Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:22:42 (1643880): wrapper (7.7.26015): starting
17:22:42 (1643880): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 17:22:42] Arguments: --nthreads 8
[2025-12-16 17:22:42] Threads: 8
[2025-12-16 17:22:42] Checking for CVMFS
[2025-12-16 17:22:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 17:22:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 17:22:43] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 17:22:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 17:22:44] 2.13.3.0 11830 59310 372996 154090 1 245 27695911 32935936 26147 16776704 0 318794110 99.497 404896490 32478 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-16 17:22:44] CVMFS is ok
[2025-12-16 17:22:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 17:22:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 17:22:44] Further information can be found at the LHC@home message board.
[2025-12-16 17:22:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 17:22:44] Checking for apptainer binary...
[2025-12-16 17:22:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 17:22:44] Running /usr/bin/apptainer --version
[2025-12-16 17:22:44] apptainer version 1.4.5-2.el9
[2025-12-16 17:22:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 17:22:45] c6-8-25-1.aglt2.org
[2025-12-16 17:22:45] apptainer works
[2025-12-16 17:22:45] Set ATHENA_PROC_NUMBER=8
[2025-12-16 17:22:45] Set ATHENA_CORE_NUMBER=8
[2025-12-16 17:22:45] Starting ATLAS job with PandaID=6931597374
[2025-12-16 17:22:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 20:03:01]  *** The last 200 lines of the pilot log: ***
[2025-12-16 20:03:01] 2025-12-17 00:40:15,319 | INFO     | maximum number of monitored processes: 6
[2025-12-16 20:03:01] 2025-12-17 00:40:16,755 | INFO     | time since job start (8213s) is within the limit (174528.0s)
[2025-12-16 20:03:01] 2025-12-17 00:40:17,823 | INFO     | monitor loop #527: job 0:6931597374 is in state 'finished'
[2025-12-16 20:03:01] 2025-12-17 00:40:17,824 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 20:03:01] 2025-12-17 00:40:18,762 | INFO     | time since job start (8215s) is within the limit (174528.0s)
[2025-12-16 20:03:01] 2025-12-17 00:40:20,329 | INFO     | monitor loop #528: job 0:6931597374 is in state 'finished'
[2025-12-16 20:03:01] 2025-12-17 00:40:20,330 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 20:03:01] 2025-12-17 00:40:20,769 | INFO     | time since job start (8217s) is within the limit (174528.0s)
[2025-12-16 20:03:01] 2025-12-17 00:40:21,549 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-16 20:03:01] 2025-12-17 00:40:21,557 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2643.130364583333
[2025-12-16 20:03:01] 2025-12-17 00:40:21,576 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6931597374/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 20:03:01] 2025-12-17 00:40:21,577 | INFO     | extracted standard info from prmon json
[2025-12-16 20:03:01] 2025-12-17 00:40:21,577 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 20:03:01] 2025-12-17 00:40:21,577 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 20:03:01] 2025-12-17 00:40:21,578 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 20:03:01] 2025-12-17 00:40:21,578 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 20:03:01] 2025-12-17 00:40:21,581 | INFO     | fitting pss+swap vs Time
[2025-12-16 20:03:01] 2025-12-17 00:40:21,582 | INFO     | sum of square deviations: 746317930.3059697
