Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:02:03 (488397): wrapper (7.7.26015): starting
16:02:03 (488397): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 16:02:03] Arguments: --nthreads 8
[2025-12-16 16:02:03] Threads: 8
[2025-12-16 16:02:03] Checking for CVMFS
[2025-12-16 16:02:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 16:02:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 16:02:03] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 16:02:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 16:02:04] 2.13.3.0 14106 59314 219808 154087 2 874 38761542 40960000 36971 16776704 0 805711995 99.730 569041563 46585 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-16 16:02:04] CVMFS is ok
[2025-12-16 16:02:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 16:02:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 16:02:04] Further information can be found at the LHC@home message board.
[2025-12-16 16:02:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 16:02:04] Checking for apptainer binary...
[2025-12-16 16:02:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 16:02:04] Running /usr/bin/apptainer --version
[2025-12-16 16:02:04] apptainer version 1.4.5-2.el9
[2025-12-16 16:02:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 16:02:04] c8-7-5.aglt2.org
[2025-12-16 16:02:04] apptainer works
[2025-12-16 16:02:05] Set ATHENA_PROC_NUMBER=8
[2025-12-16 16:02:05] Set ATHENA_CORE_NUMBER=8
[2025-12-16 16:02:05] Starting ATLAS job with PandaID=6930227822
[2025-12-16 16:02:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 17:49:12]  *** The last 200 lines of the pilot log: ***
[2025-12-16 17:49:12] 2025-12-16 22:48:32,838 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 17:49:12] 2025-12-16 22:48:33,545 | INFO     | time since job start (6360s) is within the limit (174528.0s)
[2025-12-16 17:49:12] 2025-12-16 22:48:35,347 | INFO     | monitor loop #425: job 0:6930227822 is in state 'finished'
[2025-12-16 17:49:12] 2025-12-16 22:48:35,347 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 17:49:12] 2025-12-16 22:48:35,923 | INFO     | PID=507867 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-16 17:49:12] 2025-12-16 22:48:35,923 | INFO     | .. there are 37 such processes running
[2025-12-16 17:49:12] 2025-12-16 22:48:36,924 | INFO     | time since job start (6363s) is within the limit (174528.0s)
[2025-12-16 17:49:12] 2025-12-16 22:48:37,852 | INFO     | monitor loop #426: job 0:6930227822 is in state 'finished'
[2025-12-16 17:49:12] 2025-12-16 22:48:37,852 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 17:49:12] 2025-12-16 22:48:37,959 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-16 17:49:12] 2025-12-16 22:48:37,967 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3794.4445468749996
[2025-12-16 17:49:12] 2025-12-16 22:48:37,996 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6930227822/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 17:49:12] 2025-12-16 22:48:37,996 | INFO     | extracted standard info from prmon json
[2025-12-16 17:49:12] 2025-12-16 22:48:37,996 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 17:49:12] 2025-12-16 22:48:37,996 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 17:49:12] 2025-12-16 22:48:37,996 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 17:49:12] 2025-12-16 22:48:37,996 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 17:49:12] 2025-12-16 22:48:37,997 | INFO     | fitting pss+swap vs Time
[2025-12-16 17:49:12] 2025-12-16 22:48:38,002 | INFO     | sum of square deviations: 338822067.65048474
