Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:16:19 (1702043): wrapper (7.7.26015): starting
19:16:19 (1702043): wrapper: running run_atlas (--nthreads 3)
[2025-12-17 19:16:19] Arguments: --nthreads 3
[2025-12-17 19:16:19] Threads: 3
[2025-12-17 19:16:19] Checking for CVMFS
[2025-12-17 19:16:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 19:16:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 19:16:19] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 19:16:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 19:16:19] 2.9.2.0 21575 6502 83316 154119 1 56 14383235 36864001 0 130560 0 4428540 99.990 231422 13577 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-17 19:16:19] CVMFS is ok
[2025-12-17 19:16:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 19:16:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 19:16:19] Further information can be found at the LHC@home message board.
[2025-12-17 19:16:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 19:16:19] Checking for apptainer binary...
[2025-12-17 19:16:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 19:16:19] Running /usr/bin/apptainer --version
[2025-12-17 19:16:19] apptainer version 1.4.1-1.1
[2025-12-17 19:16:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 19:16:19] cosA121b
[2025-12-17 19:16:19] apptainer works
[2025-12-17 19:16:19] Set ATHENA_PROC_NUMBER=3
[2025-12-17 19:16:19] Set ATHENA_CORE_NUMBER=3
[2025-12-17 19:16:19] Starting ATLAS job with PandaID=6931012451
[2025-12-17 19:16:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 20:41:38]  *** The last 200 lines of the pilot log: ***
[2025-12-17 20:41:38]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-17 20:41:38]  replicas=None
[2025-12-17 20:41:38]  scope=mc23_13p6TeV
[2025-12-17 20:41:38]  status=None
[2025-12-17 20:41:38]  status_code=0
[2025-12-17 20:41:38]  storage_token=
[2025-12-17 20:41:38]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6931012451/log.47886933._006575.job.log.tgz.1
[2025-12-17 20:41:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/83/bc/log.47886933._006575.job.log.tgz.1
[2025-12-17 20:41:38]  workdir=None
[2025-12-17 20:41:38] ]
[2025-12-17 20:41:38] 2025-12-17 19:40:40,382 | INFO     | transferring file log.47886933._006575.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6931012451/log.47886933._006575.job.log.tgz.1 to /local/data/boinc/
[2025-12-17 20:41:38] 2025-12-17 19:40:40,382 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6931012451/log.47886933._006575.job.log.tgz.1 /local/data/boinc/slots/0/log.47886933._0065
[2025-12-17 20:41:38] 2025-12-17 19:40:40,394 | INFO     | adding to output.list: log.47886933._006575.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/83/bc/log.47886933._006575.job.log.tg
[2025-12-17 20:41:38] 2025-12-17 19:40:40,395 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-17 20:41:38] 2025-12-17 19:40:40,395 | INFO     | summary of transferred files:
[2025-12-17 20:41:38] 2025-12-17 19:40:40,395 | INFO     |  -- lfn=log.47886933._006575.job.log.tgz.1, status_code=0, status=transferred
[2025-12-17 20:41:38] 2025-12-17 19:40:40,395 | INFO     | stage-out finished correctly
[2025-12-17 20:41:38] 2025-12-17 19:40:40,423 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-17 20:41:38] 2025-12-17 19:40:40,892 | INFO     | monitor loop #389: job 0:6931012451 is in state 'finished'
[2025-12-17 20:41:38] 2025-12-17 19:40:40,892 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 20:41:38] 2025-12-17 19:40:41,926 | INFO     | job 6931012451 has state=finished
[2025-12-17 20:41:38] 2025-12-17 19:40:41,926 | INFO     | preparing for final server update for job 6931012451 in state='finished'
[2025-12-17 20:41:38] 2025-12-17 19:40:41,927 | INFO     | this job has now completed (state=finished)
[2025-12-17 20:41:38] 2025-12-17 19:40:41,927 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-17 20:41:38] 2025-12-17 19:40:41,927 | INFO     | log transfer has been attempted: DONE
[2025-12-17 20:41:38] 2025-12-17 19:40:41,927 | INFO     | job 6931012451 has finished - writing final server update
[2025-12-17 20:41:38] 2025-12-17 19:40:41,927 | INFO     | total number of processed events: 400 (read)
[2025-12-17 20:41:38] 2025-12-17 19:40:41,928 | INFO     | executing command: lscpu
[2025-12-17 20:41:38] 2025-12-17 19:40:41,944 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-17 20:41:38] 2025-12-17 19:40:41,975 | INFO     | time since job start (5056s) is within the limit (174528.0s)
[2025-12-17 20:41:38] 2025-12-17 19:40:43,396 | INFO     | monitor loop #390: job 0:6931012451 is in state 'finished'
[2025-12-17 20:41:38] 2025-12-17 19:40:43,396 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 20:41:38] 2025-12-17 19:40:43,978 | INFO     | time since job start (5058s) is within the limit (174528.0s)
[2025-12-17 20:41:38] 2025-12-17 19:40:45,899 | INFO     | monitor loop #391: job 0:6931012451 is in state 'finished'
[2025-12-17 20:41:38] 2025-12-17 19:40:45,899 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 20:41:38] 2025-12-17 19:40:45,983 | INFO     | time since job start (5060s) is within the limit (174528.0s)
[2025-12-17 20:41:38] 2025-12-17 19:40:46,678 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-17 20:41:38] 2025-12-17 19:40:46,679 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3769.484833333334
[2025-12-17 20:41:38] 2025-12-17 19:40:46,680 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6931012451/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 20:41:38] 2025-12-17 19:40:46,681 | INFO     | extracted standard info from prmon json
[2025-12-17 20:41:38] 2025-12-17 19:40:46,681 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 20:41:38] 2025-12-17 19:40:46,681 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 20:41:38] 2025-12-17 19:40:46,681 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 20:41:38] 2025-12-17 19:40:46,681 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 20:41:38] 2025-12-17 19:40:46,682 | INFO     | fitting pss+swap vs Time
[2025-12-17 20:41:38] 2025-12-17 19:40:46,682 | INFO     | sum of square deviations: 136095575.0
[2025-12-17 20:41:38] 2025-12-17 19:40:46,682 | INFO     | sum of deviations: -14497932525.0
[2025-12-17 20:41:38] 2025-12-17 19:40:46,682 | INFO     | mean x: 1765997996.5
[2025-12-17 20:41:38] 2025-12-17 19:40:46,682 | INFO     | mean y: 2500146.0
[2025-12-17 20:41:38] 2025-12-17 19:40:46,682 | INFO     | intersect: 188129996521.55948
[2025-12-17 20:41:38] 2025-12-17 19:40:46,682 | INFO     | chi2: 0.04406310499887995
[2025-12-17 20:41:38] 2025-12-17 19:40:46,682 | INFO     | current memory leak: -106.53 B/s (using 76 data points, chi2=0.04)
[2025-12-17 20:41:38] 2025-12-17 19:40:46,682 | INFO     | could have reported an average CPU frequency of 3858 MHz (6 samples)
[2025-12-17 20:41:38] 2025-12-17 19:40:46,682 | INFO     | ..............................
[2025-12-17 20:41:38] 2025-12-17 19:40:46,682 | INFO     | . Timing measurements:
[2025-12-17 20:41:38] 2025-12-17 19:40:46,683 | INFO     | . get job = 0 s
[2025-12-17 20:41:38] 2025-12-17 19:40:46,683 | INFO     | . initial setup = 1 s
[2025-12-17 20:41:38] 2025-12-17 19:40:46,683 | INFO     | . payload setup = 2 s
[2025-12-17 20:41:38] 2025-12-17 19:40:46,683 | INFO     | . stage-in = 0 s
[2025-12-17 20:41:38] 2025-12-17 19:40:46,683 | INFO     | . payload execution = 5035 s
[2025-12-17 20:41:38] 2025-12-17 19:40:46,683 | INFO     | . stage-out = 0 s
[2025-12-17 20:41:38] 2025-12-17 19:40:46,683 | INFO     | . log creation = 0 s
[2025-12-17 20:41:38] 2025-12-17 19:40:46,683 | INFO     | ..............................
[2025-12-17 20:41:38] 2025-12-17 19:40:46,712 | INFO     | 
[2025-12-17 20:41:38] 2025-12-17 19:40:46,712 | INFO     | job summary report
[2025-12-17 20:41:38] 2025-12-17 19:40:46,712 | INFO     | --------------------------------------------------
[2025-12-17 20:41:38] 2025-12-17 19:40:46,712 | INFO     | PanDA job id: 6931012451
[2025-12-17 20:41:38] 2025-12-17 19:40:46,713 | INFO     | task id: 47886933
[2025-12-17 20:41:38] 2025-12-17 19:40:46,713 | INFO     | errors: (none)
[2025-12-17 20:41:38] 2025-12-17 19:40:46,713 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 20:41:38] 2025-12-17 19:40:46,713 | INFO     | pilot state: finished 
[2025-12-17 20:41:38] 2025-12-17 19:40:46,713 | INFO     | transexitcode: 0
[2025-12-17 20:41:38] 2025-12-17 19:40:46,713 | INFO     | exeerrorcode: 0
[2025-12-17 20:41:38] 2025-12-17 19:40:46,713 | INFO     | exeerrordiag: 
[2025-12-17 20:41:38] 2025-12-17 19:40:46,713 | INFO     | exitcode: 0
[2025-12-17 20:41:38] 2025-12-17 19:40:46,713 | INFO     | exitmsg: OK
[2025-12-17 20:41:38] 2025-12-17 19:40:46,713 | INFO     | cpuconsumptiontime: 14546 s
[2025-12-17 20:41:38] 2025-12-17 19:40:46,713 | INFO     | nevents: 400
[2025-12-17 20:41:38] 2025-12-17 19:40:46,713 | INFO     | neventsw: 0
[2025-12-17 20:41:38] 2025-12-17 19:40:46,713 | INFO     | pid: 1712203
[2025-12-17 20:41:38] 2025-12-17 19:40:46,713 | INFO     | pgrp: 1712203
[2025-12-17 20:41:38] 2025-12-17 19:40:46,713 | INFO     | corecount: 3
[2025-12-17 20:41:38] 2025-12-17 19:40:46,713 | INFO     | event service: False
[2025-12-17 20:41:38] 2025-12-17 19:40:46,713 | INFO     | sizes: {0: 2283968, 2: 2284230, 11: 2284258, 5041: 2310747, 5042: 2319806, 5048: 2319944}
[2025-12-17 20:41:38] 2025-12-17 19:40:46,713 | INFO     | --------------------------------------------------
[2025-12-17 20:41:38] 2025-12-17 19:40:46,713 | INFO     | 
[2025-12-17 20:41:38] 2025-12-17 19:40:46,713 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-12-17 20:41:38] 2025-12-17 19:40:46,724 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 20:41:38] 2025-12-17 19:40:46,724 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 20:41:38] 2025-12-17 19:40:46,724 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 20:41:38] 2025-12-17 19:40:46,724 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 20:41:38] 2025-12-17 19:40:46,724 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 20:41:38] 2025-12-17 19:40:46,724 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 20:41:38] 2025-12-17 19:40:46,724 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 20:41:38] 2025-12-17 19:40:46,724 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 20:41:38] 2025-12-17 19:40:46,724 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 20:41:38] 2025-12-17 19:40:46,724 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 20:41:38] 2025-12-17 19:40:46,724 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 20:41:38] 2025-12-17 19:40:46,725 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 20:41:38] 2025-12-17 19:40:46,725 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 20:41:38] 2025-12-17 19:40:46,725 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 20:41:38] 2025-12-17 19:40:46,725 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 20:41:38] 2025-12-17 19:40:46,725 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 20:41:38] 2025-12-17 19:40:46,725 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 20:41:38] 2025-12-17 19:40:46,725 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 20:41:38] 2025-12-17 19:40:46,725 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 20:41:38] 2025-12-17 19:40:46,725 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 20:41:38] 2025-12-17 19:40:46,725 | INFO     | job 6931012451 has completed (purged errors)
[2025-12-17 20:41:38] 2025-12-17 19:40:46,725 | INFO     | overall cleanup function is called
[2025-12-17 20:41:38] 2025-12-17 19:40:47,731 | INFO     | --- collectZombieJob: --- 10, [1712203]
[2025-12-17 20:41:38] 2025-12-17 19:40:47,732 | INFO     | zombie collector waiting for pid 1712203
[2025-12-17 20:41:38] 2025-12-17 19:40:47,732 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 20:41:38] 2025-12-17 19:40:47,732 | INFO     | collected zombie processes
[2025-12-17 20:41:38] 2025-12-17 19:40:47,732 | INFO     | will attempt to kill all subprocesses of pid=1712203
[2025-12-17 20:41:38] 2025-12-17 19:40:47,779 | INFO     | process IDs to be killed: [1712203] (in reverse order)
[2025-12-17 20:41:38] 2025-12-17 19:40:47,804 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 20:41:38] 2025-12-17 19:40:47,804 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 20:41:38] 2025-12-17 19:40:47,806 | INFO     | did not find any defunct processes belonging to 1712203
[2025-12-17 20:41:38] 2025-12-17 19:40:47,807 | INFO     | did not find any defunct processes belonging to 1712203
[2025-12-17 20:41:38] 2025-12-17 19:40:47,807 | INFO     | ready for new job
[2025-12-17 20:41:38] 2025-12-17 19:40:47,807 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 20:41:38] 2025-12-17 19:40:47,808 | INFO     | ***************************************
[2025-12-17 20:41:38] 2025-12-17 19:40:47,808 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 20:41:38] 2025-12-17 19:40:47,808 | INFO     | ***************************************
[2025-12-17 20:41:38] 2025-12-17 19:40:47,808 | INFO     | 
[2025-12-17 20:41:38] 2025-12-17 19:40:47,808 | INFO     | architecture information:
[2025-12-17 20:41:38] 2025-12-17 19:40:47,808 | INFO     | executing command: cat /etc/os-release
[2025-12-17 20:41:38] 2025-12-17 19:40:47,816 | INFO     | cat /etc/os-release:
[2025-12-17 20:41:38] NAME="CentOS Linux"
[2025-12-17 20:41:38] VERSION="7 (Core)"
[2025-12-17 20:41:38] ID="centos"
[2025-12-17 20:41:38] ID_LIKE="rhel fedora"
[2025-12-17 20:41:38] VERSION_ID="7"
[2025-12-17 20:41:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 20:41:38] ANSI_COLOR="0;31"
[2025-12-17 20:41:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 20:41:38] HOME_URL="https://www.centos.org/"
[2025-12-17 20:41:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 20:41:38] 
[2025-12-17 20:41:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 20:41:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 20:41:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 20:41:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 20:41:38] 
[2025-12-17 20:41:38] 2025-12-17 19:40:47,817 | INFO     | ***************************************
[2025-12-17 20:41:38] 2025-12-17 19:40:48,320 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-17 20:41:38] 2025-12-17 19:40:48,332 | INFO     | sufficient remaining disk space (345008766976 B)
[2025-12-17 20:41:38] 2025-12-17 19:40:48,332 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 20:41:38] 2025-12-17 19:40:48,333 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 20:41:38] 2025-12-17 19:40:48,333 | INFO     | update_server=False
[2025-12-17 20:41:38] 2025-12-17 19:40:48,333 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 20:41:38] 2025-12-17 19:40:48,333 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 20:41:38] 2025-12-17 19:40:48,403 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-17 20:41:38] 2025-12-17 19:40:48,403 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-17 20:41:38] 2025-12-17 19:40:48,403 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 20:41:38] 2025-12-17 19:40:48,403 | INFO     | will abort loop
[2025-12-17 20:41:38] 2025-12-17 19:40:48,435 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 20:41:38] 2025-12-17 19:40:48,498 | INFO     | all job control threads have been joined
[2025-12-17 20:41:38] 2025-12-17 19:40:49,201 | INFO     | all data control threads have been joined
[2025-12-17 20:41:38] 2025-12-17 19:40:49,338 | INFO     | [job] queue monitor thread has finished
[2025-12-17 20:41:38] 2025-12-17 19:40:49,339 | INFO     | [job] retrieve thread has finished
[2025-12-17 20:41:38] 2025-12-17 19:40:49,406 | INFO     | [job] job monitor thread has finished
[2025-12-17 20:41:38] 2025-12-17 19:40:49,475 | INFO     | [data] copytool_in thread has finished
[2025-12-17 20:41:38] 2025-12-17 19:40:49,504 | INFO     | [job] control thread has finished
[2025-12-17 20:41:38] 2025-12-17 19:40:49,632 | INFO     | all payload control threads have been joined
[2025-12-17 20:41:38] 2025-12-17 19:40:49,891 | INFO     | [payload] failed_post thread has finished
[2025-12-17 20:41:38] 2025-12-17 19:40:49,946 | INFO     | [job] validate thread has finished
[2025-12-17 20:41:38] 2025-12-17 19:40:50,008 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 20:41:38] 2025-12-17 19:40:50,032 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 20:41:38] 2025-12-17 19:40:50,138 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 20:41:38] 2025-12-17 19:40:50,207 | INFO     | [data] control thread has finished
[2025-12-17 20:41:38] 2025-12-17 19:40:50,438 | INFO     | [data] copytool_out thread has finished
[2025-12-17 20:41:38] 2025-12-17 19:40:50,637 | INFO     | [payload] control thread has finished
[2025-12-17 20:41:38] 2025-12-17 19:40:50,770 | INFO     | [payload] validate_post thread has finished
[2025-12-17 20:41:38] 2025-12-17 19:40:50,958 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 20:41:38] 2025-12-17 19:40:54,965 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 20:41:38] 2025-12-17 19:40:58,668 | INFO     | job.realtimelogging is not enabled
[2025-12-17 20:41:38] 2025-12-17 19:40:59,674 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 20:41:38] 2025-12-17 19:41:19,100 | INFO     | PID=1705760 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-17 20:41:38] 2025-12-17 19:41:19,100 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 20:41:38] 2025-12-17 19:41:19,100 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 20:41:38] 2025-12-17 19:41:19,100 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 20:41:38] 2025-12-17 19:41:31,300 | INFO     | [monitor] cgroup control has ended
[2025-12-17 20:41:38] 2025-12-17 19:41:33,332 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140169556502336)>', '<ExcThread(monitor, started 140168933664512)>']
[2025-12-17 20:41:38] 2025-12-17 19:41:34,175 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 20:41:38] 2025-12-17 19:41:34,175 | INFO     | [monitor] control thread has ended
[2025-12-17 20:41:38] 2025-12-17 19:41:38,358 | INFO     | all workflow threads have been joined
[2025-12-17 20:41:38] 2025-12-17 19:41:38,358 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 20:41:38] 2025-12-17 19:41:38,358 | INFO     | traces error code: 0
[2025-12-17 20:41:38] 2025-12-17 19:41:38,358 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 20:41:38] 2025-12-17 19:41:38,409 [wrapper] ==== pilot stdout END ====
[2025-12-17 20:41:38] 2025-12-17 19:41:38,411 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 20:41:38] 2025-12-17 19:41:38,413 [wrapper] pilotpid: 1705760
[2025-12-17 20:41:38] 2025-12-17 19:41:38,415 [wrapper] Pilot exit status: 0
[2025-12-17 20:41:38] 2025-12-17 19:41:38,422 [wrapper] pandaids: 6931012451
[2025-12-17 20:41:38] 2025-12-17 19:41:38,439 [wrapper] cleanup supervisor_pilot 1724075 1705761
[2025-12-17 20:41:38] 2025-12-17 19:41:38,442 [wrapper] Test setup, not cleaning
[2025-12-17 20:41:38] 2025-12-17 19:41:38,444 [wrapper] apfmon messages muted
[2025-12-17 20:41:38] 2025-12-17 19:41:38,446 [wrapper] ==== wrapper stdout END ====
[2025-12-17 20:41:38] 2025-12-17 19:41:38,448 [wrapper] ==== wrapper stderr END ====
[2025-12-17 20:41:38]  *** Error codes and diagnostics ***
[2025-12-17 20:41:38]     "exeErrorCode": 0,
[2025-12-17 20:41:38]     "exeErrorDiag": "",
[2025-12-17 20:41:38]     "pilotErrorCode": 0,
[2025-12-17 20:41:38]     "pilotErrorDiag": "",
[2025-12-17 20:41:38]  *** Listing of results directory ***
[2025-12-17 20:41:38] total 335192
[2025-12-17 20:41:38] -rw-r--r-- 1 boinc boinc    579449 Dec 16 10:01 pilot3.tar.gz
[2025-12-17 20:41:38] -rwx------ 1 boinc boinc     36322 Dec 16 10:01 runpilot2-wrapper.sh
[2025-12-17 20:41:38] -rw-r--r-- 1 boinc boinc      5112 Dec 16 10:02 queuedata.json
[2025-12-17 20:41:38] -rw-r--r-- 1 boinc boinc       100 Dec 17 19:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 20:41:38] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 19:16 run_atlas
[2025-12-17 20:41:38] -rw-r--r-- 1 boinc boinc       105 Dec 17 19:16 job.xml
[2025-12-17 20:41:38] -rw-r--r-- 2 boinc boinc 192266660 Dec 17 19:16 EVNT.47886929._000254.pool.root.1
[2025-12-17 20:41:38] -rw-r--r-- 2 boinc boinc    592395 Dec 17 19:16 input.tar.gz
[2025-12-17 20:41:38] -rw-r--r-- 2 boinc boinc     15847 Dec 17 19:16 start_atlas.sh
[2025-12-17 20:41:38] drwxrwx--x 2 boinc boinc      4096 Dec 17 19:16 shared
[2025-12-17 20:41:38] -rw-r--r-- 1 boinc boinc         0 Dec 17 19:16 boinc_setup_complete
[2025-12-17 20:41:38] -rw-r--r-- 1 boinc boinc      6440 Dec 17 19:16 init_data.xml
[2025-12-17 20:41:38] -rw-r--r-- 1 boinc boinc         0 Dec 17 19:16 boinc_lockfile
[2025-12-17 20:41:38] -rw-r--r-- 1 boinc boinc      2513 Dec 17 19:16 pandaJob.out
[2025-12-17 20:41:38] -rw------- 1 boinc boinc    988136 Dec 17 19:16 agis_schedconf.cvmfs.json
[2025-12-17 20:41:38] -rw------- 1 boinc boinc   1516240 Dec 17 19:16 agis_ddmendpoints.agis.ALL.json
[2025-12-17 20:41:38] drwx------ 5 boinc boinc      4096 Dec 17 19:16 pilot3
[2025-12-17 20:41:38] -rw------- 1 boinc boinc 145025871 Dec 17 20:40 HITS.47886933._006575.pool.root.1
[2025-12-17 20:41:38] -rw-r--r-- 1 boinc boinc       529 Dec 17 20:40 boinc_task_state.xml
[2025-12-17 20:41:38] -rw------- 1 boinc boinc      1020 Dec 17 20:40 memory_monitor_summary.json
[2025-12-17 20:41:38] -rw------- 1 boinc boinc    269419 Dec 17 20:40 log.47886933._006575.job.log.tgz.1
[2025-12-17 20:41:38] -rw------- 1 boinc boinc      7767 Dec 17 20:40 heartbeat.json
[2025-12-17 20:41:38] -rw-r--r-- 1 boinc boinc        27 Dec 17 20:41 wrapper_checkpoint.txt
[2025-12-17 20:41:38] -rw-r--r-- 1 boinc boinc      8192 Dec 17 20:41 boinc_mmap_file
[2025-12-17 20:41:38] -rw------- 1 boinc boinc        95 Dec 17 20:41 pilot_heartbeat.json
[2025-12-17 20:41:38] -rw------- 1 boinc boinc      5010 Dec 17 20:41 pilotlog.txt
[2025-12-17 20:41:38] -rw------- 1 boinc boinc    744040 Dec 17 20:41 log.47886933._006575.job.log.1
[2025-12-17 20:41:38] -rw------- 1 boinc boinc       357 Dec 17 20:41 output.list
[2025-12-17 20:41:38] -rw-r--r-- 1 boinc boinc       620 Dec 17 20:41 runtime_log
[2025-12-17 20:41:38] -rw------- 1 boinc boinc   1034240 Dec 17 20:41 result.tar.gz
[2025-12-17 20:41:38] -rw------- 1 boinc boinc       660 Dec 17 20:41 u47NDmH7fp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCnZKDmebRInn.diag
[2025-12-17 20:41:38] -rw-r--r-- 1 boinc boinc      8907 Dec 17 20:41 runtime_log.err
[2025-12-17 20:41:38] -rw-r--r-- 1 boinc boinc     21882 Dec 17 20:41 stderr.txt
[2025-12-17 20:41:38] HITS file was successfully produced:
[2025-12-17 20:41:38] -rw------- 1 boinc boinc 145025871 Dec 17 20:40 shared/HITS.pool.root.1
[2025-12-17 20:41:38]  *** Contents of shared directory: ***
[2025-12-17 20:41:38] total 331008
[2025-12-17 20:41:38] -rw-r--r-- 2 boinc boinc 192266660 Dec 17 19:16 ATLAS.root_0
[2025-12-17 20:41:38] -rw-r--r-- 2 boinc boinc    592395 Dec 17 19:16 input.tar.gz
[2025-12-17 20:41:38] -rw-r--r-- 2 boinc boinc     15847 Dec 17 19:16 start_atlas.sh
[2025-12-17 20:41:38] -rw------- 1 boinc boinc 145025871 Dec 17 20:40 HITS.pool.root.1
[2025-12-17 20:41:38] -rw------- 1 boinc boinc   1034240 Dec 17 20:41 result.tar.gz
20:41:40 (1702043): run_atlas exited; CPU time 14568.009537
20:41:40 (1702043): called boinc_finish(0)

</stderr_txt>
]]>

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