[2025-12-16 20:03:01] 2025-12-17 00:40:21,582 | INFO     | sum of deviations: -19887393586.82836
[2025-12-16 20:03:01] 2025-12-17 00:40:21,582 | INFO     | mean x: 1765927913.141791
[2025-12-16 20:03:01] 2025-12-17 00:40:21,583 | INFO     | mean y: 2580842.2014925373
[2025-12-16 20:03:01] 2025-12-17 00:40:21,583 | INFO     | intersect: 47059876437.68469
[2025-12-16 20:03:01] 2025-12-17 00:40:21,583 | INFO     | chi2: 1.7304237923739194
[2025-12-16 20:03:01] 2025-12-17 00:40:21,583 | INFO     | sum of square deviations: 665897510.9922459
[2025-12-16 20:03:01] 2025-12-17 00:40:21,584 | INFO     | sum of deviations: -18405739584.364334
[2025-12-16 20:03:01] 2025-12-17 00:40:21,584 | INFO     | mean x: 1765927760.6589148
[2025-12-16 20:03:01] 2025-12-17 00:40:21,584 | INFO     | mean y: 2583652.968992248
[2025-12-16 20:03:01] 2025-12-17 00:40:21,584 | INFO     | intersect: 48813708414.578354
[2025-12-16 20:03:01] 2025-12-17 00:40:21,584 | INFO     | chi2: 1.726503083800655
[2025-12-16 20:03:01] 2025-12-17 00:40:21,584 | INFO     | current chi2=1.726503083800655 (change=0.22657505002781553 %)
[2025-12-16 20:03:01] 2025-12-17 00:40:21,585 | INFO     | right removable region: 128
[2025-12-16 20:03:01] 2025-12-17 00:40:21,585 | INFO     | sum of square deviations: 665852980.6666652
[2025-12-16 20:03:01] 2025-12-17 00:40:21,586 | INFO     | sum of deviations: -39504074418.33333
[2025-12-16 20:03:01] 2025-12-17 00:40:21,586 | INFO     | mean x: 1765928065.6666667
[2025-12-16 20:03:01] 2025-12-17 00:40:21,586 | INFO     | mean y: 2617357.201550388
[2025-12-16 20:03:01] 2025-12-17 00:40:21,586 | INFO     | intersect: 104772522650.2183
[2025-12-16 20:03:01] 2025-12-17 00:40:21,586 | INFO     | chi2: 0.26357328349793036
[2025-12-16 20:03:01] 2025-12-17 00:40:21,586 | INFO     | current chi2=0.26357328349793036 (change=84.76828135052735 %)
[2025-12-16 20:03:01] 2025-12-17 00:40:21,587 | INFO     | sum of square deviations: 591388143.3548378
[2025-12-16 20:03:01] 2025-12-17 00:40:21,587 | INFO     | sum of deviations: -37000273819.09679
[2025-12-16 20:03:01] 2025-12-17 00:40:21,587 | INFO     | mean x: 1765928218.1935484
[2025-12-16 20:03:01] 2025-12-17 00:40:21,587 | INFO     | mean y: 2612130.379032258
[2025-12-16 20:03:01] 2025-12-17 00:40:21,588 | INFO     | intersect: 110488133952.59546
[2025-12-16 20:03:01] 2025-12-17 00:40:21,588 | INFO     | chi2: 0.24711680143167855
[2025-12-16 20:03:01] 2025-12-17 00:40:21,588 | INFO     | current chi2=0.24711680143167855 (change=6.243607792054927 %)
[2025-12-16 20:03:01] 2025-12-17 00:40:21,588 | INFO     | left removable region: 20
[2025-12-16 20:03:01] 2025-12-17 00:40:21,588 | INFO     | sum of square deviations: 390728791.21296275
[2025-12-16 20:03:01] 2025-12-17 00:40:21,589 | INFO     | sum of deviations: -24727717851.26851
[2025-12-16 20:03:01] 2025-12-17 00:40:21,589 | INFO     | mean x: 1765928340.2314816
[2025-12-16 20:03:01] 2025-12-17 00:40:21,589 | INFO     | mean y: 2591891.4907407407
[2025-12-16 20:03:01] 2025-12-17 00:40:21,589 | INFO     | intersect: 111761383986.75386
[2025-12-16 20:03:01] 2025-12-17 00:40:21,589 | INFO     | chi2: 0.22609209366418567
[2025-12-16 20:03:01] 2025-12-17 00:40:21,590 | INFO     | current memory leak: -63.29 B/s (using 108 data points, chi2=0.23)
[2025-12-16 20:03:01] 2025-12-17 00:40:21,590 | INFO     | could have reported an average CPU frequency of 2595 MHz (8 samples)
[2025-12-16 20:03:01] 2025-12-17 00:40:21,590 | INFO     | ..............................
