Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:44:31 (3013483): wrapper (7.7.26015): starting
18:44:31 (3013483): wrapper: running run_atlas (--nthreads 9)
[2025-12-16 18:44:31] Arguments: --nthreads 9
[2025-12-16 18:44:31] Threads: 9
[2025-12-16 18:44:31] Checking for CVMFS
[2025-12-16 18:44:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 18:44:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 18:44:31] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 18:44:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 18:44:32] 2.13.3.0 11314 59527 246704 154092 2 690 31237607 32935936 34365 16776704 0 526121869 99.601 559730615 34275 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-16 18:44:32] CVMFS is ok
[2025-12-16 18:44:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 18:44:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 18:44:32] Further information can be found at the LHC@home message board.
[2025-12-16 18:44:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 18:44:32] Checking for apptainer binary...
[2025-12-16 18:44:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 18:44:32] Running /usr/bin/apptainer --version
[2025-12-16 18:44:32] apptainer version 1.4.5-2.el9
[2025-12-16 18:44:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 18:44:32] c7-2-10.aglt2.org
[2025-12-16 18:44:32] apptainer works
[2025-12-16 18:44:32] Set ATHENA_PROC_NUMBER=9
[2025-12-16 18:44:32] Set ATHENA_CORE_NUMBER=9
[2025-12-16 18:44:32] Starting ATLAS job with PandaID=6931596545
[2025-12-16 18:44:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 20:21:14]  *** The last 200 lines of the pilot log: ***
[2025-12-16 20:21:14]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6931596545/log.47886831._014130.job.log.tgz.1
[2025-12-16 20:21:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a5/6f/log.47886831._014130.job.log.tgz.1
[2025-12-16 20:21:14]  workdir=None
[2025-12-16 20:21:14] ]
[2025-12-16 20:21:14] 2025-12-17 01:20:27,345 | INFO     | transferring file log.47886831._014130.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6931596545/log.47886831._014130.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-16 20:21:14] 2025-12-17 01:20:27,345 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6931596545/log.47886831._014130.job.log.tgz.1 /tmp/boinchome/slots/3/log.47886831._014130.job
[2025-12-16 20:21:14] 2025-12-17 01:20:27,364 | INFO     | adding to output.list: log.47886831._014130.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a5/6f/log.47886831._014130.job.log.tg
[2025-12-16 20:21:14] 2025-12-17 01:20:27,365 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-16 20:21:14] 2025-12-17 01:20:27,365 | INFO     | summary of transferred files:
[2025-12-16 20:21:14] 2025-12-17 01:20:27,365 | INFO     |  -- lfn=log.47886831._014130.job.log.tgz.1, status_code=0, status=transferred
[2025-12-16 20:21:14] 2025-12-17 01:20:27,366 | INFO     | stage-out finished correctly
[2025-12-16 20:21:14] 2025-12-17 01:20:27,420 | INFO     | time since job start (5732s) is within the limit (174528.0s)
[2025-12-16 20:21:14] 2025-12-17 01:20:27,922 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-16 20:21:14] 2025-12-17 01:20:29,002 | INFO     | job 6931596545 has state=finished
[2025-12-16 20:21:14] 2025-12-17 01:20:29,003 | INFO     | preparing for final server update for job 6931596545 in state='finished'
[2025-12-16 20:21:14] 2025-12-17 01:20:29,003 | INFO     | this job has now completed (state=finished)
[2025-12-16 20:21:14] 2025-12-17 01:20:29,003 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-16 20:21:14] 2025-12-17 01:20:29,003 | INFO     | log transfer has been attempted: DONE
[2025-12-16 20:21:14] 2025-12-17 01:20:29,003 | INFO     | job 6931596545 has finished - writing final server update
