Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:43:59 (21957): wrapper (7.7.26015): starting
18:43:59 (21957): wrapper: running run_atlas (--nthreads 12)
[2025-12-16 18:43:59] Arguments: --nthreads 12
[2025-12-16 18:43:59] Threads: 12
[2025-12-16 18:43:59] Checking for CVMFS
[2025-12-16 18:43:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 18:43:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 18:43:59] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 18:43:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 18:43:59] 2.11.2.0 25590 217838 94424 154092 3 59 14619563 20275201 1 130560 2 111664502 99.963 9137591 27839 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-16 18:43:59] CVMFS is ok
[2025-12-16 18:43:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 18:43:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 18:43:59] Further information can be found at the LHC@home message board.
[2025-12-16 18:43:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 18:43:59] Checking for apptainer binary...
[2025-12-16 18:43:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 18:43:59] Running /usr/bin/apptainer --version
[2025-12-16 18:43:59] apptainer version 1.3.2-1.el7
[2025-12-16 18:43:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 18:44:01] c-205-24.aglt2.org
[2025-12-16 18:44:01] apptainer works
[2025-12-16 18:44:01] Set ATHENA_PROC_NUMBER=12
[2025-12-16 18:44:01] Set ATHENA_CORE_NUMBER=12
[2025-12-16 18:44:01] Starting ATLAS job with PandaID=6930759992
[2025-12-16 18:44:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 20:02:28]  *** The last 200 lines of the pilot log: ***
[2025-12-16 20:02:28]  protocol_id=None
[2025-12-16 20:02:28]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-16 20:02:28]  replicas=None
[2025-12-16 20:02:28]  scope=mc23_13p6TeV
[2025-12-16 20:02:28]  status=None
[2025-12-16 20:02:28]  status_code=0
[2025-12-16 20:02:28]  storage_token=
[2025-12-16 20:02:28]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6930759992/log.47886831._012013.job.log.tgz.1
[2025-12-16 20:02:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a5/83/log.47886831._012013.job.log.tgz.1
[2025-12-16 20:02:28]  workdir=None
[2025-12-16 20:02:28] ]
[2025-12-16 20:02:28] 2025-12-17 01:01:42,828 | INFO     | transferring file log.47886831._012013.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6930759992/log.47886831._012013.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-16 20:02:28] 2025-12-17 01:01:42,828 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6930759992/log.47886831._012013.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886831._012013.job
[2025-12-16 20:02:28] 2025-12-17 01:01:42,852 | INFO     | adding to output.list: log.47886831._012013.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a5/83/log.47886831._012013.job.log.tg
[2025-12-16 20:02:28] 2025-12-17 01:01:42,853 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-16 20:02:28] 2025-12-17 01:01:42,853 | INFO     | summary of transferred files:
[2025-12-16 20:02:28] 2025-12-17 01:01:42,854 | INFO     |  -- lfn=log.47886831._012013.job.log.tgz.1, status_code=0, status=transferred
[2025-12-16 20:02:28] 2025-12-17 01:01:42,854 | INFO     | stage-out finished correctly
[2025-12-16 20:02:28] 2025-12-17 01:01:43,576 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-16 20:02:28] 2025-12-17 01:01:43,655 | INFO     | job 6930759992 has state=finished
[2025-12-16 20:02:28] 2025-12-17 01:01:43,655 | INFO     | preparing for final server update for job 6930759992 in state='finished'
[2025-12-16 20:02:28] 2025-12-17 01:01:43,656 | INFO     | this job has now completed (state=finished)
[2025-12-16 20:02:28] 2025-12-17 01:01:43,656 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-16 20:02:28] 2025-12-17 01:01:43,656 | INFO     | log transfer has been attempted: DONE