[2025-12-16 20:03:01] 2025-12-17 00:40:21,590 | INFO     | . Timing measurements:
[2025-12-16 20:03:01] 2025-12-17 00:40:21,590 | INFO     | . get job = 0 s
[2025-12-16 20:03:01] 2025-12-17 00:40:21,590 | INFO     | . initial setup = 3 s
[2025-12-16 20:03:01] 2025-12-17 00:40:21,591 | INFO     | . payload setup = 10 s
[2025-12-16 20:03:01] 2025-12-17 00:40:21,591 | INFO     | . stage-in = 0 s
[2025-12-16 20:03:01] 2025-12-17 00:40:21,591 | INFO     | . payload execution = 8157 s
[2025-12-16 20:03:01] 2025-12-17 00:40:21,591 | INFO     | . stage-out = 0 s
[2025-12-16 20:03:01] 2025-12-17 00:40:21,591 | INFO     | . log creation = 0 s
[2025-12-16 20:03:01] 2025-12-17 00:40:21,591 | INFO     | ..............................
[2025-12-16 20:03:01] 2025-12-17 00:40:21,693 | INFO     | 
[2025-12-16 20:03:01] 2025-12-17 00:40:21,694 | INFO     | job summary report
[2025-12-16 20:03:01] 2025-12-17 00:40:21,694 | INFO     | --------------------------------------------------
[2025-12-16 20:03:01] 2025-12-17 00:40:21,694 | INFO     | PanDA job id: 6931597374
[2025-12-16 20:03:01] 2025-12-17 00:40:21,694 | INFO     | task id: 47886831
[2025-12-16 20:03:01] 2025-12-17 00:40:21,694 | INFO     | errors: (none)
[2025-12-16 20:03:01] 2025-12-17 00:40:21,694 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 20:03:01] 2025-12-17 00:40:21,694 | INFO     | pilot state: finished 
[2025-12-16 20:03:01] 2025-12-17 00:40:21,694 | INFO     | transexitcode: 0
[2025-12-16 20:03:01] 2025-12-17 00:40:21,694 | INFO     | exeerrorcode: 0
[2025-12-16 20:03:01] 2025-12-17 00:40:21,694 | INFO     | exeerrordiag: 
[2025-12-16 20:03:01] 2025-12-17 00:40:21,694 | INFO     | exitcode: 0
[2025-12-16 20:03:01] 2025-12-17 00:40:21,694 | INFO     | exitmsg: OK
[2025-12-16 20:03:01] 2025-12-17 00:40:21,695 | INFO     | cpuconsumptiontime: 45661 s
[2025-12-16 20:03:01] 2025-12-17 00:40:21,695 | INFO     | nevents: 400
[2025-12-16 20:03:01] 2025-12-17 00:40:21,695 | INFO     | neventsw: 0
[2025-12-16 20:03:01] 2025-12-17 00:40:21,695 | INFO     | pid: 1656783
[2025-12-16 20:03:01] 2025-12-17 00:40:21,695 | INFO     | pgrp: 1656783
[2025-12-16 20:03:01] 2025-12-17 00:40:21,695 | INFO     | corecount: 8
[2025-12-16 20:03:01] 2025-12-17 00:40:21,695 | INFO     | event service: False
[2025-12-16 20:03:01] 2025-12-17 00:40:21,695 | INFO     | sizes: {0: 2283165, 1: 2283850, 2: 2284049, 13: 2284049, 14: 2284367, 24: 2284395, 8171: 2312309, 8172: 2312308, 8174: 2321362, 8176: 2321418, 8185: 2321612}
[2025-12-16 20:03:01] 2025-12-17 00:40:21,695 | INFO     | --------------------------------------------------
[2025-12-16 20:03:01] 2025-12-17 00:40:21,695 | INFO     | 
[2025-12-16 20:03:01] 2025-12-17 00:40:21,695 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-12-16 20:03:01] 2025-12-17 00:40:21,755 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 20:03:01] 2025-12-17 00:40:21,756 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 20:03:01] 2025-12-17 00:40:21,756 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 20:03:01] 2025-12-17 00:40:21,756 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 20:03:01] 2025-12-17 00:40:21,756 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 20:03:01] 2025-12-17 00:40:21,756 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 20:03:01] 2025-12-17 00:40:21,756 