Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:04:00 (26802): wrapper (7.7.26015): starting
17:04:00 (26802): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 17:04:00] Arguments: --nthreads 8
[2025-12-16 17:04:00] Threads: 8
[2025-12-16 17:04:00] Checking for CVMFS
[2025-12-16 17:04:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 17:04:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 17:04:00] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 17:04:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 17:04:00] 2.11.2.0 2830 83844 106312 154088 3 59 15442947 20275201 1 130560 0 21163553 99.824 5594469 30621 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-16 17:04:00] CVMFS is ok
[2025-12-16 17:04:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 17:04:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 17:04:00] Further information can be found at the LHC@home message board.
[2025-12-16 17:04:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 17:04:00] Checking for apptainer binary...
[2025-12-16 17:04:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 17:04:00] Running /usr/bin/apptainer --version
[2025-12-16 17:04:00] apptainer version 1.3.2-1.el7
[2025-12-16 17:04:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 17:04:02] c-204-14.aglt2.org
[2025-12-16 17:04:02] apptainer works
[2025-12-16 17:04:02] Set ATHENA_PROC_NUMBER=8
[2025-12-16 17:04:02] Set ATHENA_CORE_NUMBER=8
[2025-12-16 17:04:02] Starting ATLAS job with PandaID=6930760484
[2025-12-16 17:04:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:11:22 (6572): wrapper (7.7.26015): starting
18:11:22 (6572): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 18:11:22] Arguments: --nthreads 8
[2025-12-16 18:11:22] Threads: 8
[2025-12-16 18:11:22] This job has been restarted, cleaning up previous attempt
[2025-12-16 18:11:22] Checking for CVMFS
[2025-12-16 18:11:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 18:11:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 18:11:22] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 18:11:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 18:11:23] 2.11.2.0 2830 83912 108792 154090 0 18 15549382 20275200 1 130560 0 21230141 99.824 5597332 30623 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-16 18:11:23] CVMFS is ok
[2025-12-16 18:11:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 18:11:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 18:11:23] Further information can be found at the LHC@home message board.
[2025-12-16 18:11:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 18:11:23] Checking for apptainer binary...
[2025-12-16 18:11:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 18:11:23] Running /usr/bin/apptainer --version
[2025-12-16 18:11:23] apptainer version 1.3.2-1.el7
[2025-12-16 18:11:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 18:11:25] c-204-14.aglt2.org
[2025-12-16 18:11:25] apptainer works
[2025-12-16 18:11:25] Set ATHENA_PROC_NUMBER=8
[2025-12-16 18:11:25] Set ATHENA_CORE_NUMBER=8
[2025-12-16 18:11:25] Starting ATLAS job with PandaID=6930760484
[2025-12-16 18:11:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 21:03:19]  *** The last 200 lines of the pilot log: ***
[2025-12-16 21:03:19] 2025-12-17 02:02:45,982 | INFO     | time since job start (10261s) is within the limit (174528.0s)
[2025-12-16 21:03:19] 2025-12-17 02:02:46,411 | INFO     | monitor loop #757: job 0:6930760484 is in state 'finished'
[2025-12-16 21:03:19] 2025-12-17 02:02:46,411 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 21:03:19] 2025-12-17 02:02:47,210 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-16 21:03:19] 2025-12-17 02:02:47,213 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1695.875
[2025-12-16 21:03:19] 2025-12-17 02:02:47,216 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6930760484/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 21:03:19] 2025-12-17 02:02:47,216 | INFO     | extracted standard info from prmon json
[2025-12-16 21:03:19] 2025-12-17 02:02:47,216 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 21:03:19] 2025-12-17 02:02:47,217 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 21:03:19] 2025-12-17 02:02:47,217 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 21:03:19] 2025-12-17 02:02:47,217 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 21:03:19] 2025-12-17 02:02:47,222 | INFO     | fitting pss+swap vs Time
[2025-12-16 21:03:19] 2025-12-17 02:02:47,223 | INFO     | sum of square deviations: 1470248962.0
[2025-12-16 21:03:19] 2025-12-17 02:02:47,224 | INFO     | sum of deviations: 5818975287.500004
[2025-12-16 21:03:19] 2025-12-17 02:02:47,224 | INFO     | mean x: 1765931829.5
[2025-12-16 21:03:19] 2025-12-17 02:02:47,224 | INFO     | mean y: 2498032.0654761903
[2025-12-16 21:03:19] 2025-12-17 02:02:47,225 | INFO     | intersect: -6986735724.162927
[2025-12-16 21:03:19] 2025-12-17 02:02:47,225 | INFO     | chi2: 2.246692314306486
[2025-12-16 21:03:19] 2025-12-17 02:02:47,225 | INFO     | sum of square deviations: 1342841922.0
[2025-12-16 21:03:19] 2025-12-17 02:02:47,226 | INFO     | sum of deviations: 17438870625.000004
[2025-12-16 21:03:19] 2025-12-17 02:02:47,226 | INFO     | mean x: 1765931677.0
[2025-12-16 21:03:19] 2025-12-17 02:02:47,226 | INFO     | mean y: 2511600.981595092
[2025-12-16 21:03:19] 2025-12-17 02:02:47,227 | INFO     | intersect: -22930831142.686707
[2025-12-16 21:03:19] 2025-12-17 02:02:47,227 | INFO     | chi2: 1.3881392588613843
[2025-12-16 21:03:19] 2025-12-17 02:02:47,227 | INFO     | current chi2=1.3881392588613843 (change=38.21409144358611 %)
[2025-12-16 21:03:19] 2025-12-17 02:02:47,227 | INFO     | sum of square deviations: 1223016419.5
[2025-12-16 21:03:19] 2025-12-17 02:02:47,228 | INFO     | sum of deviations: 17078105858.500004
[2025-12-16 21:03:19] 2025-12-17 02:02:47,228 | INFO     | mean x: 1765931524.5
[2025-12-16 21:03:19] 2025-12-17 02:02:47,228 | INFO     | mean y: 2511141.7025316455
[2025-12-16 21:03:19] 2025-12-17 02:02:47,229 | INFO     | intersect: -24656818883.157608
[2025-12-16 21:03:19] 2025-12-17 02:02:47,229 | INFO     | chi2: 1.389233484790403
[2025-12-16 21:03:19] 2025-12-17 02:02:47,229 | INFO     | current chi2=1.389233484790403 (change=-0.07882681237012844 %)
[2025-12-16 21:03:19] 2025-12-17 02:02:47,229 | INFO     | right removable region: 157
[2025-12-16 21:03:19] 2025-12-17 02:02:47,229 | INFO     | sum of square deviations: 1342841922.0
[2025-12-16 21:03:19] 2025-12-17 02:02:47,230 | INFO     | sum of deviations: -18675209658.000004
[2025-12-16 21:03:19] 2025-12-17 02:02:47,230 | INFO     | mean x: 1765931982.0
[2025-12-16 21:03:19] 2025-12-17 02:02:47,230 | INFO     | mean y: 2526969.5153374234
[2025-12-16 21:03:19] 2025-12-17 02:02:47,231 | INFO     | intersect: 24561746833.979393
[2025-12-16 21:03:19] 2025-12-17 02:02:47,231 | INFO     | chi2: 0.9175870916802764
[2025-12-16 21:03:19] 2025-12-17 02:02:47,231 | INFO     | current chi2=0.9175870916802764 (change=59.15831082710944 %)
[2025-12-16 21:03:19] 2025-12-17 02:02:47,231 | INFO     | sum of square deviations: 1223016419.5
[2025-12-16 21:03:19] 2025-12-17 02:02:47,232 | INFO     | sum of deviations: -20553575856.499996
[2025-12-16 21:03:19] 2025-12-17 02:02:47,232 | INFO     | mean x: 1765932134.5
[2025-12-16 21:03:19] 2025-12-17 02:02:47,232 | INFO     | mean y: 2529308.006329114
[2025-12-16 21:03:19] 2025-12-17 02:02:47,233 | INFO     | intersect: 29680152196.107468
[2025-12-16 21:03:19] 2025-12-17 02:02:47,233 | INFO     | chi2: 0.8956233081602185
[2025-12-16 21:03:19] 2025-12-17 02:02:47,233 | INFO     | current chi2=0.8956233081602185 (change=2.3936456516446887 %)
[2025-12-16 21:03:19] 2025-12-17 02:02:47,233 | INFO     | left removable region: 20
[2025-12-16 21:03:19] 2025-12-17 02:02:47,233 | INFO     | sum of square deviations: 797291228.0
[2025-12-16 21:03:19] 2025-12-17 02:02:47,234 | INFO     | sum of deviations: -7412549322.000001
[2025-12-16 21:03:19] 2025-12-17 02:02:47,234 | INFO     | mean x: 1765932104.0
[2025-12-16 21:03:19] 2025-12-17 02:02:47,234 | INFO     | mean y: 2544010.0437956206
[2025-12-16 21:03:19] 2025-12-17 02:02:47,234 | INFO     | intersect: 16420708866.867275
[2025-12-16 21:03:19] 2025-12-17 02:02:47,235 | INFO     | chi2: 0.009307007491876995
[2025-12-16 21:03:19] 2025-12-17 02:02:47,235 | INFO     | current memory leak: -9.30 B/s (using 137 data points, chi2=0.01)
[2025-12-16 21:03:19] 2025-12-17 02:02:47,235 | INFO     | could have reported an average CPU frequency of 2017 MHz (9 samples)
[2025-12-16 21:03:19] 2025-12-17 02:02:47,235 | INFO     | ..............................
[2025-12-16 21:03:19] 2025-12-17 02:02:47,236 | INFO     | . Timing measurements:
[2025-12-16 21:03:19] 2025-12-17 02:02:47,236 | INFO     | . get job = 0 s
[2025-12-16 21:03:19] 2025-12-17 02:02:47,236 | INFO     | . initial setup = 1 s
[2025-12-16 21:03:19] 2025-12-17 02:02:47,236 | INFO     | . payload setup = 8 s
[2025-12-16 21:03:19] 2025-12-17 02:02:47,236 | INFO     | . stage-in = 0 s
[2025-12-16 21:03:19] 2025-12-17 02:02:47,236 | INFO     | . payload execution = 10219 s
[2025-12-16 21:03:19] 2025-12-17 02:02:47,236 | INFO     | . stage-out = 2 s
[2025-12-16 21:03:19] 2025-12-17 02:02:47,236 | INFO     | . log creation = 0 s
[2025-12-16 21:03:19] 2025-12-17 02:02:47,236 | INFO     | ..............................
[2025-12-16 21:03:19] 2025-12-17 02:02:47,330 | INFO     | 
[2025-12-16 21:03:19] 2025-12-17 02:02:47,330 | INFO     | job summary report
[2025-12-16 21:03:19] 2025-12-17 02:02:47,331 | INFO     | --------------------------------------------------
[2025-12-16 21:03:19] 2025-12-17 02:02:47,331 | INFO     | PanDA job id: 6930760484
[2025-12-16 21:03:19] 2025-12-17 02:02:47,331 | INFO     | task id: 47898782
[2025-12-16 21:03:19] 2025-12-17 02:02:47,331 | INFO     | errors: (none)
[2025-12-16 21:03:19] 2025-12-17 02:02:47,331 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 21:03:19] 2025-12-17 02:02:47,332 | INFO     | pilot state: finished 
[2025-12-16 21:03:19] 2025-12-17 02:02:47,332 | INFO     | transexitcode: 0
[2025-12-16 21:03:19] 2025-12-17 02:02:47,332 | INFO     | exeerrorcode: 0
[2025-12-16 21:03:19] 2025-12-17 02:02:47,332 | INFO     | exeerrordiag: 
[2025-12-16 21:03:19] 2025-12-17 02:02:47,332 | INFO     | exitcode: 0
[2025-12-16 21:03:19] 2025-12-17 02:02:47,332 | INFO     | exitmsg: OK
[2025-12-16 21:03:19] 2025-12-17 02:02:47,333 | INFO     | cpuconsumptiontime: 77091 s
[2025-12-16 21:03:19] 2025-12-17 02:02:47,333 | INFO     | nevents: 400
[2025-12-16 21:03:19] 2025-12-17 02:02:47,333 | INFO     | neventsw: 0
[2025-12-16 21:03:19] 2025-12-17 02:02:47,333 | INFO     | pid: 17136
[2025-12-16 21:03:19] 2025-12-17 02:02:47,333 | INFO     | pgrp: 17136
[2025-12-16 21:03:19] 2025-12-17 02:02:47,334 | INFO     | corecount: 8
[2025-12-16 21:03:19] 2025-12-17 02:02:47,334 | INFO     | event service: False
[2025-12-16 21:03:19] 2025-12-17 02:02:47,334 | INFO     | sizes: {0: 2283978, 6: 2284240, 11: 2284268, 10232: 2312942, 10235: 2321940, 10238: 2321996, 10245: 2322382}
[2025-12-16 21:03:19] 2025-12-17 02:02:47,334 | INFO     | --------------------------------------------------
[2025-12-16 21:03:19] 2025-12-17 02:02:47,334 | INFO     | 
[2025-12-16 21:03:19] 2025-12-17 02:02:47,335 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-16 21:03:19] 2025-12-17 02:02:47,363 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 21:03:19] 2025-12-17 02:02:47,364 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 21:03:19] 2025-12-17 02:02:47,364 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 21:03:19] 2025-12-17 02:02:47,364 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 21:03:19] 2025-12-17 02:02:47,364 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 21:03:19] 2025-12-17 02:02:47,364 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 21:03:19] 2025-12-17 02:02:47,365 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 21:03:19] 2025-12-17 02:02:47,365 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 21:03:19] 2025-12-17 02:02:47,365 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 21:03:19] 2025-12-17 02:02:47,365 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 21:03:19] 2025-12-17 02:02:47,366 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 21:03:19] 2025-12-17 02:02:47,366 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 21:03:19] 2025-12-17 02:02:47,366 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 21:03:19] 2025-12-17 02:02:47,366 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 21:03:19] 2025-12-17 02:02:47,366 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 21:03:19] 2025-12-17 02:02:47,367 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 21:03:19] 2025-12-17 02:02:47,367 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 21:03:19] 2025-12-17 02:02:47,367 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 21:03:19] 2025-12-17 02:02:47,367 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 21:03:19] 2025-12-17 02:02:47,368 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 21:03:19] 2025-12-17 02:02:47,368 | INFO     | job 6930760484 has completed (purged errors)
[2025-12-16 21:03:19] 2025-12-17 02:02:47,368 | INFO     | overall cleanup function is called
[2025-12-16 21:03:19] 2025-12-17 02:02:48,377 | INFO     | --- collectZombieJob: --- 10, [17136]
[2025-12-16 21:03:19] 2025-12-17 02:02:48,377 | INFO     | zombie collector waiting for pid 17136
[2025-12-16 21:03:19] 2025-12-17 02:02:48,377 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 21:03:19] 2025-12-17 02:02:48,377 | INFO     | collected zombie processes
[2025-12-16 21:03:19] 2025-12-17 02:02:48,378 | INFO     | will attempt to kill all subprocesses of pid=17136
[2025-12-16 21:03:19] 2025-12-17 02:02:48,472 | INFO     | process IDs to be killed: [17136] (in reverse order)
[2025-12-16 21:03:19] 2025-12-17 02:02:48,532 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 21:03:19] 2025-12-17 02:02:48,532 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 21:03:19] 2025-12-17 02:02:48,538 | INFO     | did not find any defunct processes belonging to 17136
[2025-12-16 21:03:19] 2025-12-17 02:02:48,542 | INFO     | did not find any defunct processes belonging to 17136
[2025-12-16 21:03:19] 2025-12-17 02:02:48,542 | INFO     | ready for new job
[2025-12-16 21:03:19] 2025-12-17 02:02:48,542 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 21:03:19] 2025-12-17 02:02:48,545 | INFO     | ***************************************
[2025-12-16 21:03:19] 2025-12-17 02:02:48,545 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 21:03:19] 2025-12-17 02:02:48,545 | INFO     | ***************************************
[2025-12-16 21:03:19] 2025-12-17 02:02:48,545 | INFO     | 
[2025-12-16 21:03:19] 2025-12-17 02:02:48,546 | INFO     | architecture information:
[2025-12-16 21:03:19] 2025-12-17 02:02:48,546 | INFO     | executing command: cat /etc/os-release
[2025-12-16 21:03:19] 2025-12-17 02:02:48,565 | INFO     | cat /etc/os-release:
[2025-12-16 21:03:19] NAME="CentOS Linux"
[2025-12-16 21:03:19] VERSION="7 (Core)"
[2025-12-16 21:03:19] ID="centos"
[2025-12-16 21:03:19] ID_LIKE="rhel fedora"
[2025-12-16 21:03:19] VERSION_ID="7"
[2025-12-16 21:03:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 21:03:19] ANSI_COLOR="0;31"
[2025-12-16 21:03:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 21:03:19] HOME_URL="https://www.centos.org/"
[2025-12-16 21:03:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 21:03:19] 
[2025-12-16 21:03:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 21:03:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 21:03:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 21:03:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 21:03:19] 
[2025-12-16 21:03:19] 2025-12-17 02:02:48,566 | INFO     | ***************************************
[2025-12-16 21:03:19] 2025-12-17 02:02:49,067 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-16 21:03:19] 2025-12-17 02:02:49,093 | INFO     | sufficient remaining disk space (18572378112 B)
[2025-12-16 21:03:19] 2025-12-17 02:02:49,093 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 21:03:19] 2025-12-17 02:02:49,094 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 21:03:19] 2025-12-17 02:02:49,094 | INFO     | update_server=False
[2025-12-16 21:03:19] 2025-12-17 02:02:49,094 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 21:03:19] 2025-12-17 02:02:49,095 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 21:03:19] 2025-12-17 02:02:49,597 | INFO     | all data control threads have been joined
[2025-12-16 21:03:19] 2025-12-17 02:02:49,610 | INFO     | all job control threads have been joined
[2025-12-16 21:03:19] 2025-12-17 02:02:49,865 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 21:03:19] 2025-12-17 02:02:49,919 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 21:03:19] 2025-12-17 02:02:49,920 | INFO     | aborting loop
[2025-12-16 21:03:19] 2025-12-17 02:02:50,097 | INFO     | [job] queue monitor thread has finished
[2025-12-16 21:03:19] 2025-12-17 02:02:50,100 | INFO     | [job] retrieve thread has finished
[2025-12-16 21:03:19] 2025-12-17 02:02:50,130 | INFO     | all payload control threads have been joined
[2025-12-16 21:03:19] 2025-12-17 02:02:50,225 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 21:03:19] 2025-12-17 02:02:50,231 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 21:03:19] 2025-12-17 02:02:50,231 | INFO     | [data] copytool_in thread has finished
[2025-12-16 21:03:19] 2025-12-17 02:02:50,258 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 21:03:19] 2025-12-17 02:02:50,592 | INFO     | [payload] failed_post thread has finished
[2025-12-16 21:03:19] 2025-12-17 02:02:50,603 | INFO     | [data] control thread has finished
[2025-12-16 21:03:19] 2025-12-17 02:02:50,616 | INFO     | [job] control thread has finished
[2025-12-16 21:03:19] 2025-12-17 02:02:50,729 | INFO     | [payload] validate_post thread has finished
[2025-12-16 21:03:19] 2025-12-17 02:02:50,765 | INFO     | [job] validate thread has finished
[2025-12-16 21:03:19] 2025-12-17 02:02:50,925 | INFO     | [job] job monitor thread has finished
[2025-12-16 21:03:19] 2025-12-17 02:02:51,135 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 21:03:19] 2025-12-17 02:02:51,136 | INFO     | [payload] control thread has finished
[2025-12-16 21:03:19] 2025-12-17 02:02:51,324 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 21:03:19] 2025-12-17 02:02:51,871 | INFO     | [data] copytool_out thread has finished
[2025-12-16 21:03:19] 2025-12-17 02:02:54,231 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 21:03:19] 2025-12-17 02:03:00,579 | INFO     | [monitor] cgroup control has ended
[2025-12-16 21:03:19] 2025-12-17 02:03:00,644 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140351996217152)>', '<ExcThread(monitor, started 140351696246528)>']
[2025-12-16 21:03:19] 2025-12-17 02:03:05,648 | INFO     | all workflow threads have been joined
[2025-12-16 21:03:19] 2025-12-17 02:03:05,652 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 21:03:19] 2025-12-17 02:03:05,652 | INFO     | traces error code: 0
[2025-12-16 21:03:19] 2025-12-17 02:03:05,653 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 21:03:19] 2025-12-17 02:03:19,203 | INFO     | PID=10714 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 21:03:19] 2025-12-17 02:03:19,203 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 21:03:19] 2025-12-17 02:03:19,204 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 21:03:19] 2025-12-17 02:03:19,204 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 21:03:19] 2025-12-17 02:03:19,204 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 21:03:19] 2025-12-17 02:03:19,204 | INFO     | [monitor] control thread has ended
[2025-12-16 21:03:19] 2025-12-17 02:03:19,309 [wrapper] ==== pilot stdout END ====
[2025-12-16 21:03:19] 2025-12-17 02:03:19,314 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 21:03:19] 2025-12-17 02:03:19,319 [wrapper] pilotpid: 10714
[2025-12-16 21:03:19] 2025-12-17 02:03:19,324 [wrapper] Pilot exit status: 0
[2025-12-16 21:03:19] 2025-12-17 02:03:19,342 [wrapper] pandaids: 6930760484 6930760484
[2025-12-16 21:03:19] 2025-12-17 02:03:19,387 [wrapper] cleanup supervisor_pilot  4793 10715
[2025-12-16 21:03:19] 2025-12-17 02:03:19,393 [wrapper] Test setup, not cleaning
[2025-12-16 21:03:19] 2025-12-17 02:03:19,397 [wrapper] apfmon messages muted
[2025-12-16 21:03:19] 2025-12-17 02:03:19,403 [wrapper] ==== wrapper stdout END ====
[2025-12-16 21:03:19] 2025-12-17 02:03:19,407 [wrapper] ==== wrapper stderr END ====
[2025-12-16 21:03:19]  *** Error codes and diagnostics ***
[2025-12-16 21:03:19]     "exeErrorCode": 0,
[2025-12-16 21:03:19]     "exeErrorDiag": "",
[2025-12-16 21:03:19]     "pilotErrorCode": 0,
[2025-12-16 21:03:19]     "pilotErrorDiag": "",
[2025-12-16 21:03:19]  *** Listing of results directory ***
[2025-12-16 21:03:19] total 631184
[2025-12-16 21:03:19] drwx------ 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2025-12-16 21:03:19] -rw-r--r-- 1 boincer umatlas    579449 Dec 16 01:04 pilot3.tar.gz
[2025-12-16 21:03:19] -rw-r--r-- 1 boincer umatlas      5112 Dec 16 01:05 queuedata.json
[2025-12-16 21:03:19] -rwx------ 1 boincer umatlas     36322 Dec 16 01:05 runpilot2-wrapper.sh
[2025-12-16 21:03:19] -rw-r--r-- 1 boincer umatlas       100 Dec 16 17:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 21:03:19] -rwxr-xr-x 1 boincer umatlas      7986 Dec 16 17:03 run_atlas
[2025-12-16 21:03:19] -rw-r--r-- 1 boincer umatlas       105 Dec 16 17:03 job.xml
[2025-12-16 21:03:19] -rw-r--r-- 3 boincer umatlas 217426372 Dec 16 17:04 EVNT.47898779._000193.pool.root.1
[2025-12-16 21:03:19] -rw-r--r-- 3 boincer umatlas 217426372 Dec 16 17:04 ATLAS.root_0
[2025-12-16 21:03:19] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 17:04 start_atlas.sh
[2025-12-16 21:03:19] drwxrwx--x 2 boincer umatlas      4096 Dec 16 17:04 shared
[2025-12-16 21:03:19] -rw-r--r-- 2 boincer umatlas    592388 Dec 16 17:04 input.tar.gz
[2025-12-16 21:03:19] -rw-r--r-- 1 boincer umatlas         0 Dec 16 17:04 boinc_lockfile
[2025-12-16 21:03:19] -rw-r--r-- 1 boincer umatlas      2521 Dec 16 18:11 pandaJob.out
[2025-12-16 21:03:19] -rw------- 1 boincer umatlas        57 Dec 16 18:11 setup.sh.local
[2025-12-16 21:03:19] -rw------- 1 boincer umatlas    987393 Dec 16 18:11 agis_schedconf.cvmfs.json
[2025-12-16 21:03:19] -rw-r--r-- 1 boincer umatlas      5910 Dec 16 20:56 init_data.xml
[2025-12-16 21:03:19] -rw------- 1 boincer umatlas 203937078 Dec 16 21:01 HITS.47898782._004732.pool.root.1
[2025-12-16 21:03:19] -rw-r--r-- 1 boincer umatlas       531 Dec 16 21:02 boinc_task_state.xml
[2025-12-16 21:03:19] -rw------- 1 boincer umatlas      1049 Dec 16 21:02 memory_monitor_summary.json
[2025-12-16 21:03:19] -rw------- 1 boincer umatlas   1516240 Dec 16 21:02 agis_ddmendpoints.agis.ALL.json
[2025-12-16 21:03:19] -rw------- 1 boincer umatlas    392653 Dec 16 21:02 log.47898782._004732.job.log.tgz.1
[2025-12-16 21:03:19] -rw------- 1 boincer umatlas      7847 Dec 16 21:02 heartbeat.json
[2025-12-16 21:03:19] -rw-r--r-- 1 boincer umatlas      8192 Dec 16 21:03 boinc_mmap_file
[2025-12-16 21:03:19] -rw-r--r-- 1 boincer umatlas        29 Dec 16 21:03 wrapper_checkpoint.txt
[2025-12-16 21:03:19] -rw------- 1 boincer umatlas        96 Dec 16 21:03 pilot_heartbeat.json
[2025-12-16 21:03:19] -rw------- 1 boincer umatlas       745 Dec 16 21:03 pilotlog.txt
[2025-12-16 21:03:19] -rw------- 1 boincer umatlas   1424293 Dec 16 21:03 log.47898782._004732.job.log.1
[2025-12-16 21:03:19] -rw------- 1 boincer umatlas       357 Dec 16 21:03 output.list
[2025-12-16 21:03:19] -rw-r--r-- 1 boincer umatlas       620 Dec 16 21:03 runtime_log
[2025-12-16 21:03:19] -rw------- 1 boincer umatlas   1832960 Dec 16 21:03 result.tar.gz
[2025-12-16 21:03:19] -rw------- 1 boincer umatlas       788 Dec 16 21:03 zwsNDm5Mdp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRZZKDmAxXrWn.diag
[2025-12-16 21:03:19] -rw-r--r-- 1 boincer umatlas      9428 Dec 16 21:03 runtime_log.err
[2025-12-16 21:03:19] -rw-r--r-- 1 boincer umatlas     23251 Dec 16 21:03 stderr.txt
[2025-12-16 21:03:19] HITS file was successfully produced:
[2025-12-16 21:03:19] -rw------- 1 boincer umatlas 203937078 Dec 16 21:01 shared/HITS.pool.root.1
[2025-12-16 21:03:19]  *** Contents of shared directory: ***
[2025-12-16 21:03:19] total 413884
[2025-12-16 21:03:19] -rw-r--r-- 3 boincer umatlas 217426372 Dec 16 17:04 ATLAS.root_0
[2025-12-16 21:03:19] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 17:04 start_atlas.sh
[2025-12-16 21:03:19] -rw-r--r-- 2 boincer umatlas    592388 Dec 16 17:04 input.tar.gz
[2025-12-16 21:03:19] -rw------- 1 boincer umatlas 203937078 Dec 16 21:01 HITS.pool.root.1
[2025-12-16 21:03:19] -rw------- 1 boincer umatlas   1832960 Dec 16 21:03 result.tar.gz
21:03:21 (6572): run_atlas exited; CPU time 77041.744467
21:03:21 (6572): called boinc_finish(0)

</stderr_txt>
]]>

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