[2025-12-16 20:02:28] 2025-12-17 01:01:43,656 | INFO     | job 6930759992 has finished - writing final server update
[2025-12-16 20:02:28] 2025-12-17 01:01:43,657 | INFO     | total number of processed events: 400 (read)
[2025-12-16 20:02:28] 2025-12-17 01:01:43,658 | INFO     | executing command: lscpu
[2025-12-16 20:02:28] 2025-12-17 01:01:43,682 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-16 20:02:28] 2025-12-17 01:01:44,386 | INFO     | monitor loop #346: job 0:6930759992 is in state 'finished'
[2025-12-16 20:02:28] 2025-12-17 01:01:44,386 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 20:02:28] 2025-12-17 01:01:44,391 | INFO     | time since job start (4648s) is within the limit (174528.0s)
[2025-12-16 20:02:28] 2025-12-17 01:01:46,396 | INFO     | time since job start (4650s) is within the limit (174528.0s)
[2025-12-16 20:02:28] 2025-12-17 01:01:46,889 | INFO     | monitor loop #347: job 0:6930759992 is in state 'finished'
[2025-12-16 20:02:28] 2025-12-17 01:01:46,890 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 20:02:28] 2025-12-17 01:01:48,402 | INFO     | time since job start (4652s) is within the limit (174528.0s)
[2025-12-16 20:02:28] 2025-12-17 01:01:49,393 | INFO     | monitor loop #348: job 0:6930759992 is in state 'finished'
[2025-12-16 20:02:28] 2025-12-17 01:01:49,393 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 20:02:28] 2025-12-17 01:01:49,575 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-16 20:02:28] 2025-12-17 01:01:49,579 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2025-12-16 20:02:28] 2025-12-17 01:01:49,581 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6930759992/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 20:02:28] 2025-12-17 01:01:49,581 | INFO     | extracted standard info from prmon json
[2025-12-16 20:02:28] 2025-12-17 01:01:49,581 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 20:02:28] 2025-12-17 01:01:49,581 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 20:02:28] 2025-12-17 01:01:49,582 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 20:02:28] 2025-12-17 01:01:49,582 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 20:02:28] 2025-12-17 01:01:49,583 | INFO     | fitting pss+swap vs Time
[2025-12-16 20:02:28] 2025-12-17 01:01:49,583 | INFO     | sum of square deviations: 101843770.0
[2025-12-16 20:02:28] 2025-12-17 01:01:49,584 | INFO     | sum of deviations: -8268255004.0
[2025-12-16 20:02:28] 2025-12-17 01:01:49,584 | INFO     | mean x: 1765931064.0
[2025-12-16 20:02:28] 2025-12-17 01:01:49,584 | INFO     | mean y: 2759863.231884058
[2025-12-16 20:02:28] 2025-12-17 01:01:49,584 | INFO     | intersect: 143371061690.99258
[2025-12-16 20:02:28] 2025-12-17 01:01:49,584 | INFO     | chi2: 0.06632767560687557
[2025-12-16 20:02:28] 2025-12-17 01:01:49,584 | INFO     | current memory leak: -81.19 B/s (using 69 data points, chi2=0.07)
[2025-12-16 20:02:28] 2025-12-17 01:01:49,585 | INFO     | could have reported an average CPU frequency of 2037 MHz (6 samples)
[2025-12-16 20:02:28] 2025-12-17 01:01:49,585 | INFO     | ..............................
[2025-12-16 20:02:28] 2025-12-17 01:01:49,585 | INFO     | . Timing measurements:
[2025-12-16 20:02:28] 2025-12-17 01:01:49,585 | INFO     | . get job = 0 s
[2025-12-16 20:02:28] 2025-12-17 01:01:49,585 | INFO     | . initial setup = 2 s
[2025-12-16 20:02:28] 2025-12-17 01:01:49,585 | INFO     | . payload setup = 7 s
[2025-12-16 20:02:28] 2025-12-17 01:01:49,585 | INFO     | . stage-in = 0 s
[2025-12-16 20:02:28] 2025-12-17 01:01:49,586 | INFO     | . payload execution = 4618 s
[2025-12-16 20:02:28] 2025-12-17 01:01:49,586 | INFO     | . stage-out = 0 s
[2025-12-16 20:02:28] 2025-12-17 01:01:49,586 | INFO     | . log creation = 0 s
[2025-12-16 20:02:28] 2025-12-17 01:01:49,586 | INFO     | ..............................
[2025-12-16 20:02:28] 2025-12-17 01:01:50,165 | INFO     | 
[2025-12-16 20:02:28] 2025-12-17 01:01:50,165 | INFO     | job summary report
[2025-12-16 20:02:28] 2025-12-17 01:01:50,165 | INFO     | --------------------------------------------------
[2025-12-16 20:02:28] 2025-12-17 01:01:50,165 | INFO     | PanDA job id: 6930759992
[2025-12-16 20:02:28] 2025-12-17 01:01:50,165 | INFO     | task id: 47886831
[2025-12-16 20:02:28] 2025-12-17 01:01:50,166 | INFO     | errors: (none)
[2025-12-16 20:02:28] 2025-12-17 01:01:50,166 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 20:02:28] 2025-12-17 01:01:50,166 | INFO     | pilot state: finished 
[2025-12-16 20:02:28] 2025-12-17 01:01:50,166 | INFO     | transexitcode: 0
[2025-12-16 20:02:28] 2025-12-17 01:01:50,166 | INFO     | exeerrorcode: 0
[2025-12-16 20:02:28] 2025-12-17 01:01:50,166 | INFO     | exeerrordiag: 
[2025-12-16 20:02:28] 2025-12-17 01:01:50,166 | INFO     | exitcode: 0
[2025-12-16 20:02:28] 2025-12-17 01:01:50,167 | INFO     | exitmsg: OK
[2025-12-16 20:02:28] 2025-12-17 01:01:50,167 | INFO     | cpuconsumptiontime: 50907 s
[2025-12-16 20:02:28] 2025-12-17 01:01:50,167 | INFO     | nevents: 400
[2025-12-16 20:02:28] 2025-12-17 01:01:50,167 | INFO     | neventsw: 0
[2025-12-16 20:02:28] 2025-12-17 01:01:50,167 | INFO     | pid: 32077
[2025-12-16 20:02:28] 2025-12-17 01:01:50,167 | INFO     | pgrp: 32077
[2025-12-16 20:02:28] 2025-12-17 01:01:50,168 | INFO     | corecount: 12
[2025-12-16 20:02:28] 2025-12-17 01:01:50,168 | INFO     | event service: False
[2025-12-16 20:02:28] 2025-12-17 01:01:50,168 | INFO     | sizes: {0: 2283822, 1: 2284021, 6: 2284283, 11: 2284311, 4629: 2310436, 4631: 2319434, 4632: 2319618, 4638: 2319812}
[2025-12-16 20:02:28] 2025-12-17 01:01:50,168 | INFO     | --------------------------------------------------
[2025-12-16 20:02:28] 2025-12-17 01:01:50,168 | INFO     | 
[2025-12-16 20:02:28] 2025-12-17 01:01:50,168 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-16 20:02:28] 2025-12-17 01:01:50,194 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 20:02:28] 2025-12-17 01:01:50,194 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 20:02:28] 2025-12-17 01:01:50,194 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 20:02:28] 2025-12-17 01:01:50,194 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 20:02:28] 2025-12-17 01:01:50,195 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 20:02:28] 2025-12-17 01:01:50,195 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 20:02:28] 2025-12-17 01:01:50,195 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 20:02:28] 2025-12-17 01:01:50,195 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 20:02:28] 2025-12-17 01:01:50,195 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 20:02:28] 2025-12-17 01:01:50,196 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 20:02:28] 2025-12-17 01:01:50,196 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 20:02:28] 2025-12-17 01:01:50,196 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 20:02:28] 2025-12-17 01:01:50,196 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 20:02:28] 2025-12-17 01:01:50,196 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 20:02:28] 2025-12-17 01:01:50,196 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 20:02:28] 2025-12-17 01:01:50,197 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 20:02:28] 2025-12-17 01:01:50,197 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 20:02:28] 2025-12-17 01:01:50,197 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 20:02:28] 2025-12-17 01:01:50,197 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 20:02:28] 2025-12-17 01:01:50,197 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 20:02:28] 2025-12-17 01:01:50,197 | INFO     | job 6930759992 has completed (purged errors)
[2025-12-16 20:02:28] 2025-12-17 01:01:50,198 | INFO     | overall cleanup function is called
[2025-12-16 20:02:28] 2025-12-17 01:01:51,205 | INFO     | --- collectZombieJob: --- 10, [32077]
[2025-12-16 20:02:28] 2025-12-17 01:01:51,206 | INFO     | zombie collector waiting for pid 32077
[2025-12-16 20:02:28] 2025-12-17 01:01:51,206 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 20:02:28] 2025-12-17 01:01:51,206 | INFO     | collected zombie processes
[2025-12-16 20:02:28] 2025-12-17 01:01:51,206 | INFO     | will attempt to kill all subprocesses of pid=32077
[2025-12-16 20:02:28] 2025-12-17 01:01:51,297 | INFO     | process IDs to be killed: [32077] (in reverse order)
[2025-12-16 20:02:28] 2025-12-17 01:01:51,349 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 20:02:28] 2025-12-17 01:01:51,350 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 20:02:28] 2025-12-17 01:01:51,353 | INFO     | did not find any defunct processes belonging to 32077
[2025-12-16 20:02:28] 2025-12-17 01:01:51,357 | INFO     | did not find any defunct processes belonging to 32077
[2025-12-16 20:02:28] 2025-12-17 01:01:51,357 | INFO     | ready for new job
[2025-12-16 20:02:28] 2025-12-17 01:01:51,357 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 20:02:28] 2025-12-17 01:01:51,358 | INFO     | ***************************************
[2025-12-16 20:02:28] 2025-12-17 01:01:51,358 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 20:02:28] 2025-12-17 01:01:51,359 | INFO     | ***************************************
[2025-12-16 20:02:28] 2025-12-17 01:01:51,359 | INFO     | 
[2025-12-16 20:02:28] 2025-12-17 01:01:51,359 | INFO     | architecture information:
[2025-12-16 20:02:28] 2025-12-17 01:01:51,360 | INFO     | executing command: cat /etc/os-release
[2025-12-16 20:02:28] 2025-12-17 01:01:51,374 | INFO     | cat /etc/os-release:
[2025-12-16 20:02:28] NAME="CentOS Linux"
[2025-12-16 20:02:28] VERSION="7 (Core)"
[2025-12-16 20:02:28] ID="centos"
[2025-12-16 20:02:28] ID_LIKE="rhel fedora"
[2025-12-16 20:02:28] VERSION_ID="7"
[2025-12-16 20:02:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 20:02:28] ANSI_COLOR="0;31"
[2025-12-16 20:02:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 20:02:28] HOME_URL="https://www.centos.org/"
[2025-12-16 20:02:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 20:02:28] 
[2025-12-16 20:02:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 20:02:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 20:02:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 20:02:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 20:02:28] 
[2025-12-16 20:02:28] 2025-12-17 01:01:51,374 | INFO     | ***************************************
[2025-12-16 20:02:28] 2025-12-17 01:01:51,877 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-16 20:02:28] 2025-12-17 01:01:51,895 | INFO     | sufficient remaining disk space (29445062656 B)
[2025-12-16 20:02:28] 2025-12-17 01:01:51,895 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 20:02:28] 2025-12-17 01:01:51,895 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 20:02:28] 2025-12-17 01:01:51,895 | INFO     | update_server=False
[2025-12-16 20:02:28] 2025-12-17 01:01:51,895 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 20:02:28] 2025-12-17 01:01:51,896 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-16 20:02:28] 2025-12-17 01:01:51,896 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-16 20:02:28] 2025-12-17 01:01:51,896 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 20:02:28] 2025-12-17 01:01:51,897 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 20:02:28] 2025-12-17 01:01:51,897 | INFO     | will abort loop
[2025-12-16 20:02:28] 2025-12-17 01:01:52,061 | INFO     | all data control threads have been joined
[2025-12-16 20:02:28] 2025-12-17 01:01:52,781 | INFO     | all job control threads have been joined
[2025-12-16 20:02:28] 2025-12-17 01:01:52,901 | INFO     | [job] retrieve thread has finished
[2025-12-16 20:02:28] 2025-12-17 01:01:52,903 | INFO     | [job] job monitor thread has finished