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 20:03:01] 2025-12-17 00:40:21,756 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 20:03:01] 2025-12-17 00:40:21,757 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 20:03:01] 2025-12-17 00:40:21,757 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 20:03:01] 2025-12-17 00:40:21,757 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 20:03:01] 2025-12-17 00:40:21,757 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 20:03:01] 2025-12-17 00:40:21,757 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 20:03:01] 2025-12-17 00:40:21,757 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 20:03:01] 2025-12-17 00:40:21,757 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 20:03:01] 2025-12-17 00:40:21,757 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 20:03:01] 2025-12-17 00:40:21,757 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 20:03:01] 2025-12-17 00:40:21,757 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 20:03:01] 2025-12-17 00:40:21,757 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 20:03:01] 2025-12-17 00:40:21,757 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 20:03:01] 2025-12-17 00:40:21,758 | INFO     | job 6931597374 has completed (purged errors)
[2025-12-16 20:03:01] 2025-12-17 00:40:21,758 | INFO     | overall cleanup function is called
[2025-12-16 20:03:01] 2025-12-17 00:40:22,766 | INFO     | --- collectZombieJob: --- 10, [1656783]
[2025-12-16 20:03:01] 2025-12-17 00:40:22,766 | INFO     | zombie collector waiting for pid 1656783
[2025-12-16 20:03:01] 2025-12-17 00:40:22,767 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 20:03:01] 2025-12-17 00:40:22,767 | INFO     | collected zombie processes
[2025-12-16 20:03:01] 2025-12-17 00:40:22,767 | INFO     | will attempt to kill all subprocesses of pid=1656783
[2025-12-16 20:03:01] 2025-12-17 00:40:23,273 | INFO     | process IDs to be killed: [1656783] (in reverse order)
[2025-12-16 20:03:01] 2025-12-17 00:40:23,436 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 20:03:01] 2025-12-17 00:40:23,436 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 20:03:01] 2025-12-17 00:40:23,454 | INFO     | did not find any defunct processes belonging to 1656783
[2025-12-16 20:03:01] 2025-12-17 00:40:23,471 | INFO     | did not find any defunct processes belonging to 1656783
[2025-12-16 20:03:01] 2025-12-17 00:40:23,471 | INFO     | ready for new job
[2025-12-16 20:03:01] 2025-12-17 00:40:23,471 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 20:03:01] 2025-12-17 00:40:23,473 | INFO     | ***************************************
[2025-12-16 20:03:01] 2025-12-17 00:40:23,473 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 20:03:01] 2025-12-17 00:40:23,473 | INFO     | ***************************************
[2025-12-16 20:03:01] 2025-12-17 00:40:23,473 | INFO     | 
[2025-12-16 20:03:01] 2025-12-17 00:40:23,479 | INFO     | architecture information:
[2025-12-16 20:03:01] 2025-12-17 00:40:23,479 | INFO     | executing command: cat /etc/os-release
[2025-12-16 20:03:01] 2025-12-17 00:40:23,500 | INFO     | cat /etc/os-release:
[2025-12-16 20:03:01] NAME="CentOS Linux"
[2025-12-16 20:03:01] VERSION="7 (Core)"
[2025-12-16 20:03:01] ID="centos"
[2025-12-16 20:03:01] ID_LIKE="rhel fedora"