[2025-12-16 17:49:12] 2025-12-16 22:48:38,002 | INFO     | sum of deviations: 18203026376.71845
[2025-12-16 17:49:12] 2025-12-16 22:48:38,002 | INFO     | mean x: 1765922118.0582523
[2025-12-16 17:49:12] 2025-12-16 22:48:38,002 | INFO     | mean y: 2442481.213592233
[2025-12-16 17:49:12] 2025-12-16 22:48:38,002 | INFO     | intersect: -94870737170.72249
[2025-12-16 17:49:12] 2025-12-16 22:48:38,002 | INFO     | chi2: 1.8377910751413544
[2025-12-16 17:49:12] 2025-12-16 22:48:38,002 | INFO     | sum of square deviations: 291824400.3367351
[2025-12-16 17:49:12] 2025-12-16 22:48:38,007 | INFO     | sum of deviations: 17264959862.17348
[2025-12-16 17:49:12] 2025-12-16 22:48:38,007 | INFO     | mean x: 1765921965.5408163
[2025-12-16 17:49:12] 2025-12-16 22:48:38,007 | INFO     | mean y: 2439434.5816326533
[2025-12-16 17:49:12] 2025-12-16 22:48:38,007 | INFO     | intersect: -104473306320.78372
[2025-12-16 17:49:12] 2025-12-16 22:48:38,007 | INFO     | chi2: 1.8418718919631247
[2025-12-16 17:49:12] 2025-12-16 22:48:38,007 | INFO     | current chi2=1.8418718919631247 (change=-0.22205009464726166 %)
[2025-12-16 17:49:12] 2025-12-16 22:48:38,007 | INFO     | right removable region: 97
[2025-12-16 17:49:12] 2025-12-16 22:48:38,007 | INFO     | sum of square deviations: 291833310.1326538
[2025-12-16 17:49:12] 2025-12-16 22:48:38,007 | INFO     | sum of deviations: -49519882.81632657
[2025-12-16 17:49:12] 2025-12-16 22:48:38,007 | INFO     | mean x: 1765922270.5612245
[2025-12-16 17:49:12] 2025-12-16 22:48:38,007 | INFO     | mean y: 2500612.4693877553
[2025-12-16 17:49:12] 2025-12-16 22:48:38,007 | INFO     | intersect: 302152026.01496035
[2025-12-16 17:49:12] 2025-12-16 22:48:38,007 | INFO     | chi2: 0.0028853204025797046
[2025-12-16 17:49:12] 2025-12-16 22:48:38,008 | INFO     | current chi2=0.0028853204025797046 (change=99.84300063039768 %)
[2025-12-16 17:49:12] 2025-12-16 22:48:38,008 | INFO     | sum of square deviations: 249402777.61290315
[2025-12-16 17:49:12] 2025-12-16 22:48:38,008 | INFO     | sum of deviations: 257185399.29032257
[2025-12-16 17:49:12] 2025-12-16 22:48:38,008 | INFO     | mean x: 1765922423.064516
[2025-12-16 17:49:12] 2025-12-16 22:48:38,008 | INFO     | mean y: 2499479.4516129033
[2025-12-16 17:49:12] 2025-12-16 22:48:38,008 | INFO     | intersect: -1818528609.4836907
[2025-12-16 17:49:12] 2025-12-16 22:48:38,008 | INFO     | chi2: 0.0021714242892646087
[2025-12-16 17:49:12] 2025-12-16 22:48:38,008 | INFO     | current chi2=0.0021714242892646087 (change=24.742351410152448 %)
[2025-12-16 17:49:12] 2025-12-16 22:48:38,008 | INFO     | left removable region: 20
[2025-12-16 17:49:12] 2025-12-16 22:48:38,008 | INFO     | sum of square deviations: 141547330.8831167
[2025-12-16 17:49:12] 2025-12-16 22:48:38,008 | INFO     | sum of deviations: 552637905.7532468
[2025-12-16 17:49:12] 2025-12-16 22:48:38,008 | INFO     | mean x: 1765922545.038961
[2025-12-16 17:49:12] 2025-12-16 22:48:38,008 | INFO     | mean y: 2497838.4155844157
[2025-12-16 17:49:12] 2025-12-16 22:48:38,009 | INFO     | intersect: -6892126955.4538355
[2025-12-16 17:49:12] 2025-12-16 22:48:38,009 | INFO     | chi2: 8.051112289206088e-05
[2025-12-16 17:49:12] 2025-12-16 22:48:38,009 | INFO     | current memory leak: 3.90 B/s (using 77 data points, chi2=0.00)
[2025-12-16 17:49:12] 2025-12-16 22:48:38,009 | INFO     | could have reported an average CPU frequency of 3799 MHz (7 samples)
[2025-12-16 17:49:12] 2025-12-16 22:48:38,009 | INFO     | ..............................
[2025-12-16 17:49:12] 2025-12-16 22:48:38,009 | INFO     | . Timing measurements:
[2025-12-16 17:49:12] 2025-12-16 22:48:38,009 | INFO     | . get job = 0 s
[2025-12-16 17:49:12] 2025-12-16 22:48:38,009 | INFO     | . initial setup = 3 s
[2025-12-16 17:49:12] 2025-12-16 22:48:38,009 | INFO     | . payload setup = 14 s
[2025-12-16 17:49:12] 2025-12-16 22:48:38,009 | INFO     | . stage-in = 0 s
[2025-12-16 17:49:12] 2025-12-16 22:48:38,009 | INFO     | . payload execution = 6282 s
[2025-12-16 17:49:12] 2025-12-16 22:48:38,009 | INFO     | . stage-out = 2 s
[2025-12-16 17:49:12] 2025-12-16 22:48:38,009 | INFO     | . log creation = 1 s
[2025-12-16 17:49:12] 2025-12-16 22:48:38,009 | INFO     | ..............................
[2025-12-16 17:49:12] 2025-12-16 22:48:38,083 | INFO     | 
[2025-12-16 17:49:12] 2025-12-16 22:48:38,083 | INFO     | job summary report
[2025-12-16 17:49:12] 2025-12-16 22:48:38,083 | INFO     | --------------------------------------------------
[2025-12-16 17:49:12] 2025-12-16 22:48:38,083 | INFO     | PanDA job id: 6930227822
[2025-12-16 17:49:12] 2025-12-16 22:48:38,083 | INFO     | task id: 47898763
[2025-12-16 17:49:12] 2025-12-16 22:48:38,083 | INFO     | errors: (none)
[2025-12-16 17:49:12] 2025-12-16 22:48:38,083 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 17:49:12] 2025-12-16 22:48:38,083 | INFO     | pilot state: finished 
[2025-12-16 17:49:12] 2025-12-16 22:48:38,083 | INFO     | transexitcode: 0
[2025-12-16 17:49:12] 2025-12-16 22:48:38,083 | INFO     | exeerrorcode: 0
[2025-12-16 17:49:12] 2025-12-16 22:48:38,083 | INFO     | exeerrordiag: 
[2025-12-16 17:49:12] 2025-12-16 22:48:38,083 | INFO     | exitcode: 0
[2025-12-16 17:49:12] 2025-12-16 22:48:38,083 | INFO     | exitmsg: OK
[2025-12-16 17:49:12] 2025-12-16 22:48:38,083 | INFO     | cpuconsumptiontime: 31755 s
[2025-12-16 17:49:12] 2025-12-16 22:48:38,083 | INFO     | nevents: 400
[2025-12-16 17:49:12] 2025-12-16 22:48:38,083 | INFO     | neventsw: 0
[2025-12-16 17:49:12] 2025-12-16 22:48:38,083 | INFO     | pid: 534215
[2025-12-16 17:49:12] 2025-12-16 22:48:38,083 | INFO     | pgrp: 534215
[2025-12-16 17:49:12] 2025-12-16 22:48:38,083 | INFO     | corecount: 8
[2025-12-16 17:49:12] 2025-12-16 22:48:38,083 | INFO     | event service: False
[2025-12-16 17:49:12] 2025-12-16 22:48:38,083 | INFO     | sizes: {0: 2283787, 1: 2283986, 11: 2284276, 6301: 2311318, 6304: 2320316, 6307: 2320372, 6340: 2320694}
[2025-12-16 17:49:12] 2025-12-16 22:48:38,084 | INFO     | --------------------------------------------------
[2025-12-16 17:49:12] 2025-12-16 22:48:38,084 | INFO     | 
[2025-12-16 17:49:12] 2025-12-16 22:48:38,084 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-16 17:49:12] 2025-12-16 22:48:38,154 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 17:49:12] 2025-12-16 22:48:38,154 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 17:49:12] 2025-12-16 22:48:38,154 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 17:49:12] 2025-12-16 22:48:38,154 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 17:49:12] 2025-12-16 22:48:38,154 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 17:49:12] 2025-12-16 22:48:38,154 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 17:49:12] 2025-12-16 22:48:38,154 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 17:49:12] 2025-12-16 22:48:38,154 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 17:49:12] 2025-12-16 22:48:38,154 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 17:49:12] 2025-12-16 22:48:38,155 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 17:49:12] 2025-12-16 22:48:38,155 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 17:49:12] 2025-12-16 22:48:38,155 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 17:49:12] 2025-12-16 22:48:38,155 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 17:49:12] 2025-12-16 22:48:38,155 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 17:49:12] 2025-12-16 22:48:38,155 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 17:49:12] 2025-12-16 22:48:38,155 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 17:49:12] 2025-12-16 22:48:38,155 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 17:49:12] 2025-12-16 22:48:38,156 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 17:49:12] 2025-12-16 22:48:38,156 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 17:49:12] 2025-12-16 22:48:38,156 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 17:49:12] 2025-12-16 22:48:38,156 | INFO     | job 6930227822 has completed (purged errors)
[2025-12-16 17:49:12] 2025-12-16 22:48:38,156 | INFO     | overall cleanup function is called
[2025-12-16 17:49:12] 2025-12-16 22:48:39,165 | INFO     | --- collectZombieJob: --- 10, [534215]
[2025-12-16 17:49:12] 2025-12-16 22:48:39,165 | INFO     | zombie collector waiting for pid 534215
[2025-12-16 17:49:12] 2025-12-16 22:48:39,165 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 17:49:12] 2025-12-16 22:48:39,165 | INFO     | collected zombie processes
[2025-12-16 17:49:12] 2025-12-16 22:48:39,165 | INFO     | will attempt to kill all subprocesses of pid=534215
[2025-12-16 17:49:12] 2025-12-16 22:48:40,094 | INFO     | process IDs to be killed: [534215] (in reverse order)
[2025-12-16 17:49:12] 2025-12-16 22:48:40,461 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 17:49:12] 2025-12-16 22:48:40,462 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 17:49:12] 2025-12-16 22:48:40,486 | INFO     | did not find any defunct processes belonging to 534215
[2025-12-16 17:49:12] 2025-12-16 22:48:40,530 | INFO     | did not find any defunct processes belonging to 534215
[2025-12-16 17:49:12] 2025-12-16 22:48:40,530 | INFO     | ready for new job
[2025-12-16 17:49:12] 2025-12-16 22:48:40,530 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 17:49:12] 2025-12-16 22:48:40,533 | INFO     | ***************************************
[2025-12-16 17:49:12] 2025-12-16 22:48:40,535 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 17:49:12] 2025-12-16 22:48:40,535 | INFO     | ***************************************
[2025-12-16 17:49:12] 2025-12-16 22:48:40,535 | INFO     | 
[2025-12-16 17:49:12] 2025-12-16 22:48:40,544 | INFO     | architecture information:
[2025-12-16 17:49:12] 2025-12-16 22:48:40,551 | INFO     | executing command: cat /etc/os-release
[2025-12-16 17:49:12] 2025-12-16 22:48:40,621 | INFO     | cat /etc/os-release:
[2025-12-16 17:49:12] NAME="CentOS Linux"
[2025-12-16 17:49:12] VERSION="7 (Core)"
[2025-12-16 17:49:12] ID="centos"
[2025-12-16 17:49:12] ID_LIKE="rhel fedora"
[2025-12-16 17:49:12] VERSION_ID="7"
[2025-12-16 17:49:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 17:49:12] ANSI_COLOR="0;31"
[2025-12-16 17:49:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 17:49:12] HOME_URL="https://www.centos.org/"
[2025-12-16 17:49:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 17:49:12] 
[2025-12-16 17:49:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 17:49:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 17:49:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 17:49:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 17:49:12] 
[2025-12-16 17:49:12] 2025-12-16 22:48:40,621 | INFO     | ***************************************
[2025-12-16 17:49:12] 2025-12-16 22:48:41,124 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-16 17:49:12] 2025-12-16 22:48:41,160 | INFO     | sufficient remaining disk space (170064347136 B)
[2025-12-16 17:49:12] 2025-12-16 22:48:41,160 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 17:49:12] 2025-12-16 22:48:41,161 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 17:49:12] 2025-12-16 22:48:41,161 | INFO     | update_server=False
[2025-12-16 17:49:12] 2025-12-16 22:48:41,161 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 17:49:12] 2025-12-16 22:48:41,375 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 17:49:12] 2025-12-16 22:48:41,375 | INFO     | aborting loop
[2025-12-16 17:49:12] 2025-12-16 22:48:41,794 | INFO     | all data control threads have been joined
[2025-12-16 17:49:12] 2025-12-16 22:48:41,858 | INFO     | all payload control threads have been joined
[2025-12-16 17:49:12] 2025-12-16 22:48:41,874 | INFO     | all job control threads have been joined
[2025-12-16 17:49:12] 2025-12-16 22:48:42,160 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 17:49:12] 2025-12-16 22:48:42,167 | INFO     | [job] retrieve thread has finished
[2025-12-16 17:49:12] 2025-12-16 22:48:42,168 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 17:49:12] 2025-12-16 22:48:42,183 | INFO     | [data] copytool_in thread has finished
[2025-12-16 17:49:12] 2025-12-16 22:48:42,382 | INFO     | [job] job monitor thread has finished
[2025-12-16 17:49:12] 2025-12-16 22:48:42,414 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 17:49:12] 2025-12-16 22:48:42,698 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 17:49:12] 2025-12-16 22:48:42,803 | INFO     | [data] control thread has finished
[2025-12-16 17:49:12] 2025-12-16 22:48:42,864 | INFO     | [payload] control thread has finished
[2025-12-16 17:49:12] 2025-12-16 22:48:42,880 | INFO     | [job] control thread has finished
[2025-12-16 17:49:12] 2025-12-16 22:48:43,097 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 17:49:12] 2025-12-16 22:48:43,146 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 17:49:12] 2025-12-16 22:48:43,533 | INFO     | [job] validate thread has finished
[2025-12-16 17:49:12] 2025-12-16 22:48:43,588 | INFO     | [payload] validate_post thread has finished
[2025-12-16 17:49:12] 2025-12-16 22:48:43,609 | INFO     | [monitor] cgroup control has ended
[2025-12-16 17:49:12] 2025-12-16 22:48:43,643 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 17:49:12] 2025-12-16 22:48:43,661 | INFO     | [payload] failed_post thread has finished
[2025-12-16 17:49:12] 2025-12-16 22:48:44,103 | INFO     | [job] queue monitor thread has finished
[2025-12-16 17:49:12] 2025-12-16 22:48:44,167 | INFO     | [data] copytool_out thread has finished
[2025-12-16 17:49:12] 2025-12-16 22:48:46,428 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 17:49:12] 2025-12-16 22:48:46,952 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139962529310528)>', '<ExcThread(monitor, started 139961886033664)>']
[2025-12-16 17:49:12] 2025-12-16 22:48:51,980 | INFO     | all workflow threads have been joined
[2025-12-16 17:49:12] 2025-12-16 22:48:51,980 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 17:49:12] 2025-12-16 22:48:51,980 | INFO     | traces error code: 0
[2025-12-16 17:49:12] 2025-12-16 22:48:51,980 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 17:49:12] 2025-12-16 22:49:10,745 | INFO     | PID=507867 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-16 17:49:12] 2025-12-16 22:49:10,747 | INFO     | .. there are 37 such processes running
[2025-12-16 17:49:12] 2025-12-16 22:49:10,747 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 17:49:12] 2025-12-16 22:49:10,747 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 17:49:12] 2025-12-16 22:49:10,747 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 17:49:12] 2025-12-16 22:49:10,747 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 17:49:12] 2025-12-16 22:49:10,747 | INFO     | [monitor] control thread has ended
[2025-12-16 17:49:12] 2025-12-16 22:49:10,901 [wrapper] ==== pilot stdout END ====
[2025-12-16 17:49:12] 2025-12-16 22:49:10,905 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 17:49:12] 2025-12-16 22:49:10,927 [wrapper] pilotpid: 507867
[2025-12-16 17:49:12] 2025-12-16 22:49:10,959 [wrapper] Pilot exit status: 0
[2025-12-16 17:49:12] 2025-12-16 22:49:11,028 [wrapper] pandaids: 6930227822
[2025-12-16 17:49:12] 2025-12-16 22:49:11,400 [wrapper] cleanup supervisor_pilot 1104856 507868
[2025-12-16 17:49:12] 2025-12-16 22:49:11,418 [wrapper] Test setup, not cleaning
[2025-12-16 17:49:12] 2025-12-16 22:49:11,445 [wrapper] apfmon messages muted
[2025-12-16 17:49:12] 2025-12-16 22:49:11,470 [wrapper] ==== wrapper stdout END ====
[2025-12-16 17:49:12] 2025-12-16 22:49:11,516 [wrapper] ==== wrapper stderr END ====
[2025-12-16 17:49:12]  *** Error codes and diagnostics ***
[2025-12-16 17:49:12]     "exeErrorCode": 0,
[2025-12-16 17:49:12]     "exeErrorDiag": "",
[2025-12-16 17:49:12]     "pilotErrorCode": 0,
[2025-12-16 17:49:12]     "pilotErrorDiag": "",
[2025-12-16 17:49:12]  *** Listing of results directory ***
[2025-12-16 17:49:12] total 438876
[2025-12-16 17:49:12] -rw-r--r--. 1 boincer umatlas      5112 Dec 15 21:06 queuedata.json
[2025-12-16 17:49:12] -rw-r--r--. 1 boincer umatlas    579449 Dec 15 21:06 pilot3.tar.gz
[2025-12-16 17:49:12] -rwx------. 1 boincer umatlas     36322 Dec 15 21:06 runpilot2-wrapper.sh
[2025-12-16 17:49:12] -rw-r--r--. 1 boincer umatlas       100 Dec 16 16:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 17:49:12] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 16 16:02 run_atlas
[2025-12-16 17:49:12] -rw-r--r--. 1 boincer umatlas       105 Dec 16 16:02 job.xml
[2025-12-16 17:49:12] -rw-r--r--. 2 boincer umatlas 221477438 Dec 16 16:02 EVNT.47898761._000719.pool.root.1
[2025-12-16 17:49:12] -rw-r--r--. 2 boincer umatlas     15847 Dec 16 16:02 start_atlas.sh
[2025-12-16 17:49:12] drwxrwx--x. 2 boincer umatlas      4096 Dec 16 16:02 shared
[2025-12-16 17:49:12] -rw-r--r--. 2 boincer umatlas    592402 Dec 16 16:02 input.tar.gz
[2025-12-16 17:49:12] -rw-r--r--. 1 boincer umatlas         0 Dec 16 16:02 boinc_lockfile
[2025-12-16 17:49:12] -rw-r--r--. 1 boincer umatlas      2508 Dec 16 16:02 pandaJob.out
[2025-12-16 17:49:12] -rw-------. 1 boincer umatlas        57 Dec 16 16:02 setup.sh.local
[2025-12-16 17:49:12] -rw-------. 1 boincer umatlas    987409 Dec 16 16:02 agis_schedconf.cvmfs.json
[2025-12-16 17:49:12] -rw-------. 1 boincer umatlas   1516240 Dec 16 16:02 agis_ddmendpoints.agis.ALL.json
[2025-12-16 17:49:12] drwx------. 5 boincer umatlas      4096 Dec 16 16:02 pilot3
[2025-12-16 17:49:12] -rw-r--r--. 1 boincer umatlas      7171 Dec 16 17:45 init_data.xml
[2025-12-16 17:49:12] -rw-------. 1 boincer umatlas 221592568 Dec 16 17:47 HITS.47898763._018095.pool.root.1
[2025-12-16 17:49:12] -rw-r--r--. 1 boincer umatlas       529 Dec 16 17:47 boinc_task_state.xml
[2025-12-16 17:49:12] -rw-------. 1 boincer umatlas      1056 Dec 16 17:47 memory_monitor_summary.json
[2025-12-16 17:49:12] -rw-------. 1 boincer umatlas    348653 Dec 16 17:48 log.47898763._018095.job.log.tgz.1
[2025-12-16 17:49:12] -rw-------. 1 boincer umatlas        95 Dec 16 17:48 pilot_heartbeat.json
[2025-12-16 17:49:12] -rw-------. 1 boincer umatlas      7786 Dec 16 17:48 heartbeat.json
[2025-12-16 17:49:12] -rw-r--r--. 1 boincer umatlas        27 Dec 16 17:49 wrapper_checkpoint.txt
[2025-12-16 17:49:12] -rw-r--r--. 1 boincer umatlas      8192 Dec 16 17:49 boinc_mmap_file
[2025-12-16 17:49:12] -rw-------. 1 boincer umatlas       822 Dec 16 17:49 pilotlog.txt
[2025-12-16 17:49:12] -rw-------. 1 boincer umatlas    864842 Dec 16 17:49 log.47898763._018095.job.log.1
[2025-12-16 17:49:12] -rw-------. 1 boincer umatlas       357 Dec 16 17:49 output.list
[2025-12-16 17:49:12] -rw-r--r--. 1 boincer umatlas       620 Dec 16 17:49 runtime_log
[2025-12-16 17:49:12] -rw-------. 1 boincer umatlas   1228800 Dec 16 17:49 result.tar.gz
[2025-12-16 17:49:12] -rw-r--r--. 1 boincer umatlas      9332 Dec 16 17:49 runtime_log.err
[2025-12-16 17:49:12] -rw-------. 1 boincer umatlas       654 Dec 16 17:49 PQkMDmZdZp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmB3YKDmAFNBvm.diag
[2025-12-16 17:49:12] -rw-r--r--. 1 boincer umatlas     21482 Dec 16 17:49 stderr.txt
[2025-12-16 17:49:12] HITS file was successfully produced:
[2025-12-16 17:49:12] -rw-------. 1 boincer umatlas 221592568 Dec 16 17:47 shared/HITS.pool.root.1
[2025-12-16 17:49:12]  *** Contents of shared directory: ***
[2025-12-16 17:49:12] total 434492
[2025-12-16 17:49:12] -rw-r--r--. 2 boincer umatlas 221477438 Dec 16 16:02 ATLAS.root_0
[2025-12-16 17:49:12] -rw-r--r--. 2 boincer umatlas     15847 Dec 16 16:02 start_atlas.sh
[2025-12-16 17:49:12] -rw-r--r--. 2 boincer umatlas    592402 Dec 16 16:02 input.tar.gz
[2025-12-16 17:49:12] -rw-------. 1 boincer umatlas 221592568 Dec 16 17:47 HITS.pool.root.1
[2025-12-16 17:49:12] -rw-------. 1 boincer umatlas   1228800 Dec 16 17:49 result.tar.gz
17:49:13 (488397): run_atlas exited; CPU time 31921.960133
17:49:13 (488397): called boinc_finish(0)

</stderr_txt>
]]>

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