMFS
[2025-12-17 12:04:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 12:04:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 12:04:04] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 12:04:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 12:04:05] 2.13.3.0 702082 1460 60620 154095 1 57 28164036 31457281 0 130560 0 866927 99.988 55994 16 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-12-17 12:04:05] CVMFS is ok
[2025-12-17 12:04:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 12:04:05] Checking for apptainer binary...
[2025-12-17 12:04:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 12:04:05] Running /usr/bin/apptainer --version
[2025-12-17 12:04:05] apptainer version 1.4.4-1.el9
[2025-12-17 12:04:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 12:04:05] testio001
[2025-12-17 12:04:05] apptainer works
[2025-12-17 12:04:05] Set ATHENA_PROC_NUMBER=3
[2025-12-17 12:04:05] Set ATHENA_CORE_NUMBER=3
[2025-12-17 12:04:05] Starting ATLAS job with PandaID=6930759674
[2025-12-17 12:04:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 14:47:37]  *** The last 200 lines of the pilot log: ***
[2025-12-17 14:47:37] 2025-12-17 05:46:30,279 | INFO     | time since job start (9736s) is within the limit (174528.0s)
[2025-12-17 14:47:37] 2025-12-17 05:46:31,664 | INFO     | monitor loop #701: job 0:6930759674 is in state 'finished'
[2025-12-17 14:47:37] 2025-12-17 05:46:31,664 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 14:47:37] 2025-12-17 05:46:32,001 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-17 14:47:37] 2025-12-17 05:46:32,002 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 3652.6112500000004
[2025-12-17 14:47:37] 2025-12-17 05:46:32,003 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6930759674/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 14:47:37] 2025-12-17 05:46:32,003 | INFO     | extracted standard info from prmon json
[2025-12-17 14:47:37] 2025-12-17 05:46:32,003 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 14:47:37] 2025-12-17 05:46:32,003 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 14:47:37] 2025-12-17 05:46:32,003 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 14:47:37] 2025-12-17 05:46:32,003 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 14:47:37] 2025-12-17 05:46:32,005 | INFO     | fitting pss+swap vs Time
[2025-12-17 14:47:37] 2025-12-17 05:46:32,005 | INFO     | sum of square deviations: 1270048673.975002
[2025-12-17 14:47:37] 2025-12-17 05:46:32,005 | INFO     | sum of deviations: 17422210919.749977
[2025-12-17 14:47:37] 2025-12-17 05:46:32,005 | INFO     | mean x: 1765945525.5125
[2025-12-17 14:47:37] 2025-12-17 05:46:32,005 | INFO     | mean y: 2298650.125
[2025-12-17 14:47:37] 2025-12-17 05:46:32,005 | INFO     | intersect: -24222501586.84061
[2025-12-17 14:47:37] 2025-12-17 05:46:32,006 | INFO     | chi2: 2.298895236802797
[2025-12-17 14:47:37] 2025-12-17 05:46:32,006 | INFO     | sum of square deviations: 1154661073.9741974
[2025-12-17 14:47:37] 2025-12-17 05:46:32,006 | INFO     | sum of deviations: 25785191818.283897
[2025-12-17 14:47:37] 2025-12-17 05:46:32,006 | INFO     | mean x: 1765945373.0129032
[2025-12-17 14:47:37] 2025-12-17 05:46:32,006 | INFO     | mean y: 2309400.858064516