[2025-12-16 20:03:01] VERSION_ID="7"
[2025-12-16 20:03:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 20:03:01] ANSI_COLOR="0;31"
[2025-12-16 20:03:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 20:03:01] HOME_URL="https://www.centos.org/"
[2025-12-16 20:03:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 20:03:01] 
[2025-12-16 20:03:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 20:03:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 20:03:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 20:03:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 20:03:01] 
[2025-12-16 20:03:01] 2025-12-17 00:40:23,501 | INFO     | ***************************************
[2025-12-16 20:03:01] 2025-12-17 00:40:24,018 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-12-16 20:03:01] 2025-12-17 00:40:24,105 | INFO     | sufficient remaining disk space (74375495680 B)
[2025-12-16 20:03:01] 2025-12-17 00:40:24,105 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 20:03:01] 2025-12-17 00:40:24,105 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 20:03:01] 2025-12-17 00:40:24,105 | INFO     | update_server=False
[2025-12-16 20:03:01] 2025-12-17 00:40:24,105 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 20:03:01] 2025-12-17 00:40:24,106 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 20:03:01] 2025-12-17 00:40:24,106 | INFO     | aborting loop
[2025-12-16 20:03:01] 2025-12-17 00:40:24,106 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 20:03:01] 2025-12-17 00:40:24,110 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 20:03:01] 2025-12-17 00:40:24,441 | INFO     | all data control threads have been joined
[2025-12-16 20:03:01] 2025-12-17 00:40:25,111 | INFO     | [job] retrieve thread has finished
[2025-12-16 20:03:01] 2025-12-17 00:40:25,112 | INFO     | [job] job monitor thread has finished
[2025-12-16 20:03:01] 2025-12-17 00:40:25,313 | INFO     | all payload control threads have been joined
[2025-12-16 20:03:01] 2025-12-17 00:40:25,447 | INFO     | [data] control thread has finished
[2025-12-16 20:03:01] 2025-12-17 00:40:25,580 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 20:03:01] 2025-12-17 00:40:25,636 | INFO     | [payload] failed_post thread has finished
[2025-12-16 20:03:01] 2025-12-17 00:40:25,772 | INFO     | all job control threads have been joined
[2025-12-16 20:03:01] 2025-12-17 00:40:25,828 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 20:03:01] 2025-12-17 00:40:25,927 | INFO     | [payload] validate_post thread has finished
[2025-12-16 20:03:01] 2025-12-17 00:40:26,112 | INFO     | [data] copytool_out thread has finished
[2025-12-16 20:03:01] 2025-12-17 00:40:26,259 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 20:03:01] 2025-12-17 00:40:26,319 | INFO     | [payload] control thread has finished
[2025-12-16 20:03:01] 2025-12-17 00:40:26,451 | INFO     | [data] copytool_in thread has finished
[2025-12-16 20:03:01] 2025-12-17 00:40:26,511 | INFO     | [job] validate thread has finished
[2025-12-16 20:03:01] 2025-12-17 00:40:26,707 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 20:03:01] 2025-12-17 00:40:26,778 | INFO     | [job] control thread has finished
[2025-12-16 20:03:01] 2025-12-17 00:40:27,713 | INFO     | [job] queue monitor thread has finished
