Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:39:33 (24656): wrapper (7.7.26015): starting
16:39:33 (24656): wrapper: running run_atlas (--nthreads 12)
[2025-12-16 16:39:33] Arguments: --nthreads 12
[2025-12-16 16:39:33] Threads: 12
[2025-12-16 16:39:33] Checking for CVMFS
[2025-12-16 16:39:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 16:39:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 16:39:33] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 16:39:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 16:39:34] 2.11.2.0 2984 316987 92184 154088 0 59 18103159 20275200 1 130560 1 141773711 99.974 17775919 14944 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-16 16:39:34] CVMFS is ok
[2025-12-16 16:39:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 16:39:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 16:39:34] Further information can be found at the LHC@home message board.
[2025-12-16 16:39:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 16:39:34] Checking for apptainer binary...
[2025-12-16 16:39:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 16:39:34] Running /usr/bin/apptainer --version
[2025-12-16 16:39:34] apptainer version 1.3.2-1.el7
[2025-12-16 16:39:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 16:39:35] c-205-26.aglt2.org
[2025-12-16 16:39:35] apptainer works
[2025-12-16 16:39:35] Set ATHENA_PROC_NUMBER=12
[2025-12-16 16:39:35] Set ATHENA_CORE_NUMBER=12
[2025-12-16 16:39:35] Starting ATLAS job with PandaID=6930759657
[2025-12-16 16:39:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 18:17:10]  *** The last 200 lines of the pilot log: ***
[2025-12-16 18:17:10]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-16 18:17:10]  replicas=None
[2025-12-16 18:17:10]  scope=mc23_13p6TeV
[2025-12-16 18:17:10]  status=None
[2025-12-16 18:17:10]  status_code=0
[2025-12-16 18:17:10]  storage_token=
[2025-12-16 18:17:10]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6930759657/log.47898782._004569.job.log.tgz.1
[2025-12-16 18:17:10]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7f/f9/log.47898782._004569.job.log.tgz.1
[2025-12-16 18:17:10]  workdir=None
[2025-12-16 18:17:10] ]
[2025-12-16 18:17:10] 2025-12-16 23:16:30,808 | INFO     | transferring file log.47898782._004569.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6930759657/log.47898782._004569.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-16 18:17:10] 2025-12-16 23:16:30,808 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6930759657/log.47898782._004569.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898782._004569.job
[2025-12-16 18:17:10] 2025-12-16 23:16:30,831 | INFO     | adding to output.list: log.47898782._004569.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7f/f9/log.47898782._004569.job.log.tg
[2025-12-16 18:17:10] 2025-12-16 23:16:30,832 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-16 18:17:10] 2025-12-16 23:16:30,832 | INFO     | summary of transferred files:
[2025-12-16 18:17:10] 2025-12-16 23:16:30,832 | INFO     |  -- lfn=log.47898782._004569.job.log.tgz.1, status_code=0, status=transferred
[2025-12-16 18:17:10] 2025-12-16 23:16:30,832 | INFO     | stage-out finished correctly
[2025-12-16 18:17:10] 2025-12-16 23:16:30,941 | INFO     | time since job start (5800s) is within the limit (174528.0s)
[2025-12-16 18:17:10] 2025-12-16 23:16:31,747 | INFO     | monitor loop #428: job 0:6930759657 is in state 'finished'
[2025-12-16 18:17:10] 2025-12-16 23:16:31,747 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 18:17:10] 2025-12-16 23:16:32,946 | INFO     | time since job start (5802s) is within the limit (174528.0s)
[2025-12-16 18:17:10] 2025-12-16 23:16:32,988 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-16 18:17:10] 2025-12-16 23:16:33,067 | INFO     | job 6930759657 has state=finished