[2025-12-16 20:21:14] 2025-12-17 01:20:29,003 | INFO     | total number of processed events: 400 (read)
[2025-12-16 20:21:14] 2025-12-17 01:20:29,011 | INFO     | executing command: lscpu
[2025-12-16 20:21:14] 2025-12-17 01:20:29,094 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-16 20:21:14] 2025-12-17 01:20:29,427 | INFO     | time since job start (5734s) is within the limit (174528.0s)
[2025-12-16 20:21:14] 2025-12-17 01:20:29,660 | INFO     | monitor loop #373: job 0:6931596545 is in state 'finished'
[2025-12-16 20:21:14] 2025-12-17 01:20:29,660 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 20:21:14] 2025-12-17 01:20:31,434 | INFO     | time since job start (5736s) is within the limit (174528.0s)
[2025-12-16 20:21:14] 2025-12-17 01:20:32,163 | INFO     | monitor loop #374: job 0:6931596545 is in state 'finished'
[2025-12-16 20:21:14] 2025-12-17 01:20:32,163 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 20:21:14] 2025-12-17 01:20:33,441 | INFO     | time since job start (5738s) is within the limit (174528.0s)
[2025-12-16 20:21:14] 2025-12-17 01:20:34,671 | INFO     | monitor loop #375: job 0:6931596545 is in state 'finished'
[2025-12-16 20:21:14] 2025-12-17 01:20:34,673 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 20:21:14] 2025-12-17 01:20:35,447 | INFO     | time since job start (5740s) is within the limit (174528.0s)
[2025-12-16 20:21:14] 2025-12-17 01:20:37,178 | INFO     | monitor loop #376: job 0:6931596545 is in state 'finished'
[2025-12-16 20:21:14] 2025-12-17 01:20:37,178 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 20:21:14] 2025-12-17 01:20:37,454 | INFO     | time since job start (5742s) is within the limit (174528.0s)
[2025-12-16 20:21:14] 2025-12-17 01:20:39,461 | INFO     | time since job start (5744s) is within the limit (174528.0s)
[2025-12-16 20:21:14] 2025-12-17 01:20:39,686 | INFO     | monitor loop #377: job 0:6931596545 is in state 'finished'
[2025-12-16 20:21:14] 2025-12-17 01:20:39,686 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 20:21:14] 2025-12-17 01:20:41,135 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-16 20:21:14] 2025-12-17 01:20:41,161 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3284.5054375000004
[2025-12-16 20:21:14] 2025-12-17 01:20:41,177 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6931596545/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 20:21:14] 2025-12-17 01:20:41,177 | INFO     | extracted standard info from prmon json
[2025-12-16 20:21:14] 2025-12-17 01:20:41,178 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 20:21:14] 2025-12-17 01:20:41,178 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 20:21:14] 2025-12-17 01:20:41,178 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 20:21:14] 2025-12-17 01:20:41,178 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 20:21:14] 2025-12-17 01:20:41,180 | INFO     | fitting pss+swap vs Time
[2025-12-16 20:21:14] 2025-12-17 01:20:41,180 | INFO     | sum of square deviations: 204159802.9885056
[2025-12-16 20:21:14] 2025-12-17 01:20:41,181 | INFO     | sum of deviations: -16290035576.459768
[2025-12-16 20:21:14] 2025-12-17 01:20:41,181 | INFO     | mean x: 1765931660.0114942
[2025-12-16 20:21:14] 2025-12-17 01:20:41,181 | INFO     | mean y: 2623400.459770115
[2025-12-16 20:21:14] 2025-12-17 01:20:41,181 | INFO     | intersect: 140907390872.25986
[2025-12-16 20:21:14] 2025-12-17 01:20:41,181 | INFO     | chi2: 0.16332716971228886
[2025-12-16 20:21:14] 2025-12-17 01:20:41,181 | INFO     | current memory leak: -79.79 B/s (using 87 data points, chi2=0.16)
[2025-12-16 20:21:14] 2025-12-17 01:20:41,181 | INFO     | could have reported an average CPU frequency of 3271 MHz (7 samples)
[2025-12-16 20:21:14] 2025-12-17 01:20:41,181 | INFO     | ..............................