[2025-12-16 20:03:01] 2025-12-17 00:40:28,125 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 20:03:01] 2025-12-17 00:40:34,250 | INFO     | job.realtimelogging is not enabled
[2025-12-16 20:03:01] 2025-12-17 00:40:35,256 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 20:03:01] 2025-12-17 00:40:36,814 | INFO     | [monitor] cgroup control has ended
[2025-12-16 20:03:01] 2025-12-17 00:40:38,553 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140509807650624)>', '<ExcThread(monitor, started 140509534197504)>']
[2025-12-16 20:03:01] 2025-12-17 00:40:43,579 | INFO     | all workflow threads have been joined
[2025-12-16 20:03:01] 2025-12-17 00:40:43,579 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 20:03:01] 2025-12-17 00:40:43,579 | INFO     | traces error code: 0
[2025-12-16 20:03:01] 2025-12-17 00:40:43,579 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 20:03:01] 2025-12-17 00:40:54,513 | INFO     | PID=1649333 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 20:03:01] 2025-12-17 00:40:54,514 | INFO     | .. there are 24 such processes running
[2025-12-16 20:03:01] 2025-12-17 00:40:54,515 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 20:03:01] 2025-12-17 00:40:54,515 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 20:03:01] 2025-12-17 00:40:54,515 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 20:03:01] 2025-12-17 00:40:54,515 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 20:03:01] 2025-12-17 00:40:54,515 | INFO     | [monitor] control thread has ended
[2025-12-16 20:03:01] 2025-12-17 00:40:54,689 [wrapper] ==== pilot stdout END ====
[2025-12-16 20:03:01] 2025-12-17 00:40:54,695 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 20:03:01] 2025-12-17 00:40:54,707 [wrapper] pilotpid: 1649333
[2025-12-16 20:03:01] 2025-12-17 00:40:54,717 [wrapper] Pilot exit status: 0
[2025-12-16 20:03:01] 2025-12-17 00:40:54,745 [wrapper] pandaids: 6931597374
[2025-12-16 20:03:01] 2025-12-17 00:40:54,872 [wrapper] cleanup supervisor_pilot 2071875 1649334
[2025-12-16 20:03:01] 2025-12-17 00:40:54,877 [wrapper] Test setup, not cleaning
[2025-12-16 20:03:01] 2025-12-17 00:40:54,880 [wrapper] apfmon messages muted
[2025-12-16 20:03:01] 2025-12-17 00:40:54,884 [wrapper] ==== wrapper stdout END ====
[2025-12-16 20:03:01] 2025-12-17 00:40:54,888 [wrapper] ==== wrapper stderr END ====
[2025-12-16 20:03:01]  *** Error codes and diagnostics ***
[2025-12-16 20:03:01]     "exeErrorCode": 0,
[2025-12-16 20:03:01]     "exeErrorDiag": "",
[2025-12-16 20:03:01]     "pilotErrorCode": 0,
[2025-12-16 20:03:01]     "pilotErrorDiag": "",
[2025-12-16 20:03:01]  *** Listing of results directory ***
[2025-12-16 20:03:01] total 340612
[2025-12-16 20:03:01] -rw-r--r--. 1 boincer umatlas    579449 Dec 16 12:35 pilot3.tar.gz
[2025-12-16 20:03:01] -rw-r--r--. 1 boincer umatlas      5112 Dec 16 12:36 queuedata.json
[2025-12-16 20:03:01] -rwx------. 1 boincer umatlas     36322 Dec 16 12:36 runpilot2-wrapper.sh
[2025-12-16 20:03:01] -rw-r--r--. 1 boincer umatlas       100 Dec 16 17:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 20:03:01] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 16 17:22 run_atlas
[2025-12-16 20:03:01] -rw-r--r--. 1 boincer umatlas       105 Dec 16 17:22 job.xml
[2025-12-16 20:03:01] -rw-r--r--. 2 boincer umatlas 193953459 Dec 16 17:22 EVNT.47886829._000502.pool.root.1
[2025-12-16 20:03:01] -rw-r--r--. 2 boincer umatlas     15847 Dec 16 17:22 start_atlas.sh
[2025-12-16 20:03:01] drwxrwx--x. 2 boincer umatlas      4096 Dec 16 17:22 shared
[2025-12-16 20:03:01] -rw-r--r--. 2 boincer umatlas    592408 Dec 16 17:22 input.tar.gz
[2025-12-16 20:03:01] -rw-r--r--. 1 boincer umatlas         0 Dec 16 17:22 boinc_lockfile
[2025-12-16 20:03:01] -rw-r--r--. 1 boincer umatlas      2539 Dec 16 17:22 pandaJob.out
[2025-12-16 20:03:01] -rw-------. 1 boincer umatlas        57 Dec 16 17:22 setup.sh.local
[2025-12-16 20:03:01] -rw-------. 1 boincer umatlas    987393 Dec 16 17:23 agis_schedconf.cvmfs.json
[2025-12-16 20:03:01] -rw-------. 1 boincer umatlas   1516240 Dec 16 17:23 agis_ddmendpoints.agis.ALL.json
[2025-12-16 20:03:01] drwx------. 5 boincer umatlas      4096 Dec 16 17:23 pilot3
[2025-12-16 20:03:01] -rw-------. 1 boincer umatlas 148004264 Dec 16 19:39 HITS.47886831._014193.pool.root.1
[2025-12-16 20:03:01] -rw-r--r--. 1 boincer umatlas       529 Dec 16 19:39 boinc_task_state.xml
[2025-12-16 20:03:01] -rw-------. 1 boincer umatlas      1055 Dec 16 19:40 memory_monitor_summary.json
[2025-12-16 20:03:01] -rw-------. 1 boincer umatlas    364792 Dec 16 19:40 log.47886831._014193.job.log.tgz.1
[2025-12-16 20:03:01] -rw-------. 1 boincer umatlas      7825 Dec 16 19:40 heartbeat.json
[2025-12-16 20:03:01] -rw-------. 1 boincer umatlas        95 Dec 16 19:40 pilot_heartbeat.json
[2025-12-16 20:03:01] -rw-------. 1 boincer umatlas       823 Dec 16 19:40 pilotlog.txt
[2025-12-16 20:03:01] -rw-------. 1 boincer umatlas   1095568 Dec 16 19:40 log.47886831._014193.job.log.1
[2025-12-16 20:03:01] -rw-------. 1 boincer umatlas       357 Dec 16 19:40 output.list
[2025-12-16 20:03:01] -rw-r--r--. 1 boincer umatlas       620 Dec 16 19:40 runtime_log
[2025-12-16 20:03:01] -rw-------. 1 boincer umatlas   1474560 Dec 16 19:40 result.tar.gz
[2025-12-16 20:03:01] -rw-r--r--. 1 boincer umatlas      9347 Dec 16 19:40 runtime_log.err
[2025-12-16 20:03:01] -rw-------. 1 boincer umatlas       653 Dec 16 19:40 Lx6NDmt9np8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmsPaKDmsKaULn.diag
[2025-12-16 20:03:01] -rw-r--r--. 1 boincer umatlas      6876 Dec 16 20:03 init_data.xml
[2025-12-16 20:03:01] -rw-r--r--. 1 boincer umatlas      8192 Dec 16 20:03 boinc_mmap_file
[2025-12-16 20:03:01] -rw-r--r--. 1 boincer umatlas        27 Dec 16 20:03 wrapper_checkpoint.txt
[2025-12-16 20:03:01] -rw-r--r--. 1 boincer umatlas     21389 Dec 16 20:03 stderr.txt
[2025-12-16 20:03:01] HITS file was successfully produced:
[2025-12-16 20:03:01] -rw-------. 1 boincer umatlas 148004264 Dec 16 19:39 shared/HITS.pool.root.1
[2025-12-16 20:03:01]  *** Contents of shared directory: ***
[2025-12-16 20:03:01] total 335988
[2025-12-16 20:03:01] -rw-r--r--. 2 boincer umatlas 193953459 Dec 16 17:22 ATLAS.root_0
[2025-12-16 20:03:01] -rw-r--r--. 2 boincer umatlas     15847 Dec 16 17:22 start_atlas.sh
[2025-12-16 20:03:01] -rw-r--r--. 2 boincer umatlas    592408 Dec 16 17:22 input.tar.gz
[2025-12-16 20:03:01] -rw-------. 1 boincer umatlas 148004264 Dec 16 19:39 HITS.pool.root.1
[2025-12-16 20:03:01] -rw-------. 1 boincer umatlas   1474560 Dec 16 19:40 result.tar.gz
20:03:03 (1643880): run_atlas exited; CPU time 46034.965835
20:03:03 (1643880): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN