Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:02:03 (5279): wrapper (7.7.26015): starting
17:02:03 (5279): wrapper: running run_atlas (--nthreads 12)
[2025-12-16 17:02:03] Arguments: --nthreads 12
[2025-12-16 17:02:03] Threads: 12
[2025-12-16 17:02:03] Checking for CVMFS
[2025-12-16 17:02:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 17:02:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 17:02:03] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 17:02:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 17:02:03] 2.11.2.0 25590 217737 93604 154088 1 59 14462517 20275201 1 130560 2 111580852 99.963 9132050 27833 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-16 17:02:03] CVMFS is ok
[2025-12-16 17:02:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 17:02:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 17:02:03] Further information can be found at the LHC@home message board.
[2025-12-16 17:02:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 17:02:03] Checking for apptainer binary...
[2025-12-16 17:02:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 17:02:03] Running /usr/bin/apptainer --version
[2025-12-16 17:02:03] apptainer version 1.3.2-1.el7
[2025-12-16 17:02:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 17:02:05] c-205-24.aglt2.org
[2025-12-16 17:02:05] apptainer works
[2025-12-16 17:02:05] Set ATHENA_PROC_NUMBER=12
[2025-12-16 17:02:05] Set ATHENA_CORE_NUMBER=12
[2025-12-16 17:02:05] Starting ATLAS job with PandaID=6929961978
[2025-12-16 17:02:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 18:43:36]  *** The last 200 lines of the pilot log: ***
[2025-12-16 18:43:36]  scope=mc23_13p6TeV
[2025-12-16 18:43:36]  status=None
[2025-12-16 18:43:36]  status_code=0
[2025-12-16 18:43:36]  storage_token=
[2025-12-16 18:43:36]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929961978/log.47898826._002962.job.log.tgz.1
[2025-12-16 18:43:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8f/14/log.47898826._002962.job.log.tgz.1
[2025-12-16 18:43:36]  workdir=None
[2025-12-16 18:43:36] ]
[2025-12-16 18:43:36] 2025-12-16 23:42:48,370 | INFO     | transferring file log.47898826._002962.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929961978/log.47898826._002962.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-16 18:43:36] 2025-12-16 23:42:48,370 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929961978/log.47898826._002962.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898826._002962.job
[2025-12-16 18:43:36] 2025-12-16 23:42:48,393 | INFO     | adding to output.list: log.47898826._002962.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8f/14/log.47898826._002962.job.log.tg
[2025-12-16 18:43:36] 2025-12-16 23:42:48,394 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-16 18:43:36] 2025-12-16 23:42:48,394 | INFO     | summary of transferred files:
[2025-12-16 18:43:36] 2025-12-16 23:42:48,395 | INFO     |  -- lfn=log.47898826._002962.job.log.tgz.1, status_code=0, status=transferred
[2025-12-16 18:43:36] 2025-12-16 23:42:48,395 | INFO     | stage-out finished correctly
[2025-12-16 18:43:36] 2025-12-16 23:42:48,402 | INFO     | monitor loop #446: job 0:6929961978 is in state 'finished'
[2025-12-16 18:43:36] 2025-12-16 23:42:48,402 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 18:43:36] 2025-12-16 23:42:48,485 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-16 18:43:36] 2025-12-16 23:42:49,168 | INFO     | time since job start (6029s) is within the limit (174528.0s)
[2025-12-16 18:43:36] 2025-12-16 23:42:50,910 | INFO     | monitor loop #447: job 0:6929961978 is in state 'finished'
[2025-12-16 18:43:36] 2025-12-16 23:42:50,910 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 18:43:36] 2025-12-16 23:42:51,172 | INFO     | time since job start (6031s) is within the limit (174528.0s)
[2025-12-16 18:43:36] 2025-12-16 23:42:51,178 | INFO     | job 6929961978 has state=finished
[2025-12-16 18:43:36] 2025-12-16 23:42:51,178 | INFO     | preparing for final server update for job 6929961978 in state='finished'
[2025-12-16 18:43:36] 2025-12-16 23:42:51,179 | INFO     | this job has now completed (state=finished)
[2025-12-16 18:43:36] 2025-12-16 23:42:51,180 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-16 18:43:36] 2025-12-16 23:42:51,180 | INFO     | log transfer has been attempted: DONE
[2025-12-16 18:43:36] 2025-12-16 23:42:51,180 | INFO     | job 6929961978 has finished - writing final server update
[2025-12-16 18:43:36] 2025-12-16 23:42:51,181 | INFO     | total number of processed events: 400 (read)
[2025-12-16 18:43:36] 2025-12-16 23:42:51,182 | INFO     | executing command: lscpu
[2025-12-16 18:43:36] 2025-12-16 23:42:51,212 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-16 18:43:36] 2025-12-16 23:42:53,177 | INFO     | time since job start (6033s) is within the limit (174528.0s)
[2025-12-16 18:43:36] 2025-12-16 23:42:53,413 | INFO     | monitor loop #448: job 0:6929961978 is in state 'finished'
[2025-12-16 18:43:36] 2025-12-16 23:42:53,413 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 18:43:36] 2025-12-16 23:42:55,183 | INFO     | time since job start (6035s) is within the limit (174528.0s)
[2025-12-16 18:43:36] 2025-12-16 23:42:55,916 | INFO     | monitor loop #449: job 0:6929961978 is in state 'finished'
[2025-12-16 18:43:36] 2025-12-16 23:42:55,921 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 18:43:36] 2025-12-16 23:42:57,099 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-16 18:43:36] 2025-12-16 23:42:57,104 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-12-16 18:43:36] 2025-12-16 23:42:57,107 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929961978/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 18:43:36] 2025-12-16 23:42:57,108 | INFO     | extracted standard info from prmon json
[2025-12-16 18:43:36] 2025-12-16 23:42:57,108 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 18:43:36] 2025-12-16 23:42:57,109 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 18:43:36] 2025-12-16 23:42:57,109 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 18:43:36] 2025-12-16 23:42:57,109 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 18:43:36] 2025-12-16 23:42:57,111 | INFO     | fitting pss+swap vs Time
[2025-12-16 18:43:36] 2025-12-16 23:42:57,111 | INFO     | sum of square deviations: 241429643.0
[2025-12-16 18:43:36] 2025-12-16 23:42:57,112 | INFO     | sum of deviations: -2203018080.4999995
[2025-12-16 18:43:36] 2025-12-16 23:42:57,112 | INFO     | mean x: 1765925649.5
[2025-12-16 18:43:36] 2025-12-16 23:42:57,112 | INFO     | mean y: 2692504.6195652173
[2025-12-16 18:43:36] 2025-12-16 23:42:57,112 | INFO     | intersect: 16116563553.450157
[2025-12-16 18:43:36] 2025-12-16 23:42:57,112 | INFO     | chi2: 0.05695347001712639
[2025-12-16 18:43:36] 2025-12-16 23:42:57,113 | INFO     | current memory leak: -9.12 B/s (using 92 data points, chi2=0.06)
[2025-12-16 18:43:36] 2025-12-16 23:42:57,113 | INFO     | could have reported an average CPU frequency of 2126 MHz (7 samples)
[2025-12-16 18:43:36] 2025-12-16 23:42:57,113 | INFO     | ..............................
[2025-12-16 18:43:36] 2025-12-16 23:42:57,113 | INFO     | . Timing measurements:
[2025-12-16 18:43:36] 2025-12-16 23:42:57,113 | INFO     | . get job = 0 s
[2025-12-16 18:43:36] 2025-12-16 23:42:57,113 | INFO     | . initial setup = 2 s
[2025-12-16 18:43:36] 2025-12-16 23:42:57,114 | INFO     | . payload setup = 7 s
[2025-12-16 18:43:36] 2025-12-16 23:42:57,114 | INFO     | . stage-in = 0 s
[2025-12-16 18:43:36] 2025-12-16 23:42:57,114 | INFO     | . payload execution = 5999 s
[2025-12-16 18:43:36] 2025-12-16 23:42:57,114 | INFO     | . stage-out = 0 s
[2025-12-16 18:43:36] 2025-12-16 23:42:57,114 | INFO     | . log creation = 0 s
[2025-12-16 18:43:36] 2025-12-16 23:42:57,114 | INFO     | ..............................
[2025-12-16 18:43:36] 2025-12-16 23:42:57,193 | INFO     | time since job start (6037s) is within the limit (174528.0s)
[2025-12-16 18:43:36] 2025-12-16 23:42:57,676 | INFO     | 
[2025-12-16 18:43:36] 2025-12-16 23:42:57,676 | INFO     | job summary report
[2025-12-16 18:43:36] 2025-12-16 23:42:57,676 | INFO     | --------------------------------------------------
[2025-12-16 18:43:36] 2025-12-16 23:42:57,676 | INFO     | PanDA job id: 6929961978
[2025-12-16 18:43:36] 2025-12-16 23:42:57,676 | INFO     | task id: 47898826
[2025-12-16 18:43:36] 2025-12-16 23:42:57,676 | INFO     | errors: (none)
[2025-12-16 18:43:36] 2025-12-16 23:42:57,677 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 18:43:36] 2025-12-16 23:42:57,677 | INFO     | pilot state: finished 
[2025-12-16 18:43:36] 2025-12-16 23:42:57,677 | INFO     | transexitcode: 0
[2025-12-16 18:43:36] 2025-12-16 23:42:57,677 | INFO     | exeerrorcode: 0
[2025-12-16 18:43:36] 2025-12-16 23:42:57,677 | INFO     | exeerrordiag: 
[2025-12-16 18:43:36] 2025-12-16 23:42:57,677 | INFO     | exitcode: 0
[2025-12-16 18:43:36] 2025-12-16 23:42:57,678 | INFO     | exitmsg: OK
[2025-12-16 18:43:36] 2025-12-16 23:42:57,678 | INFO     | cpuconsumptiontime: 66168 s
[2025-12-16 18:43:36] 2025-12-16 23:42:57,678 | INFO     | nevents: 400
[2025-12-16 18:43:36] 2025-12-16 23:42:57,678 | INFO     | neventsw: 0
[2025-12-16 18:43:36] 2025-12-16 23:42:57,678 | INFO     | pid: 15450
[2025-12-16 18:43:36] 2025-12-16 23:42:57,678 | INFO     | pgrp: 15450
[2025-12-16 18:43:36] 2025-12-16 23:42:57,678 | INFO     | corecount: 12
[2025-12-16 18:43:36] 2025-12-16 23:42:57,679 | INFO     | event service: False
[2025-12-16 18:43:36] 2025-12-16 23:42:57,679 | INFO     | sizes: {0: 2283735, 1: 2283990, 6: 2284252, 12: 2284280, 6010: 2311002, 6011: 2311001, 6013: 2320239, 6021: 2320377}
[2025-12-16 18:43:36] 2025-12-16 23:42:57,679 | INFO     | --------------------------------------------------
[2025-12-16 18:43:36] 2025-12-16 23:42:57,679 | INFO     | 
[2025-12-16 18:43:36] 2025-12-16 23:42:57,679 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-16 18:43:36] 2025-12-16 23:42:57,704 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 18:43:36] 2025-12-16 23:42:57,704 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 18:43:36] 2025-12-16 23:42:57,704 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 18:43:36] 2025-12-16 23:42:57,705 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 18:43:36] 2025-12-16 23:42:57,705 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 18:43:36] 2025-12-16 23:42:57,705 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 18:43:36] 2025-12-16 23:42:57,705 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 18:43:36] 2025-12-16 23:42:57,705 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 18:43:36] 2025-12-16 23:42:57,705 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 18:43:36] 2025-12-16 23:42:57,706 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 18:43:36] 2025-12-16 23:42:57,706 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 18:43:36] 2025-12-16 23:42:57,706 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 18:43:36] 2025-12-16 23:42:57,706 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 18:43:36] 2025-12-16 23:42:57,706 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 18:43:36] 2025-12-16 23:42:57,706 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 18:43:36] 2025-12-16 23:42:57,706 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 18:43:36] 2025-12-16 23:42:57,707 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 18:43:36] 2025-12-16 23:42:57,707 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 18:43:36] 2025-12-16 23:42:57,707 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 18:43:36] 2025-12-16 23:42:57,707 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 18:43:36] 2025-12-16 23:42:57,707 | INFO     | job 6929961978 has completed (purged errors)
[2025-12-16 18:43:36] 2025-12-16 23:42:57,708 | INFO     | overall cleanup function is called
[2025-12-16 18:43:36] 2025-12-16 23:42:58,715 | INFO     | --- collectZombieJob: --- 10, [15450]
[2025-12-16 18:43:36] 2025-12-16 23:42:58,716 | INFO     | zombie collector waiting for pid 15450
[2025-12-16 18:43:36] 2025-12-16 23:42:58,716 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 18:43:36] 2025-12-16 23:42:58,716 | INFO     | collected zombie processes
[2025-12-16 18:43:36] 2025-12-16 23:42:58,716 | INFO     | will attempt to kill all subprocesses of pid=15450
[2025-12-16 18:43:36] 2025-12-16 23:42:58,808 | INFO     | process IDs to be killed: [15450] (in reverse order)
[2025-12-16 18:43:36] 2025-12-16 23:42:58,860 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 18:43:36] 2025-12-16 23:42:58,861 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 18:43:36] 2025-12-16 23:42:58,864 | INFO     | did not find any defunct processes belonging to 15450
[2025-12-16 18:43:36] 2025-12-16 23:42:58,868 | INFO     | did not find any defunct processes belonging to 15450
[2025-12-16 18:43:36] 2025-12-16 23:42:58,868 | INFO     | ready for new job
[2025-12-16 18:43:36] 2025-12-16 23:42:58,868 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 18:43:36] 2025-12-16 23:42:58,870 | INFO     | ***************************************
[2025-12-16 18:43:36] 2025-12-16 23:42:58,870 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 18:43:36] 2025-12-16 23:42:58,870 | INFO     | ***************************************
[2025-12-16 18:43:36] 2025-12-16 23:42:58,870 | INFO     | 
[2025-12-16 18:43:36] 2025-12-16 23:42:58,871 | INFO     | architecture information:
[2025-12-16 18:43:36] 2025-12-16 23:42:58,871 | INFO     | executing command: cat /etc/os-release
[2025-12-16 18:43:36] 2025-12-16 23:42:58,886 | INFO     | cat /etc/os-release:
[2025-12-16 18:43:36] NAME="CentOS Linux"
[2025-12-16 18:43:36] VERSION="7 (Core)"
[2025-12-16 18:43:36] ID="centos"
[2025-12-16 18:43:36] ID_LIKE="rhel fedora"
[2025-12-16 18:43:36] VERSION_ID="7"
[2025-12-16 18:43:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 18:43:36] ANSI_COLOR="0;31"
[2025-12-16 18:43:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 18:43:36] HOME_URL="https://www.centos.org/"
[2025-12-16 18:43:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 18:43:36] 
[2025-12-16 18:43:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 18:43:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 18:43:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 18:43:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 18:43:36] 
[2025-12-16 18:43:36] 2025-12-16 23:42:58,887 | INFO     | ***************************************
[2025-12-16 18:43:36] 2025-12-16 23:42:59,390 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-16 18:43:36] 2025-12-16 23:42:59,407 | INFO     | sufficient remaining disk space (29316087808 B)
[2025-12-16 18:43:36] 2025-12-16 23:42:59,407 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 18:43:36] 2025-12-16 23:42:59,407 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 18:43:36] 2025-12-16 23:42:59,407 | INFO     | update_server=False
[2025-12-16 18:43:36] 2025-12-16 23:42:59,408 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 18:43:36] 2025-12-16 23:42:59,408 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 18:43:36] 2025-12-16 23:42:59,408 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 18:43:36] 2025-12-16 23:42:59,430 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 18:43:36] 2025-12-16 23:42:59,430 | INFO     | aborting loop
[2025-12-16 18:43:36] 2025-12-16 23:42:59,568 | INFO     | all data control threads have been joined
[2025-12-16 18:43:36] 2025-12-16 23:42:59,731 | INFO     | all payload control threads have been joined
[2025-12-16 18:43:36] 2025-12-16 23:43:00,120 | INFO     | all job control threads have been joined
[2025-12-16 18:43:36] 2025-12-16 23:43:00,411 | INFO     | [job] retrieve thread has finished
[2025-12-16 18:43:36] 2025-12-16 23:43:00,433 | INFO     | [job] job monitor thread has finished
[2025-12-16 18:43:36] 2025-12-16 23:43:00,571 | INFO     | [data] control thread has finished
[2025-12-16 18:43:36] 2025-12-16 23:43:00,736 | INFO     | [payload] control thread has finished
[2025-12-16 18:43:36] 2025-12-16 23:43:00,842 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 18:43:36] 2025-12-16 23:43:01,052 | INFO     | [data] copytool_in thread has finished
[2025-12-16 18:43:36] 2025-12-16 23:43:01,125 | INFO     | [job] control thread has finished
[2025-12-16 18:43:36] 2025-12-16 23:43:01,344 | INFO     | [payload] failed_post thread has finished
[2025-12-16 18:43:36] 2025-12-16 23:43:01,414 | INFO     | [data] copytool_out thread has finished
[2025-12-16 18:43:36] 2025-12-16 23:43:01,866 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 18:43:36] 2025-12-16 23:43:01,873 | INFO     | [job] validate thread has finished
[2025-12-16 18:43:36] 2025-12-16 23:43:01,880 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 18:43:36] 2025-12-16 23:43:01,937 | INFO     | [payload] validate_post thread has finished
[2025-12-16 18:43:36] 2025-12-16 23:43:02,207 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 18:43:36] 2025-12-16 23:43:03,212 | INFO     | [job] queue monitor thread has finished
[2025-12-16 18:43:36] 2025-12-16 23:43:03,414 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 18:43:36] 2025-12-16 23:43:09,705 | INFO     | job.realtimelogging is not enabled
[2025-12-16 18:43:36] 2025-12-16 23:43:10,710 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 18:43:36] 2025-12-16 23:43:29,100 | INFO     | [monitor] cgroup control has ended
[2025-12-16 18:43:36] 2025-12-16 23:43:30,396 | INFO     | PID=8963 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-16 18:43:36] 2025-12-16 23:43:30,396 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 18:43:36] 2025-12-16 23:43:30,396 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 18:43:36] 2025-12-16 23:43:30,396 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 18:43:36] 2025-12-16 23:43:31,123 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140611459397440)>', '<ExcThread(monitor, started 140610501596928)>']
[2025-12-16 18:43:36] 2025-12-16 23:43:31,399 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 18:43:36] 2025-12-16 23:43:31,399 | INFO     | [monitor] control thread has ended
[2025-12-16 18:43:36] 2025-12-16 23:43:36,145 | INFO     | all workflow threads have been joined
[2025-12-16 18:43:36] 2025-12-16 23:43:36,145 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 18:43:36] 2025-12-16 23:43:36,145 | INFO     | traces error code: 0
[2025-12-16 18:43:36] 2025-12-16 23:43:36,146 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 18:43:36] 2025-12-16 23:43:36,233 [wrapper] ==== pilot stdout END ====
[2025-12-16 18:43:36] 2025-12-16 23:43:36,237 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 18:43:36] 2025-12-16 23:43:36,241 [wrapper] pilotpid: 8963
[2025-12-16 18:43:36] 2025-12-16 23:43:36,245 [wrapper] Pilot exit status: 0
[2025-12-16 18:43:36] 2025-12-16 23:43:36,260 [wrapper] pandaids: 6929961978
[2025-12-16 18:43:36] 2025-12-16 23:43:36,300 [wrapper] cleanup supervisor_pilot 14564 8964
[2025-12-16 18:43:36] 2025-12-16 23:43:36,304 [wrapper] Test setup, not cleaning
[2025-12-16 18:43:36] 2025-12-16 23:43:36,308 [wrapper] apfmon messages muted
[2025-12-16 18:43:36] 2025-12-16 23:43:36,312 [wrapper] ==== wrapper stdout END ====
[2025-12-16 18:43:36] 2025-12-16 23:43:36,316 [wrapper] ==== wrapper stderr END ====
[2025-12-16 18:43:36]  *** Error codes and diagnostics ***
[2025-12-16 18:43:36]     "exeErrorCode": 0,
[2025-12-16 18:43:36]     "exeErrorDiag": "",
[2025-12-16 18:43:36]     "pilotErrorCode": 0,
[2025-12-16 18:43:36]     "pilotErrorDiag": "",
[2025-12-16 18:43:36]  *** Listing of results directory ***
[2025-12-16 18:43:36] total 441380
[2025-12-16 18:43:36] -rw-r--r-- 1 boincer umatlas    579449 Dec 15 13:24 pilot3.tar.gz
[2025-12-16 18:43:36] -rw-r--r-- 1 boincer umatlas      5112 Dec 15 13:25 queuedata.json
[2025-12-16 18:43:36] -rwx------ 1 boincer umatlas     36322 Dec 15 13:25 runpilot2-wrapper.sh
[2025-12-16 18:43:36] -rw-r--r-- 1 boincer umatlas       100 Dec 16 17:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 18:43:36] -rwxr-xr-x 1 boincer umatlas      7986 Dec 16 17:02 run_atlas
[2025-12-16 18:43:36] -rw-r--r-- 1 boincer umatlas       105 Dec 16 17:02 job.xml
[2025-12-16 18:43:36] -rw-r--r-- 2 boincer umatlas 223335913 Dec 16 17:02 EVNT.47898824._000177.pool.root.1
[2025-12-16 18:43:36] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 17:02 start_atlas.sh
[2025-12-16 18:43:36] drwxrwx--x 2 boincer umatlas      4096 Dec 16 17:02 shared
[2025-12-16 18:43:36] -rw-r--r-- 2 boincer umatlas    592387 Dec 16 17:02 input.tar.gz
[2025-12-16 18:43:36] -rw-r--r-- 1 boincer umatlas         0 Dec 16 17:02 boinc_lockfile
[2025-12-16 18:43:36] -rw-r--r-- 1 boincer umatlas      2514 Dec 16 17:02 pandaJob.out
[2025-12-16 18:43:36] -rw------- 1 boincer umatlas        57 Dec 16 17:02 setup.sh.local
[2025-12-16 18:43:36] -rw------- 1 boincer umatlas    987401 Dec 16 17:02 agis_schedconf.cvmfs.json
[2025-12-16 18:43:36] -rw------- 1 boincer umatlas   1516240 Dec 16 17:02 agis_ddmendpoints.agis.ALL.json
[2025-12-16 18:43:36] drwx------ 5 boincer umatlas      4096 Dec 16 17:02 pilot3
[2025-12-16 18:43:36] -rw-r--r-- 1 boincer umatlas      5953 Dec 16 18:39 init_data.xml
[2025-12-16 18:43:36] -rw------- 1 boincer umatlas 222200666 Dec 16 18:42 HITS.47898826._002962.pool.root.1
[2025-12-16 18:43:36] -rw-r--r-- 1 boincer umatlas       529 Dec 16 18:42 boinc_task_state.xml
[2025-12-16 18:43:36] -rw------- 1 boincer umatlas        95 Dec 16 18:42 pilot_heartbeat.json
[2025-12-16 18:43:36] -rw------- 1 boincer umatlas      1047 Dec 16 18:42 memory_monitor_summary.json
[2025-12-16 18:43:36] -rw------- 1 boincer umatlas    404100 Dec 16 18:42 log.47898826._002962.job.log.tgz.1
[2025-12-16 18:43:36] -rw------- 1 boincer umatlas      7844 Dec 16 18:42 heartbeat.json
[2025-12-16 18:43:36] -rw-r--r-- 1 boincer umatlas      8192 Dec 16 18:43 boinc_mmap_file
[2025-12-16 18:43:36] -rw-r--r-- 1 boincer umatlas        27 Dec 16 18:43 wrapper_checkpoint.txt
[2025-12-16 18:43:36] -rw------- 1 boincer umatlas      4817 Dec 16 18:43 pilotlog.txt
[2025-12-16 18:43:36] -rw------- 1 boincer umatlas    856898 Dec 16 18:43 log.47898826._002962.job.log.1
[2025-12-16 18:43:36] -rw------- 1 boincer umatlas       357 Dec 16 18:43 output.list
[2025-12-16 18:43:36] -rw-r--r-- 1 boincer umatlas       620 Dec 16 18:43 runtime_log
[2025-12-16 18:43:36] -rw------- 1 boincer umatlas   1280000 Dec 16 18:43 result.tar.gz
[2025-12-16 18:43:36] -rw------- 1 boincer umatlas       659 Dec 16 18:43 S1bMDmQRSp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm20TKDm1ia9mm.diag
[2025-12-16 18:43:36] -rw-r--r-- 1 boincer umatlas      9344 Dec 16 18:43 runtime_log.err
[2025-12-16 18:43:36] -rw-r--r-- 1 boincer umatlas     21987 Dec 16 18:43 stderr.txt
[2025-12-16 18:43:36] HITS file was successfully produced:
[2025-12-16 18:43:36] -rw------- 1 boincer umatlas 222200666 Dec 16 18:42 shared/HITS.pool.root.1
[2025-12-16 18:43:36]  *** Contents of shared directory: ***
[2025-12-16 18:43:36] total 436948
[2025-12-16 18:43:36] -rw-r--r-- 2 boincer umatlas 223335913 Dec 16 17:02 ATLAS.root_0
[2025-12-16 18:43:36] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 17:02 start_atlas.sh
[2025-12-16 18:43:36] -rw-r--r-- 2 boincer umatlas    592387 Dec 16 17:02 input.tar.gz
[2025-12-16 18:43:36] -rw------- 1 boincer umatlas 222200666 Dec 16 18:42 HITS.pool.root.1
[2025-12-16 18:43:36] -rw------- 1 boincer umatlas   1280000 Dec 16 18:43 result.tar.gz
18:43:37 (5279): run_atlas exited; CPU time 66147.828438
18:43:37 (5279): called boinc_finish(0)

</stderr_txt>
]]>

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