[2025-12-16 20:21:14] 2025-12-17 01:20:41,182 | INFO     | . Timing measurements:
[2025-12-16 20:21:14] 2025-12-17 01:20:41,182 | INFO     | . get job = 0 s
[2025-12-16 20:21:14] 2025-12-17 01:20:41,182 | INFO     | . initial setup = 3 s
[2025-12-16 20:21:14] 2025-12-17 01:20:41,182 | INFO     | . payload setup = 10 s
[2025-12-16 20:21:14] 2025-12-17 01:20:41,182 | INFO     | . stage-in = 0 s
[2025-12-16 20:21:14] 2025-12-17 01:20:41,182 | INFO     | . payload execution = 5695 s
[2025-12-16 20:21:14] 2025-12-17 01:20:41,182 | INFO     | . stage-out = 1 s
[2025-12-16 20:21:14] 2025-12-17 01:20:41,182 | INFO     | . log creation = 0 s
[2025-12-16 20:21:14] 2025-12-17 01:20:41,182 | INFO     | ..............................
[2025-12-16 20:21:14] 2025-12-17 01:20:41,269 | INFO     | 
[2025-12-16 20:21:14] 2025-12-17 01:20:41,269 | INFO     | job summary report
[2025-12-16 20:21:14] 2025-12-17 01:20:41,269 | INFO     | --------------------------------------------------
[2025-12-16 20:21:14] 2025-12-17 01:20:41,269 | INFO     | PanDA job id: 6931596545
[2025-12-16 20:21:14] 2025-12-17 01:20:41,269 | INFO     | task id: 47886831
[2025-12-16 20:21:14] 2025-12-17 01:20:41,270 | INFO     | errors: (none)
[2025-12-16 20:21:14] 2025-12-17 01:20:41,270 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 20:21:14] 2025-12-17 01:20:41,270 | INFO     | pilot state: finished 
[2025-12-16 20:21:14] 2025-12-17 01:20:41,270 | INFO     | transexitcode: 0
[2025-12-16 20:21:14] 2025-12-17 01:20:41,270 | INFO     | exeerrorcode: 0
[2025-12-16 20:21:14] 2025-12-17 01:20:41,270 | INFO     | exeerrordiag: 
[2025-12-16 20:21:14] 2025-12-17 01:20:41,270 | INFO     | exitcode: 0
[2025-12-16 20:21:14] 2025-12-17 01:20:41,270 | INFO     | exitmsg: OK
[2025-12-16 20:21:14] 2025-12-17 01:20:41,270 | INFO     | cpuconsumptiontime: 33728 s
[2025-12-16 20:21:14] 2025-12-17 01:20:41,270 | INFO     | nevents: 400
[2025-12-16 20:21:14] 2025-12-17 01:20:41,270 | INFO     | neventsw: 0
[2025-12-16 20:21:14] 2025-12-17 01:20:41,270 | INFO     | pid: 3027695
[2025-12-16 20:21:14] 2025-12-17 01:20:41,270 | INFO     | pgrp: 3027695
[2025-12-16 20:21:14] 2025-12-17 01:20:41,270 | INFO     | corecount: 9
[2025-12-16 20:21:14] 2025-12-17 01:20:41,270 | INFO     | event service: False
[2025-12-16 20:21:14] 2025-12-17 01:20:41,270 | INFO     | sizes: {0: 2283994, 8: 2284256, 11: 2284284, 5710: 2310955, 5712: 2319981, 5713: 2320037, 5726: 2320359}
[2025-12-16 20:21:14] 2025-12-17 01:20:41,271 | INFO     | --------------------------------------------------
[2025-12-16 20:21:14] 2025-12-17 01:20:41,271 | INFO     | 
[2025-12-16 20:21:14] 2025-12-17 01:20:41,271 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-12-16 20:21:14] 2025-12-17 01:20:41,325 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 20:21:14] 2025-12-17 01:20:41,326 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 20:21:14] 2025-12-17 01:20:41,326 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 20:21:14] 2025-12-17 01:20:41,326 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 20:21:14] 2025-12-17 01:20:41,326 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 20:21:14] 2025-12-17 01:20:41,326 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 20:21:14] 2025-12-17 01:20:41,326 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 20:21:14] 2025-12-17 01:20:41,326 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 20:21:14] 2025-12-17 01:20:41,326 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 20:21:14] 2025-12-17 01:20:41,326 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 20:21:14] 2025-12-17 01:20:41,327 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 20:21:14] 2025-12-17 01:20:41,327 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 20:21:14] 2025-12-17 01:20:41,327 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 20:21:14] 2025-12-17 01:20:41,327 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 20:21:14] 2025-12-17 01:20:41,327 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 20:21:14] 2025-12-17 01:20:41,327 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 20:21:14] 2025-12-17 01:20:41,327 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 20:21:14] 2025-12-17 01:20:41,327 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 20:21:14] 2025-12-17 01:20:41,327 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 20:21:14] 2025-12-17 01:20:41,327 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 20:21:14] 2025-12-17 01:20:41,327 | INFO     | job 6931596545 has completed (purged errors)
[2025-12-16 20:21:14] 2025-12-17 01:20:41,328 | INFO     | overall cleanup function is called
[2025-12-16 20:21:14] 2025-12-17 01:20:42,339 | INFO     | --- collectZombieJob: --- 10, [3027695]
[2025-12-16 20:21:14] 2025-12-17 01:20:42,339 | INFO     | zombie collector waiting for pid 3027695
[2025-12-16 20:21:14] 2025-12-17 01:20:42,340 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 20:21:14] 2025-12-17 01:20:42,340 | INFO     | collected zombie processes
[2025-12-16 20:21:14] 2025-12-17 01:20:42,340 | INFO     | will attempt to kill all subprocesses of pid=3027695
[2025-12-16 20:21:14] 2025-12-17 01:20:44,105 | INFO     | process IDs to be killed: [3027695] (in reverse order)
[2025-12-16 20:21:14] 2025-12-17 01:20:44,486 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 20:21:14] 2025-12-17 01:20:44,487 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 20:21:14] 2025-12-17 01:20:44,513 | INFO     | did not find any defunct processes belonging to 3027695
[2025-12-16 20:21:14] 2025-12-17 01:20:44,540 | INFO     | did not find any defunct processes belonging to 3027695
[2025-12-16 20:21:14] 2025-12-17 01:20:44,541 | INFO     | ready for new job
[2025-12-16 20:21:14] 2025-12-17 01:20:44,541 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 20:21:14] 2025-12-17 01:20:44,542 | INFO     | ***************************************
[2025-12-16 20:21:14] 2025-12-17 01:20:44,543 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 20:21:14] 2025-12-17 01:20:44,543 | INFO     | ***************************************
[2025-12-16 20:21:14] 2025-12-17 01:20:44,543 | INFO     | 
[2025-12-16 20:21:14] 2025-12-17 01:20:44,547 | INFO     | architecture information:
[2025-12-16 20:21:14] 2025-12-17 01:20:44,548 | INFO     | executing command: cat /etc/os-release
[2025-12-16 20:21:14] 2025-12-17 01:20:44,620 | INFO     | cat /etc/os-release:
[2025-12-16 20:21:14] NAME="CentOS Linux"
[2025-12-16 20:21:14] VERSION="7 (Core)"
[2025-12-16 20:21:14] ID="centos"
[2025-12-16 20:21:14] ID_LIKE="rhel fedora"
[2025-12-16 20:21:14] VERSION_ID="7"
[2025-12-16 20:21:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 20:21:14] ANSI_COLOR="0;31"
[2025-12-16 20:21:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 20:21:14] HOME_URL="https://www.centos.org/"
[2025-12-16 20:21:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 20:21:14] 
[2025-12-16 20:21:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 20:21:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 20:21:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 20:21:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 20:21:14] 
[2025-12-16 20:21:14] 2025-12-17 01:20:44,621 | INFO     | ***************************************
[2025-12-16 20:21:14] 2025-12-17 01:20:45,153 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-12-16 20:21:14] 2025-12-17 01:20:45,182 | INFO     | sufficient remaining disk space (74224500736 B)
[2025-12-16 20:21:14] 2025-12-17 01:20:45,183 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 20:21:14] 2025-12-17 01:20:45,183 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 20:21:14] 2025-12-17 01:20:45,183 | INFO     | update_server=False
[2025-12-16 20:21:14] 2025-12-17 01:20:45,183 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 20:21:14] 2025-12-17 01:20:45,656 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 20:21:14] 2025-12-17 01:20:45,705 | INFO     | all payload control threads have been joined
[2025-12-16 20:21:14] 2025-12-17 01:20:45,725 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 20:21:14] 2025-12-17 01:20:45,726 | INFO     | aborting loop
[2025-12-16 20:21:14] 2025-12-17 01:20:45,909 | INFO     | all data control threads have been joined
[2025-12-16 20:21:14] 2025-12-17 01:20:46,188 | INFO     | [job] retrieve thread has finished
[2025-12-16 20:21:14] 2025-12-17 01:20:46,249 | INFO     | [data] copytool_in thread has finished
[2025-12-16 20:21:14] 2025-12-17 01:20:46,273 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 20:21:14] 2025-12-17 01:20:46,341 | INFO     | [payload] failed_post thread has finished
[2025-12-16 20:21:14] 2025-12-17 01:20:46,403 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 20:21:14] 2025-12-17 01:20:46,419 | INFO     | all job control threads have been joined
[2025-12-16 20:21:14] 2025-12-17 01:20:46,710 | INFO     | [payload] control thread has finished
[2025-12-16 20:21:14] 2025-12-17 01:20:46,731 | INFO     | [job] job monitor thread has finished
[2025-12-16 20:21:14] 2025-12-17 01:20:46,774 | INFO     | [job] validate thread has finished
[2025-12-16 20:21:14] 2025-12-17 01:20:46,812 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 20:21:14] 2025-12-17 01:20:46,915 | INFO     | [data] control thread has finished
[2025-12-16 20:21:14] 2025-12-17 01:20:46,939 | INFO     | [payload] validate_post thread has finished
[2025-12-16 20:21:14] 2025-12-17 01:20:46,986 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 20:21:14] 2025-12-17 01:20:47,279 | INFO     | [job] queue monitor thread has finished
[2025-12-16 20:21:14] 2025-12-17 01:20:47,425 | INFO     | [job] control thread has finished
[2025-12-16 20:21:14] 2025-12-17 01:20:47,484 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 20:21:14] 2025-12-17 01:20:47,590 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 20:21:14] 2025-12-17 01:20:47,675 | INFO     | [data] copytool_out thread has finished
[2025-12-16 20:21:14] 2025-12-17 01:20:51,608 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 20:21:14] 2025-12-17 01:21:04,851 | INFO     | [monitor] cgroup control has ended
[2025-12-16 20:21:14] 2025-12-17 01:21:05,809 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140388910286656)>', '<ExcThread(monitor, started 140388539012864)>']
[2025-12-16 20:21:14] 2025-12-17 01:21:10,840 | INFO     | all workflow threads have been joined
[2025-12-16 20:21:14] 2025-12-17 01:21:10,840 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 20:21:14] 2025-12-17 01:21:10,841 | INFO     | traces error code: 0
[2025-12-16 20:21:14] 2025-12-17 01:21:10,844 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 20:21:14] 2025-12-17 01:21:13,531 | INFO     | PID=3018095 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 20:21:14] 2025-12-17 01:21:13,531 | INFO     | .. there are 41 such processes running
[2025-12-16 20:21:14] 2025-12-17 01:21:13,531 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 20:21:14] 2025-12-17 01:21:13,531 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 20:21:14] 2025-12-17 01:21:13,531 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 20:21:14] 2025-12-17 01:21:13,531 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 20:21:14] 2025-12-17 01:21:13,531 | INFO     | [monitor] control thread has ended
[2025-12-16 20:21:14] 2025-12-17 01:21:13,713 [wrapper] ==== pilot stdout END ====
[2025-12-16 20:21:14] 2025-12-17 01:21:13,717 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 20:21:14] 2025-12-17 01:21:13,720 [wrapper] pilotpid: 3018095
[2025-12-16 20:21:14] 2025-12-17 01:21:13,722 [wrapper] Pilot exit status: 0
[2025-12-16 20:21:14] 2025-12-17 01:21:13,739 [wrapper] pandaids: 6931596545
[2025-12-16 20:21:14] 2025-12-17 01:21:13,869 [wrapper] cleanup supervisor_pilot 4009369 3018096
[2025-12-16 20:21:14] 2025-12-17 01:21:13,873 [wrapper] Test setup, not cleaning
[2025-12-16 20:21:14] 2025-12-17 01:21:13,883 [wrapper] apfmon messages muted
[2025-12-16 20:21:14] 2025-12-17 01:21:13,895 [wrapper] ==== wrapper stdout END ====
[2025-12-16 20:21:14] 2025-12-17 01:21:13,931 [wrapper] ==== wrapper stderr END ====
[2025-12-16 20:21:14]  *** Error codes and diagnostics ***
[2025-12-16 20:21:14]     "exeErrorCode": 0,
[2025-12-16 20:21:14]     "exeErrorDiag": "",
[2025-12-16 20:21:14]     "pilotErrorCode": 0,
[2025-12-16 20:21:14]     "pilotErrorDiag": "",
[2025-12-16 20:21:14]  *** Listing of results directory ***
[2025-12-16 20:21:14] total 334512
[2025-12-16 20:21:14] -rw-r--r--. 1 boincer umatlas    579449 Dec 16 12:35 pilot3.tar.gz
[2025-12-16 20:21:14] -rwx------. 1 boincer umatlas     36322 Dec 16 12:39 runpilot2-wrapper.sh
[2025-12-16 20:21:14] -rw-r--r--. 1 boincer umatlas      5112 Dec 16 12:40 queuedata.json
[2025-12-16 20:21:14] -rw-r--r--. 1 boincer umatlas       100 Dec 16 18:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 20:21:14] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 16 18:44 run_atlas
[2025-12-16 20:21:14] -rw-r--r--. 1 boincer umatlas       105 Dec 16 18:44 job.xml
[2025-12-16 20:21:14] -rw-r--r--. 2 boincer umatlas 190584904 Dec 16 18:44 EVNT.47886829._000499.pool.root.1
[2025-12-16 20:21:14] -rw-r--r--. 2 boincer umatlas     15847 Dec 16 18:44 start_atlas.sh