[2025-12-16 18:17:10] 2025-12-16 23:16:33,067 | INFO     | preparing for final server update for job 6930759657 in state='finished'
[2025-12-16 18:17:10] 2025-12-16 23:16:33,067 | INFO     | this job has now completed (state=finished)
[2025-12-16 18:17:10] 2025-12-16 23:16:33,068 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-16 18:17:10] 2025-12-16 23:16:33,068 | INFO     | log transfer has been attempted: DONE
[2025-12-16 18:17:10] 2025-12-16 23:16:33,068 | INFO     | job 6930759657 has finished - writing final server update
[2025-12-16 18:17:10] 2025-12-16 23:16:33,068 | INFO     | total number of processed events: 400 (read)
[2025-12-16 18:17:10] 2025-12-16 23:16:33,069 | INFO     | executing command: lscpu
[2025-12-16 18:17:10] 2025-12-16 23:16:33,095 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-16 18:17:10] 2025-12-16 23:16:34,251 | INFO     | monitor loop #429: job 0:6930759657 is in state 'finished'
[2025-12-16 18:17:10] 2025-12-16 23:16:34,251 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 18:17:10] 2025-12-16 23:16:34,952 | INFO     | time since job start (5804s) is within the limit (174528.0s)
[2025-12-16 18:17:10] 2025-12-16 23:16:36,754 | INFO     | monitor loop #430: job 0:6930759657 is in state 'finished'
[2025-12-16 18:17:10] 2025-12-16 23:16:36,755 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 18:17:10] 2025-12-16 23:16:36,957 | INFO     | time since job start (5806s) is within the limit (174528.0s)
[2025-12-16 18:17:10] 2025-12-16 23:16:37,775 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-16 18:17:10] 2025-12-16 23:16:37,777 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-12-16 18:17:10] 2025-12-16 23:16:37,779 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6930759657/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 18:17:10] 2025-12-16 23:16:37,780 | INFO     | extracted standard info from prmon json
[2025-12-16 18:17:10] 2025-12-16 23:16:37,780 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 18:17:10] 2025-12-16 23:16:37,780 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 18:17:10] 2025-12-16 23:16:37,780 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 18:17:10] 2025-12-16 23:16:37,780 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 18:17:10] 2025-12-16 23:16:37,782 | INFO     | fitting pss+swap vs Time
[2025-12-16 18:17:10] 2025-12-16 23:16:37,783 | INFO     | sum of square deviations: 211285822.0
[2025-12-16 18:17:10] 2025-12-16 23:16:37,783 | INFO     | sum of deviations: -12091417590.500002
[2025-12-16 18:17:10] 2025-12-16 23:16:37,783 | INFO     | mean x: 1765924177.5
[2025-12-16 18:17:10] 2025-12-16 23:16:37,783 | INFO     | mean y: 2760812.5113636362
[2025-12-16 18:17:10] 2025-12-16 23:16:37,783 | INFO     | intersect: 101062673215.49667
[2025-12-16 18:17:10] 2025-12-16 23:16:37,784 | INFO     | chi2: 0.09828462906197666
[2025-12-16 18:17:10] 2025-12-16 23:16:37,784 | INFO     | current memory leak: -57.23 B/s (using 88 data points, chi2=0.10)
[2025-12-16 18:17:10] 2025-12-16 23:16:37,784 | INFO     | could have reported an average CPU frequency of 2125 MHz (7 samples)
[2025-12-16 18:17:10] 2025-12-16 23:16:37,784 | INFO     | ..............................
[2025-12-16 18:17:10] 2025-12-16 23:16:37,784 | INFO     | . Timing measurements:
[2025-12-16 18:17:10] 2025-12-16 23:16:37,784 | INFO     | . get job = 0 s
[2025-12-16 18:17:10] 2025-12-16 23:16:37,785 | INFO     | . initial setup = 2 s
[2025-12-16 18:17:10] 2025-12-16 23:16:37,785 | INFO     | . payload setup = 7 s
[2025-12-16 18:17:10] 2025-12-16 23:16:37,785 | INFO     | . stage-in = 0 s
[2025-12-16 18:17:10] 2025-12-16 23:16:37,785 | INFO     | . payload execution = 5771 s
[2025-12-16 18:17:10] 2025-12-16 23:16:37,785 | INFO     | . stage-out = 0 s
[2025-12-16 18:17:10] 2025-12-16 23:16:37,785 | INFO     | . log creation = 0 s
[2025-12-16 18:17:10] 2025-12-16 23:16:37,785 | INFO     | ..............................
[2025-12-16 18:17:10] 2025-12-16 23:16:37,967 | INFO     | 
[2025-12-16 18:17:10] 2025-12-16 23:16:37,968 | INFO     | job summary report
[2025-12-16 18:17:10] 2025-12-16 23:16:37,980 | INFO     | --------------------------------------------------
[2025-12-16 18:17:10] 2025-12-16 23:16:37,980 | INFO     | PanDA job id: 6930759657
[2025-12-16 18:17:10] 2025-12-16 23:16:37,981 | INFO     | task id: 47898782
[2025-12-16 18:17:10] 2025-12-16 23:16:37,981 | INFO     | errors: (none)
[2025-12-16 18:17:10] 2025-12-16 23:16:37,981 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 18:17:10] 2025-12-16 23:16:37,981 | INFO     | pilot state: finished 
[2025-12-16 18:17:10] 2025-12-16 23:16:37,981 | INFO     | transexitcode: 0
[2025-12-16 18:17:10] 2025-12-16 23:16:37,981 | INFO     | exeerrorcode: 0
[2025-12-16 18:17:10] 2025-12-16 23:16:37,982 | INFO     | exeerrordiag: 
[2025-12-16 18:17:10] 2025-12-16 23:16:37,982 | INFO     | exitcode: 0
[2025-12-16 18:17:10] 2025-12-16 23:16:37,982 | INFO     | exitmsg: OK
[2025-12-16 18:17:10] 2025-12-16 23:16:37,982 | INFO     | cpuconsumptiontime: 63782 s
[2025-12-16 18:17:10] 2025-12-16 23:16:37,982 | INFO     | nevents: 400
[2025-12-16 18:17:10] 2025-12-16 23:16:37,982 | INFO     | neventsw: 0
[2025-12-16 18:17:10] 2025-12-16 23:16:37,983 | INFO     | pid: 2534
[2025-12-16 18:17:10] 2025-12-16 23:16:37,983 | INFO     | pgrp: 2534
[2025-12-16 18:17:10] 2025-12-16 23:16:37,983 | INFO     | corecount: 12
[2025-12-16 18:17:10] 2025-12-16 23:16:37,983 | INFO     | event service: False
[2025-12-16 18:17:10] 2025-12-16 23:16:37,983 | INFO     | sizes: {0: 2283980, 5: 2284242, 11: 2284298, 5782: 2310939, 5784: 2319937, 5786: 2319993, 5791: 2320315}
[2025-12-16 18:17:10] 2025-12-16 23:16:37,983 | INFO     | --------------------------------------------------
[2025-12-16 18:17:10] 2025-12-16 23:16:37,983 | INFO     | 
[2025-12-16 18:17:10] 2025-12-16 23:16:37,984 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-16 18:17:10] 2025-12-16 23:16:38,009 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 18:17:10] 2025-12-16 23:16:38,009 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 18:17:10] 2025-12-16 23:16:38,010 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 18:17:10] 2025-12-16 23:16:38,010 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 18:17:10] 2025-12-16 23:16:38,010 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 18:17:10] 2025-12-16 23:16:38,010 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 18:17:10] 2025-12-16 23:16:38,010 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 18:17:10] 2025-12-16 23:16:38,010 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 18:17:10] 2025-12-16 23:16:38,011 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 18:17:10] 2025-12-16 23:16:38,011 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 18:17:10] 2025-12-16 23:16:38,011 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 18:17:10] 2025-12-16 23:16:38,011 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 18:17:10] 2025-12-16 23:16:38,011 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 18:17:10] 2025-12-16 23:16:38,011 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 18:17:10] 2025-12-16 23:16:38,012 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 18:17:10] 2025-12-16 23:16:38,012 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 18:17:10] 2025-12-16 23:16:38,012 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 18:17:10] 2025-12-16 23:16:38,012 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 18:17:10] 2025-12-16 23:16:38,012 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 18:17:10] 2025-12-16 23:16:38,012 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 18:17:10] 2025-12-16 23:16:38,013 | INFO     | job 6930759657 has completed (purged errors)
[2025-12-16 18:17:10] 2025-12-16 23:16:38,013 | INFO     | overall cleanup function is called
[2025-12-16 18:17:10] 2025-12-16 23:16:39,020 | INFO     | --- collectZombieJob: --- 10, [2534]
[2025-12-16 18:17:10] 2025-12-16 23:16:39,021 | INFO     | zombie collector waiting for pid 2534
[2025-12-16 18:17:10] 2025-12-16 23:16:39,021 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 18:17:10] 2025-12-16 23:16:39,021 | INFO     | collected zombie processes
[2025-12-16 18:17:10] 2025-12-16 23:16:39,021 | INFO     | will attempt to kill all subprocesses of pid=2534
[2025-12-16 18:17:10] 2025-12-16 23:16:39,111 | INFO     | process IDs to be killed: [2534] (in reverse order)
[2025-12-16 18:17:10] 2025-12-16 23:16:39,161 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 18:17:10] 2025-12-16 23:16:39,162 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 18:17:10] 2025-12-16 23:16:39,165 | INFO     | did not find any defunct processes belonging to 2534
[2025-12-16 18:17:10] 2025-12-16 23:16:39,168 | INFO     | did not find any defunct processes belonging to 2534
[2025-12-16 18:17:10] 2025-12-16 23:16:39,168 | INFO     | ready for new job
[2025-12-16 18:17:10] 2025-12-16 23:16:39,168 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 18:17:10] 2025-12-16 23:16:39,170 | INFO     | ***************************************
[2025-12-16 18:17:10] 2025-12-16 23:16:39,170 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 18:17:10] 2025-12-16 23:16:39,170 | INFO     | ***************************************
[2025-12-16 18:17:10] 2025-12-16 23:16:39,170 | INFO     | 
[2025-12-16 18:17:10] 2025-12-16 23:16:39,171 | INFO     | architecture information:
[2025-12-16 18:17:10] 2025-12-16 23:16:39,171 | INFO     | executing command: cat /etc/os-release
[2025-12-16 18:17:10] 2025-12-16 23:16:39,187 | INFO     | cat /etc/os-release:
[2025-12-16 18:17:10] NAME="CentOS Linux"
[2025-12-16 18:17:10] VERSION="7 (Core)"
[2025-12-16 18:17:10] ID="centos"
[2025-12-16 18:17:10] ID_LIKE="rhel fedora"
[2025-12-16 18:17:10] VERSION_ID="7"
[2025-12-16 18:17:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 18:17:10] ANSI_COLOR="0;31"
[2025-12-16 18:17:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 18:17:10] HOME_URL="https://www.centos.org/"
[2025-12-16 18:17:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 18:17:10] 
[2025-12-16 18:17:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 18:17:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 18:17:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 18:17:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 18:17:10] 
[2025-12-16 18:17:10] 2025-12-16 23:16:39,187 | INFO     | ***************************************
[2025-12-16 18:17:10] 2025-12-16 23:16:39,691 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-16 18:17:10] 2025-12-16 23:16:39,776 | INFO     | sufficient remaining disk space (29361176576 B)
[2025-12-16 18:17:10] 2025-12-16 23:16:39,776 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 18:17:10] 2025-12-16 23:16:39,776 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 18:17:10] 2025-12-16 23:16:39,777 | INFO     | update_server=False
[2025-12-16 18:17:10] 2025-12-16 23:16:39,777 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 18:17:10] 2025-12-16 23:16:39,777 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 18:17:10] 2025-12-16 23:16:39,777 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 18:17:10] 2025-12-16 23:16:39,778 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 18:17:10] 2025-12-16 23:16:40,263 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 18:17:10] 2025-12-16 23:16:40,263 | INFO     | aborting loop
[2025-12-16 18:17:10] 2025-12-16 23:16:40,405 | INFO     | all data control threads have been joined
[2025-12-16 18:17:10] 2025-12-16 23:16:40,780 | INFO     | [job] retrieve thread has finished
[2025-12-16 18:17:10] 2025-12-16 23:16:40,783 | INFO     | [job] queue monitor thread has finished
[2025-12-16 18:17:10] 2025-12-16 23:16:40,800 | INFO     | all payload control threads have been joined
[2025-12-16 18:17:10] 2025-12-16 23:16:40,887 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 18:17:10] 2025-12-16 23:16:41,032 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 18:17:10] 2025-12-16 23:16:41,269 | INFO     | [job] job monitor thread has finished
[2025-12-16 18:17:10] 2025-12-16 23:16:41,288 | INFO     | [payload] validate_post thread has finished
[2025-12-16 18:17:10] 2025-12-16 23:16:41,332 | INFO     | all job control threads have been joined
[2025-12-16 18:17:10] 2025-12-16 23:16:41,410 | INFO     | [data] control thread has finished
[2025-12-16 18:17:10] 2025-12-16 23:16:41,466 | INFO     | [data] copytool_in thread has finished
[2025-12-16 18:17:10] 2025-12-16 23:16:41,717 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 18:17:10] 2025-12-16 23:16:41,783 | INFO     | [data] copytool_out thread has finished
[2025-12-16 18:17:10] 2025-12-16 23:16:41,806 | INFO     | [payload] control thread has finished
[2025-12-16 18:17:10] 2025-12-16 23:16:42,196 | INFO     | [job] validate thread has finished
[2025-12-16 18:17:10] 2025-12-16 23:16:42,305 | INFO     | [payload] failed_post thread has finished
[2025-12-16 18:17:10] 2025-12-16 23:16:42,338 | INFO     | [job] control thread has finished
[2025-12-16 18:17:10] 2025-12-16 23:16:43,783 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 18:17:10] 2025-12-16 23:16:50,279 | INFO     | job.realtimelogging is not enabled
[2025-12-16 18:17:10] 2025-12-16 23:16:51,285 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 18:17:10] 2025-12-16 23:16:59,453 | INFO     | [monitor] cgroup control has ended
[2025-12-16 18:17:10] 2025-12-16 23:17:01,039 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140538534246208)>', '<ExcThread(monitor, started 140537956914944)>']
[2025-12-16 18:17:10] 2025-12-16 23:17:06,064 | INFO     | all workflow threads have been joined
[2025-12-16 18:17:10] 2025-12-16 23:17:06,065 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 18:17:10] 2025-12-16 23:17:06,065 | INFO     | traces error code: 0
[2025-12-16 18:17:10] 2025-12-16 23:17:06,065 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 18:17:10] 2025-12-16 23:17:10,159 | INFO     | PID=28342 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 18:17:10] 2025-12-16 23:17:10,160 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 18:17:10] 2025-12-16 23:17:10,160 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 18:17:10] 2025-12-16 23:17:10,160 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 18:17:10] 2025-12-16 23:17:10,161 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 18:17:10] 2025-12-16 23:17:10,161 | CRITICAL | thread 'MainThread' is not alive
[2025-12-16 18:17:10] 2025-12-16 23:17:10,161 | INFO     | [monitor] control thread has ended
[2025-12-16 18:17:10] 2025-12-16 23:17:10,253 [wrapper] ==== pilot stdout END ====
[2025-12-16 18:17:10] 2025-12-16 23:17:10,256 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 18:17:10] 2025-12-16 23:17:10,260 [wrapper] pilotpid: 28342
[2025-12-16 18:17:10] 2025-12-16 23:17:10,264 [wrapper] Pilot exit status: 0
[2025-12-16 18:17:10] 2025-12-16 23:17:10,278 [wrapper] pandaids: 6930759657
[2025-12-16 18:17:10] 2025-12-16 23:17:10,326 [wrapper] cleanup supervisor_pilot  1857 28343
[2025-12-16 18:17:10] 2025-12-16 23:17:10,330 [wrapper] Test setup, not cleaning
[2025-12-16 18:17:10] 2025-12-16 23:17:10,334 [wrapper] apfmon messages muted
[2025-12-16 18:17:10] 2025-12-16 23:17:10,338 [wrapper] ==== wrapper stdout END ====
[2025-12-16 18:17:10] 2025-12-16 23:17:10,342 [wrapper] ==== wrapper stderr END ====
[2025-12-16 18:17:10]  *** Error codes and diagnostics ***
[2025-12-16 18:17:10]     "exeErrorCode": 0,
[2025-12-16 18:17:10]     "exeErrorDiag": "",
[2025-12-16 18:17:10]     "pilotErrorCode": 0,
[2025-12-16 18:17:10]     "pilotErrorDiag": "",
[2025-12-16 18:17:10]  *** Listing of results directory ***
[2025-12-16 18:17:10] total 405264
[2025-12-16 18:17:10] -rw-r--r-- 1 boincer umatlas    579449 Dec 16 01:04 pilot3.tar.gz
[2025-12-16 18:17:10] -rw-r--r-- 1 boincer umatlas      5112 Dec 16 01:05 queuedata.json
[2025-12-16 18:17:10] -rwx------ 1 boincer umatlas     36322 Dec 16 01:05 runpilot2-wrapper.sh
[2025-12-16 18:17:10] -rw-r--r-- 1 boincer umatlas       100 Dec 16 16:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 18:17:10] -rwxr-xr-x 1 boincer umatlas      7986 Dec 16 16:39 run_atlas
[2025-12-16 18:17:10] -rw-r--r-- 1 boincer umatlas       105 Dec 16 16:39 job.xml
[2025-12-16 18:17:10] -rw-r--r-- 2 boincer umatlas 216921607 Dec 16 16:39 EVNT.47898779._000186.pool.root.1
[2025-12-16 18:17:10] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 16:39 start_atlas.sh
[2025-12-16 18:17:10] drwxrwx--x 2 boincer umatlas      4096 Dec 16 16:39 shared
[2025-12-16 18:17:10] -rw-r--r-- 2 boincer umatlas    592389 Dec 16 16:39 input.tar.gz
[2025-12-16 18:17:10] -rw-r--r-- 1 boincer umatlas         0 Dec 16 16:39 boinc_lockfile
[2025-12-16 18:17:10] -rw-r--r-- 1 boincer umatlas      2522 Dec 16 16:39 pandaJob.out
[2025-12-16 18:17:10] -rw------- 1 boincer umatlas        57 Dec 16 16:39 setup.sh.local
[2025-12-16 18:17:10] -rw------- 1 boincer umatlas    987401 Dec 16 16:39 agis_schedconf.cvmfs.json
[2025-12-16 18:17:10] -rw------- 1 boincer umatlas   1516240 Dec 16 16:39 agis_ddmendpoints.agis.ALL.json
[2025-12-16 18:17:10] drwx------ 5 boincer umatlas      4096 Dec 16 16:39 pilot3
[2025-12-16 18:17:10] -rw-r--r-- 1 boincer umatlas      5953 Dec 16 18:10 init_data.xml
[2025-12-16 18:17:10] -rw------- 1 boincer umatlas 191698834 Dec 16 18:15 HITS.47898782._004569.pool.root.1
[2025-12-16 18:17:10] -rw-r--r-- 1 boincer umatlas       529 Dec 16 18:16 boinc_task_state.xml
[2025-12-16 18:17:10] -rw------- 1 boincer umatlas      1046 Dec 16 18:16 memory_monitor_summary.json
[2025-12-16 18:17:10] -rw------- 1 boincer umatlas    403316 Dec 16 18:16 log.47898782._004569.job.log.tgz.1
[2025-12-16 18:17:10] -rw------- 1 boincer umatlas      7850 Dec 16 18:16 heartbeat.json
[2025-12-16 18:17:10] -rw-r--r-- 1 boincer umatlas      8192 Dec 16 18:16 boinc_mmap_file
[2025-12-16 18:17:10] -rw-r--r-- 1 boincer umatlas        27 Dec 16 18:16 wrapper_checkpoint.txt
[2025-12-16 18:17:10] -rw------- 1 boincer umatlas        95 Dec 16 18:17 pilot_heartbeat.json
[2025-12-16 18:17:10] -rw------- 1 boincer umatlas       815 Dec 16 18:17 pilotlog.txt
[2025-12-16 18:17:10] -rw------- 1 boincer umatlas    825402 Dec 16 18:17 log.47898782._004569.job.log.1
[2025-12-16 18:17:10] -rw------- 1 boincer umatlas       357 Dec 16 18:17 output.list
[2025-12-16 18:17:10] -rw-r--r-- 1 boincer umatlas       620 Dec 16 18:17 runtime_log
[2025-12-16 18:17:10] -rw------- 1 boincer umatlas   1249280 Dec 16 18:17 result.tar.gz
[2025-12-16 18:17:10] -rw------- 1 boincer umatlas       659 Dec 16 18:17 XQOKDm4Mdp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmm9UKDmZ4I0en.diag
[2025-12-16 18:17:10] -rw-r--r-- 1 boincer umatlas      9344 Dec 16 18:17 runtime_log.err
[2025-12-16 18:17:10] -rw-r--r-- 1 boincer umatlas     21864 Dec 16 18:17 stderr.txt
[2025-12-16 18:17:10] HITS file was successfully produced:
[2025-12-16 18:17:10] -rw------- 1 boincer umatlas 191698834 Dec 16 18:15 shared/HITS.pool.root.1
[2025-12-16 18:17:10]  *** Contents of shared directory: ***
[2025-12-16 18:17:10] total 400868
[2025-12-16 18:17:10] -rw-r--r-- 2 boincer umatlas 216921607 Dec 16 16:39 ATLAS.root_0
[2025-12-16 18:17:10] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 16:39 start_atlas.sh
[2025-12-16 18:17:10] -rw-r--r-- 2 boincer umatlas    592389 Dec 16 16:39 input.tar.gz
[2025-12-16 18:17:10] -rw------- 1 boincer umatlas 191698834 Dec 16 18:15 HITS.pool.root.1
[2025-12-16 18:17:10] -rw------- 1 boincer umatlas   1249280 Dec 16 18:17 result.tar.gz
18:17:11 (24656): run_atlas exited; CPU time 63756.360337
18:17:11 (24656): called boinc_finish(0)

</stderr_txt>
]]>

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