[2025-12-16 20:02:28] 2025-12-17 01:01:52,912 | INFO     | all payload control threads have been joined
[2025-12-16 20:02:28] 2025-12-17 01:01:53,011 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 20:02:28] 2025-12-17 01:01:53,012 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 20:02:28] 2025-12-17 01:01:53,067 | INFO     | [data] control thread has finished
[2025-12-16 20:02:28] 2025-12-17 01:01:53,109 | INFO     | [payload] validate_post thread has finished
[2025-12-16 20:02:28] 2025-12-17 01:01:53,453 | INFO     | [payload] failed_post thread has finished
[2025-12-16 20:02:28] 2025-12-17 01:01:53,673 | INFO     | [data] copytool_in thread has finished
[2025-12-16 20:02:28] 2025-12-17 01:01:53,674 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 20:02:28] 2025-12-17 01:01:53,782 | INFO     | [job] control thread has finished
[2025-12-16 20:02:28] 2025-12-17 01:01:53,828 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 20:02:28] 2025-12-17 01:01:53,902 | INFO     | [data] copytool_out thread has finished
[2025-12-16 20:02:28] 2025-12-17 01:01:53,918 | INFO     | [payload] control thread has finished
[2025-12-16 20:02:28] 2025-12-17 01:01:54,169 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 20:02:28] 2025-12-17 01:01:54,330 | INFO     | [job] validate thread has finished
[2025-12-16 20:02:28] 2025-12-17 01:01:54,677 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 20:02:28] 2025-12-17 01:01:55,682 | INFO     | [job] queue monitor thread has finished
[2025-12-16 20:02:28] 2025-12-17 01:01:58,175 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 20:02:28] 2025-12-17 01:02:21,602 | INFO     | PID=25698 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 20:02:28] 2025-12-17 01:02:21,602 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 20:02:28] 2025-12-17 01:02:21,603 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 20:02:28] 2025-12-17 01:02:21,603 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 20:02:28] 2025-12-17 01:02:23,142 | INFO     | [monitor] cgroup control has ended
[2025-12-16 20:02:28] 2025-12-17 01:02:23,579 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140405005154112)>', '<ExcThread(monitor, started 140403823081216)>']
[2025-12-16 20:02:28] 2025-12-17 01:02:23,613 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 20:02:28] 2025-12-17 01:02:23,613 | INFO     | [monitor] control thread has ended
[2025-12-16 20:02:28] 2025-12-17 01:02:28,604 | INFO     | all workflow threads have been joined
[2025-12-16 20:02:28] 2025-12-17 01:02:28,605 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 20:02:28] 2025-12-17 01:02:28,605 | INFO     | traces error code: 0
[2025-12-16 20:02:28] 2025-12-17 01:02:28,605 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 20:02:28] 2025-12-17 01:02:28,692 [wrapper] ==== pilot stdout END ====
[2025-12-16 20:02:28] 2025-12-17 01:02:28,696 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 20:02:28] 2025-12-17 01:02:28,700 [wrapper] pilotpid: 25698
[2025-12-16 20:02:28] 2025-12-17 01:02:28,704 [wrapper] Pilot exit status: 0
[2025-12-16 20:02:28] 2025-12-17 01:02:28,721 [wrapper] pandaids: 6930759992
[2025-12-16 20:02:28] 2025-12-17 01:02:28,763 [wrapper] cleanup supervisor_pilot 27634 25699
[2025-12-16 20:02:28] 2025-12-17 01:02:28,768 [wrapper] Test setup, not cleaning
[2025-12-16 20:02:28] 2025-12-17 01:02:28,772 [wrapper] apfmon messages muted
[2025-12-16 20:02:28] 2025-12-17 01:02:28,775 [wrapper] ==== wrapper stdout END ====
[2025-12-16 20:02:28] 2025-12-17 01:02:28,779 [wrapper] ==== wrapper stderr END ====
[2025-12-16 20:02:28]  *** Error codes and diagnostics ***
[2025-12-16 20:02:28]     "exeErrorCode": 0,
[2025-12-16 20:02:28]     "exeErrorDiag": "",
[2025-12-16 20:02:28]     "pilotErrorCode": 0,
[2025-12-16 20:02:28]     "pilotErrorDiag": "",
[2025-12-16 20:02:28]  *** Listing of results directory ***
[2025-12-16 20:02:28] total 345292
[2025-12-16 20:02:28] -rw-r--r-- 1 boincer umatlas    579449 Dec 16 01:04 pilot3.tar.gz
[2025-12-16 20:02:28] -rwx------ 1 boincer umatlas     36322 Dec 16 01:05 runpilot2-wrapper.sh
[2025-12-16 20:02:28] -rw-r--r-- 1 boincer umatlas      5112 Dec 16 01:05 queuedata.json
[2025-12-16 20:02:28] -rw-r--r-- 1 boincer umatlas       100 Dec 16 18:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 20:02:28] -rwxr-xr-x 1 boincer umatlas      7986 Dec 16 18:43 run_atlas
[2025-12-16 20:02:28] -rw-r--r-- 1 boincer umatlas       105 Dec 16 18:43 job.xml
[2025-12-16 20:02:28] -rw-r--r-- 2 boincer umatlas 193287076 Dec 16 18:43 EVNT.47886829._000483.pool.root.1
[2025-12-16 20:02:28] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 18:43 start_atlas.sh
[2025-12-16 20:02:28] drwxrwx--x 2 boincer umatlas      4096 Dec 16 18:43 shared
[2025-12-16 20:02:28] -rw-r--r-- 2 boincer umatlas    592415 Dec 16 18:43 input.tar.gz
[2025-12-16 20:02:28] -rw-r--r-- 1 boincer umatlas         0 Dec 16 18:43 boinc_lockfile
[2025-12-16 20:02:28] -rw-r--r-- 1 boincer umatlas      2539 Dec 16 18:44 pandaJob.out
[2025-12-16 20:02:28] -rw------- 1 boincer umatlas        57 Dec 16 18:44 setup.sh.local
[2025-12-16 20:02:28] -rw------- 1 boincer umatlas    987401 Dec 16 18:44 agis_schedconf.cvmfs.json
[2025-12-16 20:02:28] -rw------- 1 boincer umatlas   1516240 Dec 16 18:44 agis_ddmendpoints.agis.ALL.json
[2025-12-16 20:02:28] drwx------ 5 boincer umatlas      4096 Dec 16 18:44 pilot3
[2025-12-16 20:02:28] -rw-r--r-- 1 boincer umatlas      5953 Dec 16 20:00 init_data.xml
[2025-12-16 20:02:28] -rw------- 1 boincer umatlas 154242984 Dec 16 20:01 HITS.47886831._012013.pool.root.1
[2025-12-16 20:02:28] -rw-r--r-- 1 boincer umatlas       529 Dec 16 20:01 boinc_task_state.xml
[2025-12-16 20:02:28] -rw------- 1 boincer umatlas      1043 Dec 16 20:01 memory_monitor_summary.json
[2025-12-16 20:02:28] -rw------- 1 boincer umatlas    395667 Dec 16 20:01 log.47886831._012013.job.log.tgz.1
[2025-12-16 20:02:28] -rw------- 1 boincer umatlas      7852 Dec 16 20:01 heartbeat.json
[2025-12-16 20:02:28] -rw-r--r-- 1 boincer umatlas        27 Dec 16 20:01 wrapper_checkpoint.txt
[2025-12-16 20:02:28] -rw-r--r-- 1 boincer umatlas      8192 Dec 16 20:01 boinc_mmap_file
[2025-12-16 20:02:28] -rw------- 1 boincer umatlas        95 Dec 16 20:02 pilot_heartbeat.json
[2025-12-16 20:02:28] -rw------- 1 boincer umatlas      4932 Dec 16 20:02 pilotlog.txt
[2025-12-16 20:02:28] -rw------- 1 boincer umatlas    673825 Dec 16 20:02 log.47886831._012013.job.log.1
[2025-12-16 20:02:28] -rw------- 1 boincer umatlas       357 Dec 16 20:02 output.list
[2025-12-16 20:02:28] -rw-r--r-- 1 boincer umatlas       620 Dec 16 20:02 runtime_log
[2025-12-16 20:02:28] -rw------- 1 boincer umatlas   1085440 Dec 16 20:02 result.tar.gz
[2025-12-16 20:02:28] -rw-r--r-- 1 boincer umatlas      9344 Dec 16 20:02 runtime_log.err
[2025-12-16 20:02:28] -rw------- 1 boincer umatlas       659 Dec 16 20:02 lS7NDmYMdp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmw3UKDmdqtvdm.diag
[2025-12-16 20:02:28] -rw-r--r-- 1 boincer umatlas     21840 Dec 16 20:02 stderr.txt
[2025-12-16 20:02:28] HITS file was successfully produced:
[2025-12-16 20:02:28] -rw------- 1 boincer umatlas 154242984 Dec 16 20:01 shared/HITS.pool.root.1
[2025-12-16 20:02:28]  *** Contents of shared directory: ***
[2025-12-16 20:02:28] total 341048
[2025-12-16 20:02:28] -rw-r--r-- 2 boincer umatlas 193287076 Dec 16 18:43 ATLAS.root_0
[2025-12-16 20:02:28] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 18:43 start_atlas.sh
[2025-12-16 20:02:28] -rw-r--r-- 2 boincer umatlas    592415 Dec 16 18:43 input.tar.gz
[2025-12-16 20:02:28] -rw------- 1 boincer umatlas 154242984 Dec 16 20:01 HITS.pool.root.1
[2025-12-16 20:02:28] -rw------- 1 boincer umatlas   1085440 Dec 16 20:02 result.tar.gz
20:02:30 (21957): run_atlas exited; CPU time 50891.652816
20:02:30 (21957): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN