Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:55:07 (13003): wrapper (7.7.26015): starting
18:55:07 (13003): wrapper: running run_atlas (--nthreads 12)
[2025-12-16 18:55:07] Arguments: --nthreads 12
[2025-12-16 18:55:07] Threads: 12
[2025-12-16 18:55:07] Checking for CVMFS
[2025-12-16 18:55:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 18:55:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 18:55:08] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 18:55:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 18:55:08] 2.11.2.0 2998 132881 103480 154092 0 59 13325829 20275201 1 130560 0 57002172 99.957 5861937 35530 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-16 18:55:08] CVMFS is ok
[2025-12-16 18:55:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 18:55:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 18:55:08] Further information can be found at the LHC@home message board.
[2025-12-16 18:55:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 18:55:08] Checking for apptainer binary...
[2025-12-16 18:55:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 18:55:08] Running /usr/bin/apptainer --version
[2025-12-16 18:55:08] apptainer version 1.3.2-1.el7
[2025-12-16 18:55:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 18:55:09] c-205-12.aglt2.org
[2025-12-16 18:55:09] apptainer works
[2025-12-16 18:55:09] Set ATHENA_PROC_NUMBER=12
[2025-12-16 18:55:09] Set ATHENA_CORE_NUMBER=12
[2025-12-16 18:55:09] Starting ATLAS job with PandaID=6931014353
[2025-12-16 18:55:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 20:15:38]  *** The last 200 lines of the pilot log: ***
[2025-12-16 20:15:38]  status_code=0
[2025-12-16 20:15:38]  storage_token=
[2025-12-16 20:15:38]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6931014353/log.47886831._013900.job.log.tgz.1
[2025-12-16 20:15:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6f/14/log.47886831._013900.job.log.tgz.1
[2025-12-16 20:15:38]  workdir=None
[2025-12-16 20:15:38] ]
[2025-12-16 20:15:38] 2025-12-17 01:14:50,532 | INFO     | transferring file log.47886831._013900.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6931014353/log.47886831._013900.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-16 20:15:38] 2025-12-17 01:14:50,532 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6931014353/log.47886831._013900.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886831._013900.job
[2025-12-16 20:15:38] 2025-12-17 01:14:50,555 | INFO     | adding to output.list: log.47886831._013900.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6f/14/log.47886831._013900.job.log.tg
[2025-12-16 20:15:38] 2025-12-17 01:14:50,556 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-16 20:15:38] 2025-12-17 01:14:50,556 | INFO     | summary of transferred files:
[2025-12-16 20:15:38] 2025-12-17 01:14:50,556 | INFO     |  -- lfn=log.47886831._013900.job.log.tgz.1, status_code=0, status=transferred
[2025-12-16 20:15:38] 2025-12-17 01:14:50,557 | INFO     | stage-out finished correctly
[2025-12-16 20:15:38] 2025-12-17 01:14:50,637 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-16 20:15:38] 2025-12-17 01:14:51,748 | INFO     | time since job start (4765s) is within the limit (174528.0s)
[2025-12-16 20:15:38] 2025-12-17 01:14:53,364 | INFO     | job 6931014353 has state=finished
[2025-12-16 20:15:38] 2025-12-17 01:14:53,364 | INFO     | preparing for final server update for job 6931014353 in state='finished'
[2025-12-16 20:15:38] 2025-12-17 01:14:53,365 | INFO     | this job has now completed (state=finished)
[2025-12-16 20:15:38] 2025-12-17 01:14:53,365 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-16 20:15:38] 2025-12-17 01:14:53,365 | INFO     | log transfer has been attempted: DONE
[2025-12-16 20:15:38] 2025-12-17 01:14:53,365 | INFO     | job 6931014353 has finished - writing final server update
[2025-12-16 20:15:38] 2025-12-17 01:14:53,366 | INFO     | total number of processed events: 400 (read)
[2025-12-16 20:15:38] 2025-12-17 01:14:53,366 | INFO     | executing command: lscpu
[2025-12-16 20:15:38] 2025-12-17 01:14:53,394 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-16 20:15:38] 2025-12-17 01:14:53,754 | INFO     | time since job start (4767s) is within the limit (174528.0s)
[2025-12-16 20:15:38] 2025-12-17 01:14:53,916 | WARNING  | process 23367 can no longer be monitored (due to stat problems) - aborting
[2025-12-16 20:15:38] 2025-12-17 01:14:53,916 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6931014353/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 20:15:38] 2025-12-17 01:14:54,003 | INFO     | number of running child processes to parent process 23367: 1
[2025-12-16 20:15:38] 2025-12-17 01:14:54,003 | INFO     | maximum number of monitored processes: 6
[2025-12-16 20:15:38] 2025-12-17 01:14:55,760 | INFO     | time since job start (4769s) is within the limit (174528.0s)
[2025-12-16 20:15:38] 2025-12-17 01:14:56,506 | INFO     | monitor loop #357: job 0:6931014353 is in state 'finished'
[2025-12-16 20:15:38] 2025-12-17 01:14:56,506 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 20:15:38] 2025-12-17 01:14:57,765 | INFO     | time since job start (4771s) is within the limit (174528.0s)
[2025-12-16 20:15:38] 2025-12-17 01:14:58,885 | INFO     | PID=16978 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 20:15:38] 2025-12-17 01:14:59,009 | INFO     | monitor loop #358: job 0:6931014353 is in state 'finished'
[2025-12-16 20:15:38] 2025-12-17 01:14:59,009 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 20:15:38] 2025-12-17 01:14:59,199 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-16 20:15:38] 2025-12-17 01:14:59,202 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.6666666666667
[2025-12-16 20:15:38] 2025-12-17 01:14:59,204 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6931014353/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 20:15:38] 2025-12-17 01:14:59,204 | INFO     | extracted standard info from prmon json
[2025-12-16 20:15:38] 2025-12-17 01:14:59,204 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 20:15:38] 2025-12-17 01:14:59,204 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 20:15:38] 2025-12-17 01:14:59,205 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 20:15:38] 2025-12-17 01:14:59,205 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 20:15:38] 2025-12-17 01:14:59,206 | INFO     | fitting pss+swap vs Time
[2025-12-16 20:15:38] 2025-12-17 01:14:59,207 | INFO     | sum of square deviations: 110960220.0
[2025-12-16 20:15:38] 2025-12-17 01:14:59,207 | INFO     | sum of deviations: -2989176412.000001
[2025-12-16 20:15:38] 2025-12-17 01:14:59,207 | INFO     | mean x: 1765931795.0
[2025-12-16 20:15:38] 2025-12-17 01:14:59,207 | INFO     | mean y: 2716405.647887324
[2025-12-16 20:15:38] 2025-12-17 01:14:59,207 | INFO     | intersect: 47575456138.99396
[2025-12-16 20:15:38] 2025-12-17 01:14:59,207 | INFO     | chi2: 0.10325191332482403
[2025-12-16 20:15:38] 2025-12-17 01:14:59,208 | INFO     | current memory leak: -26.94 B/s (using 71 data points, chi2=0.10)
[2025-12-16 20:15:38] 2025-12-17 01:14:59,208 | INFO     | could have reported an average CPU frequency of 2023 MHz (6 samples)
[2025-12-16 20:15:38] 2025-12-17 01:14:59,208 | INFO     | ..............................
[2025-12-16 20:15:38] 2025-12-17 01:14:59,208 | INFO     | . Timing measurements:
[2025-12-16 20:15:38] 2025-12-17 01:14:59,208 | INFO     | . get job = 0 s
[2025-12-16 20:15:38] 2025-12-17 01:14:59,208 | INFO     | . initial setup = 2 s
[2025-12-16 20:15:38] 2025-12-17 01:14:59,208 | INFO     | . payload setup = 7 s
[2025-12-16 20:15:38] 2025-12-17 01:14:59,209 | INFO     | . stage-in = 0 s
[2025-12-16 20:15:38] 2025-12-17 01:14:59,209 | INFO     | . payload execution = 4735 s
[2025-12-16 20:15:38] 2025-12-17 01:14:59,209 | INFO     | . stage-out = 0 s
[2025-12-16 20:15:38] 2025-12-17 01:14:59,209 | INFO     | . log creation = 0 s
[2025-12-16 20:15:38] 2025-12-17 01:14:59,209 | INFO     | ..............................
[2025-12-16 20:15:38] 2025-12-17 01:14:59,288 | INFO     | 
[2025-12-16 20:15:38] 2025-12-17 01:14:59,288 | INFO     | job summary report
[2025-12-16 20:15:38] 2025-12-17 01:14:59,288 | INFO     | --------------------------------------------------
[2025-12-16 20:15:38] 2025-12-17 01:14:59,289 | INFO     | PanDA job id: 6931014353
[2025-12-16 20:15:38] 2025-12-17 01:14:59,289 | INFO     | task id: 47886831
[2025-12-16 20:15:38] 2025-12-17 01:14:59,289 | INFO     | errors: (none)
[2025-12-16 20:15:38] 2025-12-17 01:14:59,289 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 20:15:38] 2025-12-17 01:14:59,289 | INFO     | pilot state: finished 
[2025-12-16 20:15:38] 2025-12-17 01:14:59,289 | INFO     | transexitcode: 0
[2025-12-16 20:15:38] 2025-12-17 01:14:59,290 | INFO     | exeerrorcode: 0
[2025-12-16 20:15:38] 2025-12-17 01:14:59,290 | INFO     | exeerrordiag: 
[2025-12-16 20:15:38] 2025-12-17 01:14:59,290 | INFO     | exitcode: 0
[2025-12-16 20:15:38] 2025-12-17 01:14:59,290 | INFO     | exitmsg: OK
[2025-12-16 20:15:38] 2025-12-17 01:14:59,290 | INFO     | cpuconsumptiontime: 49492 s
[2025-12-16 20:15:38] 2025-12-17 01:14:59,290 | INFO     | nevents: 400
[2025-12-16 20:15:38] 2025-12-17 01:14:59,291 | INFO     | neventsw: 0
[2025-12-16 20:15:38] 2025-12-17 01:14:59,291 | INFO     | pid: 23367
[2025-12-16 20:15:38] 2025-12-17 01:14:59,291 | INFO     | pgrp: 23367
[2025-12-16 20:15:38] 2025-12-17 01:14:59,291 | INFO     | corecount: 12
[2025-12-16 20:15:38] 2025-12-17 01:14:59,291 | INFO     | event service: False
[2025-12-16 20:15:38] 2025-12-17 01:14:59,291 | INFO     | sizes: {0: 2283993, 5: 2284255, 11: 2284311, 4746: 2310492, 4748: 2319546, 4756: 2319684}
[2025-12-16 20:15:38] 2025-12-17 01:14:59,291 | INFO     | --------------------------------------------------
[2025-12-16 20:15:38] 2025-12-17 01:14:59,292 | INFO     | 
[2025-12-16 20:15:38] 2025-12-17 01:14:59,292 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-16 20:15:38] 2025-12-17 01:14:59,314 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 20:15:38] 2025-12-17 01:14:59,315 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 20:15:38] 2025-12-17 01:14:59,315 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 20:15:38] 2025-12-17 01:14:59,315 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 20:15:38] 2025-12-17 01:14:59,315 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 20:15:38] 2025-12-17 01:14:59,315 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 20:15:38] 2025-12-17 01:14:59,316 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 20:15:38] 2025-12-17 01:14:59,316 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 20:15:38] 2025-12-17 01:14:59,316 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 20:15:38] 2025-12-17 01:14:59,316 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 20:15:38] 2025-12-17 01:14:59,316 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 20:15:38] 2025-12-17 01:14:59,316 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 20:15:38] 2025-12-17 01:14:59,317 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 20:15:38] 2025-12-17 01:14:59,317 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 20:15:38] 2025-12-17 01:14:59,317 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 20:15:38] 2025-12-17 01:14:59,317 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 20:15:38] 2025-12-17 01:14:59,317 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 20:15:38] 2025-12-17 01:14:59,317 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 20:15:38] 2025-12-17 01:14:59,318 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 20:15:38] 2025-12-17 01:14:59,318 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 20:15:38] 2025-12-17 01:14:59,318 | INFO     | job 6931014353 has completed (purged errors)
[2025-12-16 20:15:38] 2025-12-17 01:14:59,318 | INFO     | overall cleanup function is called
[2025-12-16 20:15:38] 2025-12-17 01:15:00,326 | INFO     | --- collectZombieJob: --- 10, [23367]
[2025-12-16 20:15:38] 2025-12-17 01:15:00,326 | INFO     | zombie collector waiting for pid 23367
[2025-12-16 20:15:38] 2025-12-17 01:15:00,333 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 20:15:38] 2025-12-17 01:15:00,333 | INFO     | collected zombie processes
[2025-12-16 20:15:38] 2025-12-17 01:15:00,334 | INFO     | will attempt to kill all subprocesses of pid=23367
[2025-12-16 20:15:38] 2025-12-17 01:15:00,422 | INFO     | process IDs to be killed: [23367] (in reverse order)
[2025-12-16 20:15:38] 2025-12-17 01:15:00,476 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 20:15:38] 2025-12-17 01:15:00,476 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 20:15:38] 2025-12-17 01:15:00,480 | INFO     | did not find any defunct processes belonging to 23367
[2025-12-16 20:15:38] 2025-12-17 01:15:00,482 | INFO     | did not find any defunct processes belonging to 23367
[2025-12-16 20:15:38] 2025-12-17 01:15:00,482 | INFO     | ready for new job
[2025-12-16 20:15:38] 2025-12-17 01:15:00,482 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 20:15:38] 2025-12-17 01:15:00,483 | INFO     | ***************************************
[2025-12-16 20:15:38] 2025-12-17 01:15:00,483 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 20:15:38] 2025-12-17 01:15:00,484 | INFO     | ***************************************
[2025-12-16 20:15:38] 2025-12-17 01:15:00,484 | INFO     | 
[2025-12-16 20:15:38] 2025-12-17 01:15:00,484 | INFO     | architecture information:
[2025-12-16 20:15:38] 2025-12-17 01:15:00,485 | INFO     | executing command: cat /etc/os-release
[2025-12-16 20:15:38] 2025-12-17 01:15:00,499 | INFO     | cat /etc/os-release:
[2025-12-16 20:15:38] NAME="CentOS Linux"
[2025-12-16 20:15:38] VERSION="7 (Core)"
[2025-12-16 20:15:38] ID="centos"
[2025-12-16 20:15:38] ID_LIKE="rhel fedora"
[2025-12-16 20:15:38] VERSION_ID="7"
[2025-12-16 20:15:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 20:15:38] ANSI_COLOR="0;31"
[2025-12-16 20:15:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 20:15:38] HOME_URL="https://www.centos.org/"
[2025-12-16 20:15:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 20:15:38] 
[2025-12-16 20:15:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 20:15:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 20:15:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 20:15:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 20:15:38] 
[2025-12-16 20:15:38] 2025-12-17 01:15:00,500 | INFO     | ***************************************
[2025-12-16 20:15:38] 2025-12-17 01:15:01,003 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-16 20:15:38] 2025-12-17 01:15:01,019 | INFO     | sufficient remaining disk space (29449256960 B)
[2025-12-16 20:15:38] 2025-12-17 01:15:01,019 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 20:15:38] 2025-12-17 01:15:01,020 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 20:15:38] 2025-12-17 01:15:01,020 | INFO     | update_server=False
[2025-12-16 20:15:38] 2025-12-17 01:15:01,020 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 20:15:38] 2025-12-17 01:15:01,020 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 20:15:38] 2025-12-17 01:15:01,150 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 20:15:38] 2025-12-17 01:15:01,222 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 20:15:38] 2025-12-17 01:15:01,278 | INFO     | all data control threads have been joined
[2025-12-16 20:15:38] 2025-12-17 01:15:01,357 | INFO     | all payload control threads have been joined
[2025-12-16 20:15:38] 2025-12-17 01:15:01,512 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-16 20:15:38] 2025-12-17 01:15:01,512 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-16 20:15:38] 2025-12-17 01:15:01,512 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 20:15:38] 2025-12-17 01:15:01,513 | INFO     | will abort loop
[2025-12-16 20:15:38] 2025-12-17 01:15:02,025 | INFO     | [job] retrieve thread has finished
[2025-12-16 20:15:38] 2025-12-17 01:15:02,025 | INFO     | [job] queue monitor thread has finished
[2025-12-16 20:15:38] 2025-12-17 01:15:02,284 | INFO     | [data] control thread has finished
[2025-12-16 20:15:38] 2025-12-17 01:15:02,363 | INFO     | [payload] control thread has finished
[2025-12-16 20:15:38] 2025-12-17 01:15:02,439 | INFO     | all job control threads have been joined
[2025-12-16 20:15:38] 2025-12-17 01:15:02,518 | INFO     | [job] job monitor thread has finished
[2025-12-16 20:15:38] 2025-12-17 01:15:02,564 | INFO     | [data] copytool_in thread has finished
[2025-12-16 20:15:38] 2025-12-17 01:15:02,871 | INFO     | [payload] validate_post thread has finished
[2025-12-16 20:15:38] 2025-12-17 01:15:03,064 | INFO     | [job] validate thread has finished
[2025-12-16 20:15:38] 2025-12-17 01:15:03,091 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 20:15:38] 2025-12-17 01:15:03,156 | INFO     | [data] copytool_out thread has finished
[2025-12-16 20:15:38] 2025-12-17 01:15:03,410 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 20:15:38] 2025-12-17 01:15:03,413 | INFO     | [payload] failed_post thread has finished
[2025-12-16 20:15:38] 2025-12-17 01:15:03,444 | INFO     | [job] control thread has finished
[2025-12-16 20:15:38] 2025-12-17 01:15:03,487 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 20:15:38] 2025-12-17 01:15:05,228 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 20:15:38] 2025-12-17 01:15:11,744 | INFO     | job.realtimelogging is not enabled
[2025-12-16 20:15:38] 2025-12-17 01:15:12,749 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 20:15:38] 2025-12-17 01:15:31,085 | INFO     | PID=16978 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 20:15:38] 2025-12-17 01:15:31,086 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 20:15:38] 2025-12-17 01:15:31,086 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 20:15:38] 2025-12-17 01:15:31,086 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 20:15:38] 2025-12-17 01:15:33,215 | INFO     | [monitor] cgroup control has ended
[2025-12-16 20:15:38] 2025-12-17 01:15:33,560 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139935918692160)>', '<ExcThread(monitor, started 139935252207360)>']
[2025-12-16 20:15:38] 2025-12-17 01:15:34,099 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 20:15:38] 2025-12-17 01:15:34,099 | INFO     | [monitor] control thread has ended
[2025-12-16 20:15:38] 2025-12-17 01:15:38,586 | INFO     | all workflow threads have been joined
[2025-12-16 20:15:38] 2025-12-17 01:15:38,586 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 20:15:38] 2025-12-17 01:15:38,588 | INFO     | traces error code: 0
[2025-12-16 20:15:38] 2025-12-17 01:15:38,589 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 20:15:38] 2025-12-17 01:15:38,688 [wrapper] ==== pilot stdout END ====
[2025-12-16 20:15:38] 2025-12-17 01:15:38,692 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 20:15:38] 2025-12-17 01:15:38,695 [wrapper] pilotpid: 16978
[2025-12-16 20:15:38] 2025-12-17 01:15:38,699 [wrapper] Pilot exit status: 0
[2025-12-16 20:15:38] 2025-12-17 01:15:38,715 [wrapper] pandaids: 6931014353
[2025-12-16 20:15:38] 2025-12-17 01:15:38,754 [wrapper] cleanup supervisor_pilot 19861 16979
[2025-12-16 20:15:38] 2025-12-17 01:15:38,757 [wrapper] Test setup, not cleaning
[2025-12-16 20:15:38] 2025-12-17 01:15:38,761 [wrapper] apfmon messages muted
[2025-12-16 20:15:38] 2025-12-17 01:15:38,765 [wrapper] ==== wrapper stdout END ====
[2025-12-16 20:15:38] 2025-12-17 01:15:38,769 [wrapper] ==== wrapper stderr END ====
[2025-12-16 20:15:38]  *** Error codes and diagnostics ***
[2025-12-16 20:15:38]     "exeErrorCode": 0,
[2025-12-16 20:15:38]     "exeErrorDiag": "",
[2025-12-16 20:15:38]     "pilotErrorCode": 0,
[2025-12-16 20:15:38]     "pilotErrorDiag": "",
[2025-12-16 20:15:38]  *** Listing of results directory ***
[2025-12-16 20:15:38] total 341404
[2025-12-16 20:15:38] -rwx------ 1 boincer umatlas     36322 Dec 16 07:10 runpilot2-wrapper.sh
[2025-12-16 20:15:38] -rw-r--r-- 1 boincer umatlas    579449 Dec 16 07:11 pilot3.tar.gz
[2025-12-16 20:15:38] -rw-r--r-- 1 boincer umatlas      5112 Dec 16 07:12 queuedata.json
[2025-12-16 20:15:38] -rw-r--r-- 1 boincer umatlas       100 Dec 16 18:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 20:15:38] -rwxr-xr-x 1 boincer umatlas      7986 Dec 16 18:55 run_atlas
[2025-12-16 20:15:38] -rw-r--r-- 1 boincer umatlas       105 Dec 16 18:55 job.xml
[2025-12-16 20:15:38] -rw-r--r-- 2 boincer umatlas 194748889 Dec 16 18:55 EVNT.47886829._000491.pool.root.1
[2025-12-16 20:15:38] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 18:55 start_atlas.sh
[2025-12-16 20:15:38] drwxrwx--x 2 boincer umatlas      4096 Dec 16 18:55 shared
[2025-12-16 20:15:38] -rw-r--r-- 2 boincer umatlas    592422 Dec 16 18:55 input.tar.gz
[2025-12-16 20:15:38] -rw-r--r-- 1 boincer umatlas         0 Dec 16 18:55 boinc_lockfile
[2025-12-16 20:15:38] -rw-r--r-- 1 boincer umatlas      2539 Dec 16 18:55 pandaJob.out
[2025-12-16 20:15:38] -rw------- 1 boincer umatlas        57 Dec 16 18:55 setup.sh.local
[2025-12-16 20:15:38] -rw------- 1 boincer umatlas    987401 Dec 16 18:55 agis_schedconf.cvmfs.json
[2025-12-16 20:15:38] -rw------- 1 boincer umatlas   1516240 Dec 16 18:55 agis_ddmendpoints.agis.ALL.json
[2025-12-16 20:15:38] drwx------ 5 boincer umatlas      4096 Dec 16 18:55 pilot3
[2025-12-16 20:15:38] -rw-r--r-- 1 boincer umatlas      5953 Dec 16 20:09 init_data.xml
[2025-12-16 20:15:38] -rw------- 1 boincer umatlas 148752178 Dec 16 20:14 HITS.47886831._013900.pool.root.1
[2025-12-16 20:15:38] -rw-r--r-- 1 boincer umatlas       529 Dec 16 20:14 boinc_task_state.xml
[2025-12-16 20:15:38] -rw------- 1 boincer umatlas      1045 Dec 16 20:14 memory_monitor_summary.json
[2025-12-16 20:15:38] -rw------- 1 boincer umatlas    398066 Dec 16 20:14 log.47886831._013900.job.log.tgz.1
[2025-12-16 20:15:38] -rw------- 1 boincer umatlas      7846 Dec 16 20:14 heartbeat.json
[2025-12-16 20:15:38] -rw-r--r-- 1 boincer umatlas        27 Dec 16 20:15 wrapper_checkpoint.txt
[2025-12-16 20:15:38] -rw-r--r-- 1 boincer umatlas      8192 Dec 16 20:15 boinc_mmap_file
[2025-12-16 20:15:38] -rw------- 1 boincer umatlas        95 Dec 16 20:15 pilot_heartbeat.json
[2025-12-16 20:15:38] -rw------- 1 boincer umatlas      5004 Dec 16 20:15 pilotlog.txt
[2025-12-16 20:15:38] -rw------- 1 boincer umatlas    691323 Dec 16 20:15 log.47886831._013900.job.log.1
[2025-12-16 20:15:38] -rw------- 1 boincer umatlas       357 Dec 16 20:15 output.list
[2025-12-16 20:15:38] -rw-r--r-- 1 boincer umatlas       620 Dec 16 20:15 runtime_log
[2025-12-16 20:15:38] -rw------- 1 boincer umatlas   1105920 Dec 16 20:15 result.tar.gz
[2025-12-16 20:15:38] -rw-r--r-- 1 boincer umatlas      9344 Dec 16 20:15 runtime_log.err
[2025-12-16 20:15:38] -rw------- 1 boincer umatlas       659 Dec 16 20:15 hYCMDmg3ip8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmq5ZKDmzHBHXn.diag
[2025-12-16 20:15:38] -rw-r--r-- 1 boincer umatlas     22219 Dec 16 20:15 stderr.txt
[2025-12-16 20:15:38] HITS file was successfully produced:
[2025-12-16 20:15:38] -rw------- 1 boincer umatlas 148752178 Dec 16 20:14 shared/HITS.pool.root.1
[2025-12-16 20:15:38]  *** Contents of shared directory: ***
[2025-12-16 20:15:38] total 337140
[2025-12-16 20:15:38] -rw-r--r-- 2 boincer umatlas 194748889 Dec 16 18:55 ATLAS.root_0
[2025-12-16 20:15:38] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 18:55 start_atlas.sh
[2025-12-16 20:15:38] -rw-r--r-- 2 boincer umatlas    592422 Dec 16 18:55 input.tar.gz
[2025-12-16 20:15:38] -rw------- 1 boincer umatlas 148752178 Dec 16 20:14 HITS.pool.root.1
[2025-12-16 20:15:38] -rw------- 1 boincer umatlas   1105920 Dec 16 20:15 result.tar.gz
20:15:40 (13003): run_atlas exited; CPU time 49462.807758
20:15:40 (13003): called boinc_finish(0)

</stderr_txt>
]]>

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