[2025-12-16 20:21:14] drwxrwx--x. 2 boincer umatlas      4096 Dec 16 18:44 shared
[2025-12-16 20:21:14] -rw-r--r--. 2 boincer umatlas    592413 Dec 16 18:44 input.tar.gz
[2025-12-16 20:21:14] -rw-r--r--. 1 boincer umatlas         0 Dec 16 18:44 boinc_lockfile
[2025-12-16 20:21:14] -rw-r--r--. 1 boincer umatlas      2540 Dec 16 18:44 pandaJob.out
[2025-12-16 20:21:14] -rw-------. 1 boincer umatlas        57 Dec 16 18:44 setup.sh.local
[2025-12-16 20:21:14] -rw-------. 1 boincer umatlas    987401 Dec 16 18:44 agis_schedconf.cvmfs.json
[2025-12-16 20:21:14] -rw-------. 1 boincer umatlas   1516240 Dec 16 18:44 agis_ddmendpoints.agis.ALL.json
[2025-12-16 20:21:14] drwx------. 5 boincer umatlas      4096 Dec 16 18:44 pilot3
[2025-12-16 20:21:14] -rw-r--r--. 1 boincer umatlas      6943 Dec 16 20:18 init_data.xml
[2025-12-16 20:21:14] -rw-------. 1 boincer umatlas 145737723 Dec 16 20:19 HITS.47886831._014130.pool.root.1
[2025-12-16 20:21:14] -rw-r--r--. 1 boincer umatlas       529 Dec 16 20:20 boinc_task_state.xml
[2025-12-16 20:21:14] -rw-------. 1 boincer umatlas      1044 Dec 16 20:20 memory_monitor_summary.json
[2025-12-16 20:21:14] -rw-------. 1 boincer umatlas    362362 Dec 16 20:20 log.47886831._014130.job.log.tgz.1
[2025-12-16 20:21:14] -rw-------. 1 boincer umatlas        95 Dec 16 20:20 pilot_heartbeat.json
[2025-12-16 20:21:14] -rw-------. 1 boincer umatlas      7793 Dec 16 20:20 heartbeat.json
[2025-12-16 20:21:14] -rw-r--r--. 1 boincer umatlas        27 Dec 16 20:21 wrapper_checkpoint.txt
[2025-12-16 20:21:14] -rw-r--r--. 1 boincer umatlas      8192 Dec 16 20:21 boinc_mmap_file
[2025-12-16 20:21:14] -rw-------. 1 boincer umatlas       823 Dec 16 20:21 pilotlog.txt
[2025-12-16 20:21:14] -rw-------. 1 boincer umatlas    790764 Dec 16 20:21 log.47886831._014130.job.log.1
[2025-12-16 20:21:14] -rw-------. 1 boincer umatlas       357 Dec 16 20:21 output.list
[2025-12-16 20:21:14] -rw-r--r--. 1 boincer umatlas       620 Dec 16 20:21 runtime_log
[2025-12-16 20:21:14] -rw-------. 1 boincer umatlas   1167360 Dec 16 20:21 result.tar.gz
[2025-12-16 20:21:14] -rw-------. 1 boincer umatlas       655 Dec 16 20:21 z4tMDmvBop8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmp0VKDmMyiAfn.diag
[2025-12-16 20:21:14] -rw-r--r--. 1 boincer umatlas      9337 Dec 16 20:21 runtime_log.err
[2025-12-16 20:21:14] -rw-r--r--. 1 boincer umatlas     22372 Dec 16 20:21 stderr.txt
[2025-12-16 20:21:14] HITS file was successfully produced:
[2025-12-16 20:21:14] -rw-------. 1 boincer umatlas 145737723 Dec 16 20:19 shared/HITS.pool.root.1
[2025-12-16 20:21:14]  *** Contents of shared directory: ***
[2025-12-16 20:21:14] total 330188
[2025-12-16 20:21:14] -rw-r--r--. 2 boincer umatlas 190584904 Dec 16 18:44 ATLAS.root_0
[2025-12-16 20:21:14] -rw-r--r--. 2 boincer umatlas     15847 Dec 16 18:44 start_atlas.sh
[2025-12-16 20:21:14] -rw-r--r--. 2 boincer umatlas    592413 Dec 16 18:44 input.tar.gz
[2025-12-16 20:21:14] -rw-------. 1 boincer umatlas 145737723 Dec 16 20:19 HITS.pool.root.1
[2025-12-16 20:21:14] -rw-------. 1 boincer umatlas   1167360 Dec 16 20:21 result.tar.gz
20:21:16 (3013483): run_atlas exited; CPU time 33971.372828
20:21:16 (3013483): called boinc_finish(0)

</stderr_txt>
]]>

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