Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:54:01 (31597): wrapper (7.7.26015): starting
05:54:01 (31597): wrapper: running run_atlas (--nthreads 8)
[2025-12-17 05:54:01] Arguments: --nthreads 8
[2025-12-17 05:54:01] Threads: 8
[2025-12-17 05:54:01] Checking for CVMFS
[2025-12-17 05:54:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 05:54:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 05:54:02] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 05:54:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 05:54:03] 2.11.2.0 6904 1841 59360 154099 2 227 13424998 25165824 4125 130560 0 1627112 99.988 366937 2207 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-17 05:54:03] CVMFS is ok
[2025-12-17 05:54:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 05:54:03] Checking for apptainer binary...
[2025-12-17 05:54:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 05:54:03] Running /usr/bin/apptainer --version
[2025-12-17 05:54:03] apptainer version 1.3.2-1.el7
[2025-12-17 05:54:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 05:54:05] cg-vwn474.simple-grid.lan
[2025-12-17 05:54:05] apptainer works
[2025-12-17 05:54:05] Set ATHENA_PROC_NUMBER=8
[2025-12-17 05:54:05] Set ATHENA_CORE_NUMBER=8
[2025-12-17 05:54:05] Starting ATLAS job with PandaID=6931013642
[2025-12-17 05:54:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 10:07:27]  *** The last 200 lines of the pilot log: ***
[2025-12-17 10:07:27] 2025-12-17 09:06:43,464 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 10:07:27] 2025-12-17 09:06:43,893 | INFO     | PID=4950 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-17 10:07:27] 2025-12-17 09:06:43,893 | INFO     | .. there are 9 such processes running
[2025-12-17 10:07:27] 2025-12-17 09:06:44,894 | INFO     | time since job start (15137s) is within the limit (174528.0s)
[2025-12-17 10:07:27] 2025-12-17 09:06:45,969 | INFO     | monitor loop #1054: job 0:6931013642 is in state 'finished'
[2025-12-17 10:07:27] 2025-12-17 09:06:45,969 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 10:07:27] 2025-12-17 09:06:46,902 | INFO     | time since job start (15139s) is within the limit (174528.0s)
[2025-12-17 10:07:27] 2025-12-17 09:06:48,380 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-17 10:07:27] 2025-12-17 09:06:48,381 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-12-17 10:07:27] 2025-12-17 09:06:48,383 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6931013642/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 10:07:27] 2025-12-17 09:06:48,384 | INFO     | extracted standard info from prmon json
[2025-12-17 10:07:27] 2025-12-17 09:06:48,384 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 10:07:27] 2025-12-17 09:06:48,384 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 10:07:27] 2025-12-17 09:06:48,384 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 10:07:27] 2025-12-17 09:06:48,385 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 10:07:27] 2025-12-17 09:06:48,393 | INFO     | fitting pss+swap vs Time
[2025-12-17 10:07:27] 2025-12-17 09:06:48,393 | INFO     | sum of square deviations: 4504437945.0
[2025-12-17 10:07:27] 2025-12-17 09:06:48,395 | INFO     | sum of deviations: 70639085281.5
[2025-12-17 10:07:27] 2025-12-17 09:06:48,396 | INFO     | mean x: 1765954882.5
[2025-12-17 10:07:27] 2025-12-17 09:06:48,396 | INFO     | mean y: 2427001.0532786883
[2025-12-17 10:07:27] 2025-12-17 09:06:48,396 | INFO     | intersect: -27691469345.47499
[2025-12-17 10:07:27] 2025-12-17 09:06:48,397 | INFO     | chi2: 4.14532665266805
[2025-12-17 10:07:27] 2025-12-17 09:06:48,400 | INFO     | sum of square deviations: 4233158440.0
[2025-12-17 10:07:27] 2025-12-17 09:06:48,402 | INFO     | sum of deviations: 84987569727.99997
[2025-12-17 10:07:27] 2025-12-17 09:06:48,403 | INFO     | mean x: 1765954730.0
[2025-12-17 10:07:27] 2025-12-17 09:06:48,403 | INFO     | mean y: 2434917.108786611
[2025-12-17 10:07:27] 2025-12-17 09:06:48,403 | INFO     | intersect: -35451990632.89882
[2025-12-17 10:07:27] 2025-12-17 09:06:48,403 | INFO     | chi2: 3.3895141133888886
[2025-12-17 10:07:27] 2025-12-17 09:06:48,403 | INFO     | current chi2=3.3895141133888886 (change=18.232882535148324 %)
[2025-12-17 10:07:27] 2025-12-17 09:06:48,403 | INFO     | right removable region: 238
[2025-12-17 10:07:27] 2025-12-17 09:06:48,404 | INFO     | sum of square deviations: 4233158440.0
[2025-12-17 10:07:27] 2025-12-17 09:06:48,409 | INFO     | sum of deviations: 955306847.9999981
[2025-12-17 10:07:27] 2025-12-17 09:06:48,409 | INFO     | mean x: 1765955035.0
[2025-12-17 10:07:27] 2025-12-17 09:06:48,409 | INFO     | mean y: 2466062.9037656905
[2025-12-17 10:07:27] 2025-12-17 09:06:48,409 | INFO     | intersect: -396061174.40785646
[2025-12-17 10:07:27] 2025-12-17 09:06:48,410 | INFO     | chi2: 0.8574753402065957
[2025-12-17 10:07:27] 2025-12-17 09:06:48,410 | INFO     | current chi2=0.8574753402065957 (change=79.31464967532293 %)
[2025-12-17 10:07:27] 2025-12-17 09:06:48,410 | INFO     | sum of square deviations: 3972995422.5
[2025-12-17 10:07:27] 2025-12-17 09:06:48,412 | INFO     | sum of deviations: -5752888802.499996
[2025-12-17 10:07:27] 2025-12-17 09:06:48,412 | INFO     | mean x: 1765955187.5
[2025-12-17 10:07:27] 2025-12-17 09:06:48,412 | INFO     | mean y: 2469955.123931624
[2025-12-17 10:07:27] 2025-12-17 09:06:48,412 | INFO     | intersect: 2559569257.668001
[2025-12-17 10:07:27] 2025-12-17 09:06:48,413 | INFO     | chi2: 0.8068234190935174
[2025-12-17 10:07:27] 2025-12-17 09:06:48,413 | INFO     | current chi2=0.8068234190935174 (change=5.90709945091534 %)
[2025-12-17 10:07:27] 2025-12-17 09:06:48,413 | INFO     | left removable region: 20
[2025-12-17 10:07:27] 2025-12-17 09:06:48,413 | INFO     | sum of square deviations: 3212467674.5
[2025-12-17 10:07:27] 2025-12-17 09:06:48,415 | INFO     | sum of deviations: 7160082216.999998
[2025-12-17 10:07:27] 2025-12-17 09:06:48,415 | INFO     | mean x: 1765955309.5
[2025-12-17 10:07:27] 2025-12-17 09:06:48,415 | INFO     | mean y: 2480680.5412844038
[2025-12-17 10:07:27] 2025-12-17 09:06:48,416 | INFO     | intersect: -3933554320.818128
[2025-12-17 10:07:27] 2025-12-17 09:06:48,416 | INFO     | chi2: 0.001562965813047778
[2025-12-17 10:07:27] 2025-12-17 09:06:48,416 | INFO     | current memory leak: 2.23 B/s (using 218 data points, chi2=0.00)
[2025-12-17 10:07:27] 2025-12-17 09:06:48,417 | INFO     | could have reported an average CPU frequency of 2249 MHz (11 samples)
[2025-12-17 10:07:27] 2025-12-17 09:06:48,417 | INFO     | ..............................
[2025-12-17 10:07:27] 2025-12-17 09:06:48,417 | INFO     | . Timing measurements:
[2025-12-17 10:07:27] 2025-12-17 09:06:48,417 | INFO     | . get job = 0 s
[2025-12-17 10:07:27] 2025-12-17 09:06:48,417 | INFO     | . initial setup = 2 s
[2025-12-17 10:07:27] 2025-12-17 09:06:48,417 | INFO     | . payload setup = 24 s
[2025-12-17 10:07:27] 2025-12-17 09:06:48,418 | INFO     | . stage-in = 0 s
[2025-12-17 10:07:27] 2025-12-17 09:06:48,418 | INFO     | . payload execution = 14978 s
[2025-12-17 10:07:27] 2025-12-17 09:06:48,418 | INFO     | . stage-out = 3 s
[2025-12-17 10:07:27] 2025-12-17 09:06:48,418 | INFO     | . log creation = 1 s
[2025-12-17 10:07:27] 2025-12-17 09:06:48,418 | INFO     | ..............................
[2025-12-17 10:07:27] 2025-12-17 09:06:48,532 | INFO     | 
[2025-12-17 10:07:27] 2025-12-17 09:06:48,532 | INFO     | job summary report
[2025-12-17 10:07:27] 2025-12-17 09:06:48,532 | INFO     | --------------------------------------------------
[2025-12-17 10:07:27] 2025-12-17 09:06:48,532 | INFO     | PanDA job id: 6931013642
[2025-12-17 10:07:27] 2025-12-17 09:06:48,532 | INFO     | task id: 47886933
[2025-12-17 10:07:27] 2025-12-17 09:06:48,533 | INFO     | errors: (none)
[2025-12-17 10:07:27] 2025-12-17 09:06:48,533 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 10:07:27] 2025-12-17 09:06:48,533 | INFO     | pilot state: finished 
[2025-12-17 10:07:27] 2025-12-17 09:06:48,533 | INFO     | transexitcode: 0
[2025-12-17 10:07:27] 2025-12-17 09:06:48,533 | INFO     | exeerrorcode: 0
[2025-12-17 10:07:27] 2025-12-17 09:06:48,533 | INFO     | exeerrordiag: 
[2025-12-17 10:07:27] 2025-12-17 09:06:48,533 | INFO     | exitcode: 0
[2025-12-17 10:07:27] 2025-12-17 09:06:48,533 | INFO     | exitmsg: OK
[2025-12-17 10:07:27] 2025-12-17 09:06:48,533 | INFO     | cpuconsumptiontime: 56178 s
[2025-12-17 10:07:27] 2025-12-17 09:06:48,533 | INFO     | nevents: 400
[2025-12-17 10:07:27] 2025-12-17 09:06:48,533 | INFO     | neventsw: 0
[2025-12-17 10:07:27] 2025-12-17 09:06:48,533 | INFO     | pid: 18994
[2025-12-17 10:07:27] 2025-12-17 09:06:48,533 | INFO     | pgrp: 18994
[2025-12-17 10:07:27] 2025-12-17 09:06:48,534 | INFO     | corecount: 8
[2025-12-17 10:07:27] 2025-12-17 09:06:48,534 | INFO     | event service: False
[2025-12-17 10:07:27] 2025-12-17 09:06:48,534 | INFO     | sizes: {0: 2283965, 1: 2283965, 12: 2284283, 22: 2284283, 15006: 2314601, 15010: 2323599, 15011: 2323783, 15105: 2323977}
[2025-12-17 10:07:27] 2025-12-17 09:06:48,534 | INFO     | --------------------------------------------------
[2025-12-17 10:07:27] 2025-12-17 09:06:48,534 | INFO     | 
[2025-12-17 10:07:27] 2025-12-17 09:06:48,534 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-12-17 10:07:27] 2025-12-17 09:06:48,909 | INFO     | time since job start (15141s) is within the limit (174528.0s)
[2025-12-17 10:07:27] 2025-12-17 09:06:48,995 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 10:07:27] 2025-12-17 09:06:48,996 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 10:07:27] 2025-12-17 09:06:48,996 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 10:07:27] 2025-12-17 09:06:48,996 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 10:07:27] 2025-12-17 09:06:48,996 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 10:07:27] 2025-12-17 09:06:48,996 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 10:07:27] 2025-12-17 09:06:48,996 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 10:07:27] 2025-12-17 09:06:48,996 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 10:07:27] 2025-12-17 09:06:48,996 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 10:07:27] 2025-12-17 09:06:48,996 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 10:07:27] 2025-12-17 09:06:48,997 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 10:07:27] 2025-12-17 09:06:48,997 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 10:07:27] 2025-12-17 09:06:48,997 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 10:07:27] 2025-12-17 09:06:48,997 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 10:07:27] 2025-12-17 09:06:48,997 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 10:07:27] 2025-12-17 09:06:48,997 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 10:07:27] 2025-12-17 09:06:48,997 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 10:07:27] 2025-12-17 09:06:48,997 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 10:07:27] 2025-12-17 09:06:48,997 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 10:07:27] 2025-12-17 09:06:48,997 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 10:07:27] 2025-12-17 09:06:48,997 | INFO     | job 6931013642 has completed (purged errors)
[2025-12-17 10:07:27] 2025-12-17 09:06:48,998 | INFO     | overall cleanup function is called
[2025-12-17 10:07:27] 2025-12-17 09:06:50,006 | INFO     | --- collectZombieJob: --- 10, [18994]
[2025-12-17 10:07:27] 2025-12-17 09:06:50,006 | INFO     | zombie collector waiting for pid 18994
[2025-12-17 10:07:27] 2025-12-17 09:06:50,006 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 10:07:27] 2025-12-17 09:06:50,007 | INFO     | collected zombie processes
[2025-12-17 10:07:27] 2025-12-17 09:06:50,007 | INFO     | will attempt to kill all subprocesses of pid=18994
[2025-12-17 10:07:27] 2025-12-17 09:06:50,145 | INFO     | process IDs to be killed: [18994] (in reverse order)
[2025-12-17 10:07:27] 2025-12-17 09:06:51,028 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 10:07:27] 2025-12-17 09:06:51,028 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 10:07:27] 2025-12-17 09:06:51,031 | INFO     | did not find any defunct processes belonging to 18994
[2025-12-17 10:07:27] 2025-12-17 09:06:51,034 | INFO     | did not find any defunct processes belonging to 18994
[2025-12-17 10:07:27] 2025-12-17 09:06:51,035 | INFO     | ready for new job
[2025-12-17 10:07:27] 2025-12-17 09:06:51,035 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 10:07:27] 2025-12-17 09:06:51,037 | INFO     | ***************************************
[2025-12-17 10:07:27] 2025-12-17 09:06:51,037 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 10:07:27] 2025-12-17 09:06:51,037 | INFO     | ***************************************
[2025-12-17 10:07:27] 2025-12-17 09:06:51,037 | INFO     | 
[2025-12-17 10:07:27] 2025-12-17 09:06:51,038 | INFO     | pilot is running in a VM
[2025-12-17 10:07:27] 2025-12-17 09:06:51,038 | INFO     | architecture information:
[2025-12-17 10:07:27] 2025-12-17 09:06:51,052 | INFO     | executing command: cat /etc/os-release
[2025-12-17 10:07:27] 2025-12-17 09:06:51,241 | INFO     | cat /etc/os-release:
[2025-12-17 10:07:27] NAME="CentOS Linux"
[2025-12-17 10:07:27] VERSION="7 (Core)"
[2025-12-17 10:07:27] ID="centos"
[2025-12-17 10:07:27] ID_LIKE="rhel fedora"
[2025-12-17 10:07:27] VERSION_ID="7"
[2025-12-17 10:07:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 10:07:27] ANSI_COLOR="0;31"
[2025-12-17 10:07:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 10:07:27] HOME_URL="https://www.centos.org/"
[2025-12-17 10:07:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 10:07:27] 
[2025-12-17 10:07:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 10:07:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 10:07:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 10:07:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 10:07:27] 
[2025-12-17 10:07:27] 2025-12-17 09:06:51,242 | INFO     | ***************************************
[2025-12-17 10:07:27] 2025-12-17 09:06:51,746 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-12-17 10:07:27] 2025-12-17 09:06:51,891 | INFO     | sufficient remaining disk space (495993225216 B)
[2025-12-17 10:07:27] 2025-12-17 09:06:51,891 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 10:07:27] 2025-12-17 09:06:51,891 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 10:07:27] 2025-12-17 09:06:51,891 | INFO     | update_server=False
[2025-12-17 10:07:27] 2025-12-17 09:06:51,891 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 10:07:27] 2025-12-17 09:06:51,892 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 10:07:27] 2025-12-17 09:06:51,969 | INFO     | all job control threads have been joined
[2025-12-17 10:07:27] 2025-12-17 09:06:51,996 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 10:07:27] 2025-12-17 09:06:51,996 | INFO     | aborting loop
[2025-12-17 10:07:27] 2025-12-17 09:06:52,017 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 10:07:27] 2025-12-17 09:06:52,035 | INFO     | all data control threads have been joined
[2025-12-17 10:07:27] 2025-12-17 09:06:52,378 | INFO     | all payload control threads have been joined
[2025-12-17 10:07:27] 2025-12-17 09:06:52,897 | INFO     | [job] retrieve thread has finished
[2025-12-17 10:07:27] 2025-12-17 09:06:52,906 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 10:07:27] 2025-12-17 09:06:52,975 | INFO     | [job] validate thread has finished
[2025-12-17 10:07:27] 2025-12-17 09:06:52,976 | INFO     | [job] control thread has finished
[2025-12-17 10:07:27] 2025-12-17 09:06:53,002 | INFO     | [job] job monitor thread has finished
[2025-12-17 10:07:27] 2025-12-17 09:06:53,009 | INFO     | [monitor] cgroup control has ended
[2025-12-17 10:07:27] 2025-12-17 09:06:53,040 | INFO     | [data] control thread has finished
[2025-12-17 10:07:27] 2025-12-17 09:06:53,099 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 10:07:27] 2025-12-17 09:06:53,304 | INFO     | [payload] failed_post thread has finished
[2025-12-17 10:07:27] 2025-12-17 09:06:53,384 | INFO     | [payload] control thread has finished
[2025-12-17 10:07:27] 2025-12-17 09:06:53,545 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 10:07:27] 2025-12-17 09:06:53,679 | INFO     | [data] copytool_in thread has finished
[2025-12-17 10:07:27] 2025-12-17 09:06:53,723 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 10:07:27] 2025-12-17 09:06:53,822 | INFO     | [payload] validate_post thread has finished
[2025-12-17 10:07:27] 2025-12-17 09:06:53,863 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 10:07:27] 2025-12-17 09:06:54,024 | INFO     | [data] copytool_out thread has finished
[2025-12-17 10:07:27] 2025-12-17 09:06:54,551 | INFO     | [job] queue monitor thread has finished
[2025-12-17 10:07:27] 2025-12-17 09:06:55,901 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 10:07:27] 2025-12-17 09:06:57,626 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140626022414144)>', '<ExcThread(monitor, started 140625567520512)>']
[2025-12-17 10:07:27] 2025-12-17 09:07:02,652 | INFO     | all workflow threads have been joined
[2025-12-17 10:07:27] 2025-12-17 09:07:02,652 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 10:07:27] 2025-12-17 09:07:02,653 | INFO     | traces error code: 0
[2025-12-17 10:07:27] 2025-12-17 09:07:02,653 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 10:07:27] 2025-12-17 09:07:22,142 | INFO     | PID=4950 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-17 10:07:27] 2025-12-17 09:07:22,142 | INFO     | .. there are 9 such processes running
[2025-12-17 10:07:27] 2025-12-17 09:07:22,143 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 10:07:27] 2025-12-17 09:07:22,143 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 10:07:27] 2025-12-17 09:07:22,143 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 10:07:27] 2025-12-17 09:07:22,143 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 10:07:27] 2025-12-17 09:07:22,143 | INFO     | [monitor] control thread has ended
[2025-12-17 10:07:27] 2025-12-17 09:07:22,572 [wrapper] ==== pilot stdout END ====
[2025-12-17 10:07:27] 2025-12-17 09:07:22,698 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 10:07:27] 2025-12-17 09:07:22,804 [wrapper] pilotpid: 4950
[2025-12-17 10:07:27] 2025-12-17 09:07:22,890 [wrapper] Pilot exit status: 0
[2025-12-17 10:07:27] 2025-12-17 09:07:23,369 [wrapper] pandaids: 6931013642
[2025-12-17 10:07:27] 2025-12-17 09:07:24,280 [wrapper] cleanup supervisor_pilot 28529 4951
[2025-12-17 10:07:27] 2025-12-17 09:07:24,361 [wrapper] Test setup, not cleaning
[2025-12-17 10:07:27] 2025-12-17 09:07:24,439 [wrapper] apfmon messages muted
[2025-12-17 10:07:27] 2025-12-17 09:07:24,468 [wrapper] ==== wrapper stdout END ====
[2025-12-17 10:07:27] 2025-12-17 09:07:24,534 [wrapper] ==== wrapper stderr END ====
[2025-12-17 10:07:27]  *** Error codes and diagnostics ***
[2025-12-17 10:07:27]     "exeErrorCode": 0,
[2025-12-17 10:07:27]     "exeErrorDiag": "",
[2025-12-17 10:07:27]     "pilotErrorCode": 0,
[2025-12-17 10:07:27]     "pilotErrorDiag": "",
[2025-12-17 10:07:27]  *** Listing of results directory ***
[2025-12-17 10:07:27] total 341744
[2025-12-17 10:07:27] -rw-r--r--. 1 boinc boinc    579449 Dec 16 10:01 pilot3.tar.gz
[2025-12-17 10:07:27] -rwx------. 1 boinc boinc     36322 Dec 16 10:04 runpilot2-wrapper.sh
[2025-12-17 10:07:27] -rw-r--r--. 1 boinc boinc      5112 Dec 16 10:06 queuedata.json
[2025-12-17 10:07:27] -rw-r--r--. 1 boinc boinc       100 Dec 17 05:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 10:07:27] -rwxr-xr-x. 1 boinc boinc      7986 Dec 17 05:54 run_atlas
[2025-12-17 10:07:27] -rw-r--r--. 1 boinc boinc       105 Dec 17 05:54 job.xml
[2025-12-17 10:07:27] -rw-r--r--. 1 boinc boinc      6393 Dec 17 05:54 init_data.xml
[2025-12-17 10:07:27] -rw-r--r--. 2 boinc boinc 191795000 Dec 17 05:54 EVNT.47886929._000267.pool.root.1
[2025-12-17 10:07:27] -rw-r--r--. 2 boinc boinc     15847 Dec 17 05:54 start_atlas.sh
[2025-12-17 10:07:27] drwxrwx--x. 2 boinc boinc        68 Dec 17 05:54 shared
[2025-12-17 10:07:27] -rw-r--r--. 2 boinc boinc    592400 Dec 17 05:54 input.tar.gz
[2025-12-17 10:07:27] -rw-r--r--. 1 boinc boinc         0 Dec 17 05:54 boinc_lockfile
[2025-12-17 10:07:27] -rw-r--r--. 1 boinc boinc      2513 Dec 17 05:54 pandaJob.out
[2025-12-17 10:07:27] -rw-------. 1 boinc boinc    987409 Dec 17 05:54 agis_schedconf.cvmfs.json
[2025-12-17 10:07:27] drwx------. 5 boinc boinc      4096 Dec 17 05:54 pilot3
[2025-12-17 10:07:27] -rw-------. 1 boinc boinc 149236274 Dec 17 10:04 HITS.47886933._006886.pool.root.1
[2025-12-17 10:07:27] -rw-r--r--. 1 boinc boinc       531 Dec 17 10:04 boinc_task_state.xml
[2025-12-17 10:07:27] -rw-------. 1 boinc boinc      1017 Dec 17 10:05 memory_monitor_summary.json
[2025-12-17 10:07:27] -rw-------. 1 boinc boinc   1516240 Dec 17 10:05 agis_ddmendpoints.agis.ALL.json
[2025-12-17 10:07:27] -rw-------. 1 boinc boinc    464588 Dec 17 10:05 log.47886933._006886.job.log.tgz.1
[2025-12-17 10:07:27] -rw-------. 1 boinc boinc        95 Dec 17 10:06 pilot_heartbeat.json
[2025-12-17 10:07:27] -rw-------. 1 boinc boinc      7774 Dec 17 10:06 heartbeat.json
[2025-12-17 10:07:27] -rw-r--r--. 1 boinc boinc      8192 Dec 17 10:07 boinc_mmap_file
[2025-12-17 10:07:27] -rw-r--r--. 1 boinc boinc        28 Dec 17 10:07 wrapper_checkpoint.txt
[2025-12-17 10:07:27] -rw-------. 1 boinc boinc       819 Dec 17 10:07 pilotlog.txt
[2025-12-17 10:07:27] -rw-------. 1 boinc boinc   2044979 Dec 17 10:07 log.47886933._006886.job.log.1
[2025-12-17 10:07:27] -rw-------. 1 boinc boinc       357 Dec 17 10:07 output.list
[2025-12-17 10:07:27] -rw-r--r--. 1 boinc boinc       620 Dec 17 10:07 runtime_log
[2025-12-17 10:07:27] -rw-------. 1 boinc boinc   2529280 Dec 17 10:07 result.tar.gz
[2025-12-17 10:07:27] -rw-------. 1 boinc boinc       656 Dec 17 10:07 tNJNDm29fp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTuZKDmmKYJJn.diag
[2025-12-17 10:07:27] -rw-r--r--. 1 boinc boinc      8817 Dec 17 10:07 runtime_log.err
[2025-12-17 10:07:27] -rw-r--r--. 1 boinc boinc     21033 Dec 17 10:07 stderr.txt
[2025-12-17 10:07:27] HITS file was successfully produced:
[2025-12-17 10:07:27] -rw-------. 1 boinc boinc 149236274 Dec 17 10:04 shared/HITS.pool.root.1
[2025-12-17 10:07:27]  *** Contents of shared directory: ***
[2025-12-17 10:07:27] total 336108
[2025-12-17 10:07:27] -rw-r--r--. 2 boinc boinc 191795000 Dec 17 05:54 ATLAS.root_0
[2025-12-17 10:07:27] -rw-r--r--. 2 boinc boinc     15847 Dec 17 05:54 start_atlas.sh
[2025-12-17 10:07:27] -rw-r--r--. 2 boinc boinc    592400 Dec 17 05:54 input.tar.gz
[2025-12-17 10:07:27] -rw-------. 1 boinc boinc 149236274 Dec 17 10:04 HITS.pool.root.1
[2025-12-17 10:07:27] -rw-------. 1 boinc boinc   2529280 Dec 17 10:07 result.tar.gz
10:07:29 (31597): run_atlas exited; CPU time 56378.148583
10:07:29 (31597): called boinc_finish(0)

</stderr_txt>
]]>

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