[2025-12-17 14:47:37] 2025-12-17 05:46:32,006 | INFO     | intersect: -39433713177.630775
[2025-12-17 14:47:37] 2025-12-17 05:46:32,006 | INFO     | chi2: 1.6567283153687413
[2025-12-17 14:47:37] 2025-12-17 05:46:32,006 | INFO     | current chi2=1.6567283153687413 (change=27.93371838584316 %)
[2025-12-17 14:47:37] 2025-12-17 05:46:32,006 | INFO     | sum of square deviations: 1046482911.4733332
[2025-12-17 14:47:37] 2025-12-17 05:46:32,007 | INFO     | sum of deviations: 24958381331.75333
[2025-12-17 14:47:37] 2025-12-17 05:46:32,007 | INFO     | mean x: 1765945220.5133333
[2025-12-17 14:47:37] 2025-12-17 05:46:32,007 | INFO     | mean y: 2308234.8733333335
[2025-12-17 14:47:37] 2025-12-17 05:46:32,007 | INFO     | intersect: -42115086842.80264
[2025-12-17 14:47:37] 2025-12-17 05:46:32,007 | INFO     | chi2: 1.6579201084093023
[2025-12-17 14:47:37] 2025-12-17 05:46:32,007 | INFO     | current chi2=1.6579201084093023 (change=-0.07193654080184417 %)
[2025-12-17 14:47:37] 2025-12-17 05:46:32,007 | INFO     | right removable region: 149
[2025-12-17 14:47:37] 2025-12-17 05:46:32,007 | INFO     | sum of square deviations: 1154659853.9741974
[2025-12-17 14:47:37] 2025-12-17 05:46:32,008 | INFO     | sum of deviations: -9257754888.503225
[2025-12-17 14:47:37] 2025-12-17 05:46:32,008 | INFO     | mean x: 1765945678.0129032
[2025-12-17 14:47:37] 2025-12-17 05:46:32,008 | INFO     | mean y: 2333562.251612903
[2025-12-17 14:47:37] 2025-12-17 05:46:32,008 | INFO     | intersect: 14161215225.266836
[2025-12-17 14:47:37] 2025-12-17 05:46:32,008 | INFO     | chi2: 0.6792196337117526
[2025-12-17 14:47:37] 2025-12-17 05:46:32,008 | INFO     | current chi2=0.6792196337117526 (change=70.45451994339761 %)
[2025-12-17 14:47:37] 2025-12-17 05:46:32,008 | INFO     | sum of square deviations: 1046480471.4733332
[2025-12-17 14:47:37] 2025-12-17 05:46:32,008 | INFO     | sum of deviations: -6944860263.046666
[2025-12-17 14:47:37] 2025-12-17 05:46:32,008 | INFO     | mean x: 1765945830.5133333
[2025-12-17 14:47:37] 2025-12-17 05:46:32,008 | INFO     | mean y: 2330334.2733333334
[2025-12-17 14:47:37] 2025-12-17 05:46:32,008 | INFO     | intersect: 11721848623.762514
[2025-12-17 14:47:37] 2025-12-17 05:46:32,009 | INFO     | chi2: 0.6667301622574289
[2025-12-17 14:47:37] 2025-12-17 05:46:32,009 | INFO     | current chi2=0.6667301622574289 (change=1.8387971775892538 %)
[2025-12-17 14:47:37] 2025-12-17 05:46:32,009 | INFO     | left removable region: 20
[2025-12-17 14:47:37] 2025-12-17 05:46:32,009 | INFO     | sum of square deviations: 665608335.9689934
[2025-12-17 14:47:37] 2025-12-17 05:46:32,009 | INFO     | sum of deviations: 343283947.596899
[2025-12-17 14:47:37] 2025-12-17 05:46:32,009 | INFO     | mean x: 1765945800.015504
[2025-12-17 14:47:37] 2025-12-17 05:46:32,009 | INFO     | mean y: 2345113.201550388
[2025-12-17 14:47:37] 2025-12-17 05:46:32,009 | INFO     | intersect: -908432010.0881529
[2025-12-17 14:47:37] 2025-12-17 05:46:32,009 | INFO     | chi2: 0.0007374270837187093
[2025-12-17 14:47:37] 2025-12-17 05:46:32,009 | INFO     | current memory leak: 0.52 B/s (using 129 data points, chi2=0.00)
[2025-12-17 14:47:37] 2025-12-17 05:46:32,010 | INFO     | could have reported an average CPU frequency of 3611 MHz (9 samples)
[2025-12-17 14:47:37] 2025-12-17 05:46:32,010 | INFO     | ..............................
[2025-12-17 14:47:37] 2025-12-17 05:46:32,010 | INFO     | . Timing measurements:
[2025-12-17 14:47:37] 2025-12-17 05:46:32,010 | INFO     | . get job = 0 s
[2025-12-17 14:47:37] 2025-12-17 05:46:32,010 | INFO     | . initial setup = 5 s
[2025-12-17 14:47:37] 2025-12-17 05:46:32,010 | INFO     | . payload setup = 3 s
[2025-12-17 14:47:37] 2025-12-17 05:46:32,010 | INFO     | . stage-in = 0 s
[2025-12-17 14:47:37] 2025-12-17 05:46:32,010 | INFO     | . payload execution = 9709 s
[2025-12-17 14:47:37] 2025-12-17 05:46:32,010 | INFO     | . stage-out = 0 s
[2025-12-17 14:47:37] 2025-12-17 05:46:32,010 | INFO     | . log creation = 0 s
[2025-12-17 14:47:37] 2025-12-17 05:46:32,010 | INFO     | ..............................
[2025-12-17 14:47:37] 2025-12-17 05:46:32,047 | INFO     | 
[2025-12-17 14:47:37] 2025-12-17 05:46:32,047 | INFO     | job summary report
[2025-12-17 14:47:37] 2025-12-17 05:46:32,047 | INFO     | --------------------------------------------------
[2025-12-17 14:47:37] 2025-12-17 05:46:32,048 | INFO     | PanDA job id: 6930759674
[2025-12-17 14:47:37] 2025-12-17 05:46:32,048 | INFO     | task id: 47898782
[2025-12-17 14:47:37] 2025-12-17 05:46:32,048 | INFO     | errors: (none)
[2025-12-17 14:47:37] 2025-12-17 05:46:32,048 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 14:47:37] 2025-12-17 05:46:32,048 | INFO     | pilot state: finished 
[2025-12-17 14:47:37] 2025-12-17 05:46:32,048 | INFO     | transexitcode: 0
[2025-12-17 14:47:37] 2025-12-17 05:46:32,048 | INFO     | exeerrorcode: 0
[2025-12-17 14:47:37] 2025-12-17 05:46:32,048 | INFO     | exeerrordiag: 
[2025-12-17 14:47:37] 2025-12-17 05:46:32,048 | INFO     | exitcode: 0
[2025-12-17 14:47:37] 2025-12-17 05:46:32,048 | INFO     | exitmsg: OK
[2025-12-17 14:47:37] 2025-12-17 05:46:32,048 | INFO     | cpuconsumptiontime: 26161 s
[2025-12-17 14:47:37] 2025-12-17 05:46:32,048 | INFO     | nevents: 400
[2025-12-17 14:47:37] 2025-12-17 05:46:32,048 | INFO     | neventsw: 0
[2025-12-17 14:47:37] 2025-12-17 05:46:32,048 | INFO     | pid: 994239
[2025-12-17 14:47:37] 2025-12-17 05:46:32,048 | INFO     | pgrp: 994239
[2025-12-17 14:47:37] 2025-12-17 05:46:32,048 | INFO     | corecount: 3
[2025-12-17 14:47:37] 2025-12-17 05:46:32,048 | INFO     | event service: False
[2025-12-17 14:47:37] 2025-12-17 05:46:32,048 | INFO     | sizes: {0: 2283981, 3: 2284243, 11: 2284271, 9717: 2312782, 9718: 2321836, 9724: 2322038}
[2025-12-17 14:47:37] 2025-12-17 05:46:32,048 | INFO     | --------------------------------------------------
[2025-12-17 14:47:37] 2025-12-17 05:46:32,048 | INFO     | 
[2025-12-17 14:47:37] 2025-12-17 05:46:32,048 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-12-17 14:47:37] 2025-12-17 05:46:32,058 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 14:47:37] 2025-12-17 05:46:32,059 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 14:47:37] 2025-12-17 05:46:32,059 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 14:47:37] 2025-12-17 05:46:32,059 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 14:47:37] 2025-12-17 05:46:32,059 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 14:47:37] 2025-12-17 05:46:32,059 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 14:47:37] 2025-12-17 05:46:32,059 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 14:47:37] 2025-12-17 05:46:32,059 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 14:47:37] 2025-12-17 05:46:32,059 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 14:47:37] 2025-12-17 05:46:32,059 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 14:47:37] 2025-12-17 05:46:32,059 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 14:47:37] 2025-12-17 05:46:32,059 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 14:47:37] 2025-12-17 05:46:32,059 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 14:47:37] 2025-12-17 05:46:32,059 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 14:47:37] 2025-12-17 05:46:32,059 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 14:47:37] 2025-12-17 05:46:32,059 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 14:47:37] 2025-12-17 05:46:32,059 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 14:47:37] 2025-12-17 05:46:32,059 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 14:47:37] 2025-12-17 05:46:32,059 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 14:47:37] 2025-12-17 05:46:32,059 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 14:47:37] 2025-12-17 05:46:32,060 | INFO     | job 6930759674 has completed (purged errors)
[2025-12-17 14:47:37] 2025-12-17 05:46:32,060 | INFO     | overall cleanup function is called
[2025-12-17 14:47:37] 2025-12-17 05:46:33,066 | INFO     | --- collectZombieJob: --- 10, [994239]
[2025-12-17 14:47:37] 2025-12-17 05:46:33,066 | INFO     | zombie collector waiting for pid 994239
[2025-12-17 14:47:37] 2025-12-17 05:46:33,066 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 14:47:37] 2025-12-17 05:46:33,066 | INFO     | collected zombie processes
[2025-12-17 14:47:37] 2025-12-17 05:46:33,066 | INFO     | will attempt to kill all subprocesses of pid=994239
[2025-12-17 14:47:37] 2025-12-17 05:46:33,098 | INFO     | process IDs to be killed: [994239] (in reverse order)
[2025-12-17 14:47:37] 2025-12-17 05:46:33,117 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 14:47:37] 2025-12-17 05:46:33,117 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 14:47:37] 2025-12-17 05:46:33,118 | INFO     | did not find any defunct processes belonging to 994239
[2025-12-17 14:47:37] 2025-12-17 05:46:33,119 | INFO     | did not find any defunct processes belonging to 994239
[2025-12-17 14:47:37] 2025-12-17 05:46:33,119 | INFO     | ready for new job
[2025-12-17 14:47:37] 2025-12-17 05:46:33,119 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 14:47:37] 2025-12-17 05:46:33,120 | INFO     | ***************************************
[2025-12-17 14:47:37] 2025-12-17 05:46:33,120 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 14:47:37] 2025-12-17 05:46:33,120 | INFO     | ***************************************
[2025-12-17 14:47:37] 2025-12-17 05:46:33,120 | INFO     | 
[2025-12-17 14:47:37] 2025-12-17 05:46:33,121 | INFO     | architecture information:
[2025-12-17 14:47:37] 2025-12-17 05:46:33,121 | INFO     | executing command: cat /etc/os-release
[2025-12-17 14:47:37] 2025-12-17 05:46:33,128 | INFO     | cat /etc/os-release:
[2025-12-17 14:47:37] NAME="CentOS Linux"
[2025-12-17 14:47:37] VERSION="7 (Core)"
[2025-12-17 14:47:37] ID="centos"
[2025-12-17 14:47:37] ID_LIKE="rhel fedora"
[2025-12-17 14:47:37] VERSION_ID="7"
[2025-12-17 14:47:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 14:47:37] ANSI_COLOR="0;31"
[2025-12-17 14:47:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 14:47:37] HOME_URL="https://www.centos.org/"
[2025-12-17 14:47:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 14:47:37] 
[2025-12-17 14:47:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 14:47:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 14:47:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 14:47:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 14:47:37] 
[2025-12-17 14:47:37] 2025-12-17 05:46:33,128 | INFO     | ***************************************
[2025-12-17 14:47:37] 2025-12-17 05:46:33,630 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-12-17 14:47:37] 2025-12-17 05:46:33,638 | INFO     | sufficient remaining disk space (114953289728 B)
[2025-12-17 14:47:37] 2025-12-17 05:46:33,638 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 14:47:37] 2025-12-17 05:46:33,638 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 14:47:37] 2025-12-17 05:46:33,638 | INFO     | update_server=False
[2025-12-17 14:47:37] 2025-12-17 05:46:33,638 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 14:47:37] 2025-12-17 05:46:33,639 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 14:47:37] 2025-12-17 05:46:33,639 | INFO     | aborting loop
[2025-12-17 14:47:37] 2025-12-17 05:46:33,639 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 14:47:37] 2025-12-17 05:46:34,049 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 14:47:37] 2025-12-17 05:46:34,614 | INFO     | all data control threads have been joined
[2025-12-17 14:47:37] 2025-12-17 05:46:34,643 | INFO     | [job] retrieve thread has finished
[2025-12-17 14:47:37] 2025-12-17 05:46:34,644 | INFO     | [job] job monitor thread has finished
[2025-12-17 14:47:37] 2025-12-17 05:46:34,644 | INFO     | [job] validate thread has finished
[2025-12-17 14:47:37] 2025-12-17 05:46:34,644 | INFO     | [job] queue monitor thread has finished
[2025-12-17 14:47:37] 2025-12-17 05:46:34,668 | INFO     | all payload control threads have been joined
[2025-12-17 14:47:37] 2025-12-17 05:46:34,709 | INFO     | all job control threads have been joined
[2025-12-17 14:47:37] 2025-12-17 05:46:35,364 | INFO     | [payload] failed_post thread has finished
[2025-12-17 14:47:37] 2025-12-17 05:46:35,364 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 14:47:37] 2025-12-17 05:46:35,591 | INFO     | [payload] validate_post thread has finished
[2025-12-17 14:47:37] 2025-12-17 05:46:35,591 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 14:47:37] 2025-12-17 05:46:35,615 | INFO     | [data] copytool_in thread has finished
[2025-12-17 14:47:37] 2025-12-17 05:46:35,619 | INFO     | [data] control thread has finished
[2025-12-17 14:47:37] 2025-12-17 05:46:35,674 | INFO     | [payload] control thread has finished
[2025-12-17 14:47:37] 2025-12-17 05:46:35,714 | INFO     | [job] control thread has finished
[2025-12-17 14:47:37] 2025-12-17 05:46:35,966 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 14:47:37] 2025-12-17 05:46:35,987 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 14:47:37] 2025-12-17 05:46:36,054 | INFO     | [data] copytool_out thread has finished
[2025-12-17 14:47:37] 2025-12-17 05:46:36,582 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 14:47:37] 2025-12-17 05:46:40,588 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 14:47:37] 2025-12-17 05:47:03,387 | INFO     | PID=987694 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-17 14:47:37] 2025-12-17 05:47:03,387 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 14:47:37] 2025-12-17 05:47:03,387 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 14:47:37] 2025-12-17 05:47:03,387 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 14:47:37] 2025-12-17 05:47:30,852 | INFO     | [monitor] cgroup control has ended
[2025-12-17 14:47:37] 2025-12-17 05:47:31,966 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140024118626112)>', '<ExcThread(monitor, started 140023752013568)>']
[2025-12-17 14:47:37] 2025-12-17 05:47:32,532 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 14:47:37] 2025-12-17 05:47:32,532 | INFO     | [monitor] control thread has ended
[2025-12-17 14:47:37] 2025-12-17 05:47:36,991 | INFO     | all workflow threads have been joined
[2025-12-17 14:47:37] 2025-12-17 05:47:36,991 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 14:47:37] 2025-12-17 05:47:36,991 | INFO     | traces error code: 0
[2025-12-17 14:47:37] 2025-12-17 05:47:36,992 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 14:47:37] 2025-12-17 05:47:37,055 [wrapper] ==== pilot stdout END ====
[2025-12-17 14:47:37] 2025-12-17 05:47:37,057 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 14:47:37] 2025-12-17 05:47:37,058 [wrapper] pilotpid: 987694
[2025-12-17 14:47:37] 2025-12-17 05:47:37,060 [wrapper] Pilot exit status: 0
[2025-12-17 14:47:37] 2025-12-17 05:47:37,065 [wrapper] pandaids: 6930759674
[2025-12-17 14:47:37] 2025-12-17 05:47:37,077 [wrapper] cleanup supervisor_pilot 1010957 987695
[2025-12-17 14:47:37] 2025-12-17 05:47:37,079 [wrapper] Test setup, not cleaning
[2025-12-17 14:47:37] 2025-12-17 05:47:37,080 [wrapper] apfmon messages muted
[2025-12-17 14:47:37] 2025-12-17 05:47:37,082 [wrapper] ==== wrapper stdout END ====
[2025-12-17 14:47:37] 2025-12-17 05:47:37,083 [wrapper] ==== wrapper stderr END ====
[2025-12-17 14:47:37]  *** Error codes and diagnostics ***
[2025-12-17 14:47:37]     "exeErrorCode": 0,
[2025-12-17 14:47:37]     "exeErrorDiag": "",
[2025-12-17 14:47:37]     "pilotErrorCode": 0,
[2025-12-17 14:47:37]     "pilotErrorDiag": "",
[2025-12-17 14:47:37]  *** Listing of results directory ***
[2025-12-17 14:47:37] total 407948
[2025-12-17 14:47:37] -rw-r--r--. 1 boinc boinc    579449 Dec 16 15:04 pilot3.tar.gz
[2025-12-17 14:47:37] -rwx------. 1 boinc boinc     36322 Dec 16 15:07 runpilot2-wrapper.sh
[2025-12-17 14:47:37] -rw-r--r--. 1 boinc boinc      5112 Dec 16 15:09 queuedata.json
[2025-12-17 14:47:37] -rw-r--r--. 1 boinc boinc       100 Dec 17 12:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 14:47:37] -rwxr-xr-x. 1 boinc boinc      7986 Dec 17 12:04 run_atlas
[2025-12-17 14:47:37] -rw-r--r--. 1 boinc boinc       105 Dec 17 12:04 job.xml
[2025-12-17 14:47:37] -rw-r--r--. 2 boinc boinc     15847 Dec 17 12:04 start_atlas.sh
[2025-12-17 14:47:37] drwxrwx--x. 2 boinc boinc        68 Dec 17 12:04 shared
[2025-12-17 14:47:37] -rw-r--r--. 2 boinc boinc    592398 Dec 17 12:04 input.tar.gz
[2025-12-17 14:47:37] -rw-r--r--. 1 boinc boinc      9312 Dec 17 12:04 init_data.xml
[2025-12-17 14:47:37] -rw-r--r--. 2 boinc boinc 213609854 Dec 17 12:04 EVNT.47898779._000187.pool.root.1
[2025-12-17 14:47:37] -rw-r--r--. 1 boinc boinc         0 Dec 17 12:04 boinc_lockfile
[2025-12-17 14:47:37] -rw-r--r--. 1 boinc boinc      2523 Dec 17 12:04 pandaJob.out
[2025-12-17 14:47:37] -rw-------. 1 boinc boinc    987409 Dec 17 12:04 agis_schedconf.cvmfs.json
[2025-12-17 14:47:37] -rw-------. 1 boinc boinc   1516240 Dec 17 12:04 agis_ddmendpoints.agis.ALL.json
[2025-12-17 14:47:37] drwx------. 5 boinc boinc      4096 Dec 17 12:04 pilot3
[2025-12-17 14:47:37] -rw-------. 1 boinc boinc 196927138 Dec 17 14:46 HITS.47898782._004586.pool.root.1
[2025-12-17 14:47:37] -rw-r--r--. 1 boinc boinc       529 Dec 17 14:46 boinc_task_state.xml
[2025-12-17 14:47:37] -rw-------. 1 boinc boinc      1013 Dec 17 14:46 memory_monitor_summary.json
[2025-12-17 14:47:37] -rw-------. 1 boinc boinc    308098 Dec 17 14:46 log.47898782._004586.job.log.tgz.1
[2025-12-17 14:47:37] -rw-------. 1 boinc boinc        95 Dec 17 14:46 pilot_heartbeat.json
[2025-12-17 14:47:37] -rw-------. 1 boinc boinc      7755 Dec 17 14:46 heartbeat.json
[2025-12-17 14:47:37] -rw-r--r--. 1 boinc boinc      8192 Dec 17 14:47 boinc_mmap_file
[2025-12-17 14:47:37] -rw-r--r--. 1 boinc boinc        27 Dec 17 14:47 wrapper_checkpoint.txt
[2025-12-17 14:47:37] -rw-------. 1 boinc boinc      4748 Dec 17 14:47 pilotlog.txt
[2025-12-17 14:47:37] -rw-------. 1 boinc boinc   1343377 Dec 17 14:47 log.47898782._004586.job.log.1
[2025-12-17 14:47:37] -rw-------. 1 boinc boinc       357 Dec 17 14:47 output.list
[2025-12-17 14:47:37] -rw-r--r--. 1 boinc boinc       620 Dec 17 14:47 runtime_log
[2025-12-17 14:47:37] -rw-------. 1 boinc boinc   1669120 Dec 17 14:47 result.tar.gz
[2025-12-17 14:47:37] -rw-r--r--. 1 boinc boinc      8775 Dec 17 14:47 runtime_log.err
[2025-12-17 14:47:37] -rw-------. 1 boinc boinc       643 Dec 17 14:47 PxIMDmeOdp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmbdZKDmQxo2Nn.diag
[2025-12-17 14:47:37] -rw-r--r--. 1 boinc boinc     20843 Dec 17 14:47 stderr.txt
[2025-12-17 14:47:37] HITS file was successfully produced:
[2025-12-17 14:47:37] -rw-------. 1 boinc boinc 196927138 Dec 17 14:46 shared/HITS.pool.root.1
[2025-12-17 14:47:37]  *** Contents of shared directory: ***
[2025-12-17 14:47:37] total 403144
[2025-12-17 14:47:37] -rw-r--r--. 2 boinc boinc     15847 Dec 17 12:04 start_atlas.sh
[2025-12-17 14:47:37] -rw-r--r--. 2 boinc boinc    592398 Dec 17 12:04 input.tar.gz
[2025-12-17 14:47:37] -rw-r--r--. 2 boinc boinc 213609854 Dec 17 12:04 ATLAS.root_0
[2025-12-17 14:47:37] -rw-------. 1 boinc boinc 196927138 Dec 17 14:46 HITS.pool.root.1
[2025-12-17 14:47:37] -rw-------. 1 boinc boinc   1669120 Dec 17 14:47 result.tar.gz
14:47:38 (984023): run_atlas exited; CPU time 26196.897749
14:47:38 (984023): called boinc_finish(0)

</stderr_txt>
]]>

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