Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:11:52 (231812): wrapper (7.7.26015): starting
17:11:52 (231812): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 17:11:52] Arguments: --nthreads 8
[2025-12-16 17:11:52] Threads: 8
[2025-12-16 17:11:52] Checking for CVMFS
[2025-12-16 17:11:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 17:11:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 17:11:53] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 17:11:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 17:11:54] 2.13.3.0 12601 59434 382924 154088 1 733 24423358 32935936 31520 16776704 0 279674242 99.459 377461001 32820 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-16 17:11:54] CVMFS is ok
[2025-12-16 17:11:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 17:11:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 17:11:54] Further information can be found at the LHC@home message board.
[2025-12-16 17:11:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 17:11:54] Checking for apptainer binary...
[2025-12-16 17:11:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 17:11:54] Running /usr/bin/apptainer --version
[2025-12-16 17:11:54] apptainer version 1.4.5-2.el9
[2025-12-16 17:11:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 17:11:55] c6-12-27-4.aglt2.org
[2025-12-16 17:11:55] apptainer works
[2025-12-16 17:11:55] Set ATHENA_PROC_NUMBER=8
[2025-12-16 17:11:55] Set ATHENA_CORE_NUMBER=8
[2025-12-16 17:11:55] Starting ATLAS job with PandaID=6931013104
[2025-12-16 17:11:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 22:02:54]  *** The last 200 lines of the pilot log: ***
[2025-12-16 22:02:54] 2025-12-17 03:01:55,622 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 22:02:54] 2025-12-17 03:01:57,370 | INFO     | time since job start (17323s) is within the limit (174528.0s)
[2025-12-16 22:02:54] 2025-12-17 03:01:58,142 | INFO     | monitor loop #1045: job 0:6931013104 is in state 'finished'
[2025-12-16 22:02:54] 2025-12-17 03:01:58,142 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 22:02:54] 2025-12-17 03:01:59,380 | INFO     | time since job start (17325s) is within the limit (174528.0s)
[2025-12-16 22:02:54] 2025-12-17 03:02:00,550 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-16 22:02:54] 2025-12-17 03:02:00,632 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2697.183270833333
[2025-12-16 22:02:54] 2025-12-17 03:02:00,651 | INFO     | monitor loop #1046: job 0:6931013104 is in state 'finished'
[2025-12-16 22:02:54] 2025-12-17 03:02:00,651 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 22:02:54] 2025-12-17 03:02:00,698 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6931013104/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 22:02:54] 2025-12-17 03:02:00,698 | INFO     | extracted standard info from prmon json
[2025-12-16 22:02:54] 2025-12-17 03:02:00,699 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 22:02:54] 2025-12-17 03:02:00,699 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 22:02:54] 2025-12-17 03:02:00,699 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 22:02:54] 2025-12-17 03:02:00,699 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 22:02:54] 2025-12-17 03:02:00,705 | INFO     | fitting pss+swap vs Time
[2025-12-16 22:02:54] 2025-12-17 03:02:00,705 | INFO     | sum of square deviations: 6880009006.498179
[2025-12-16 22:02:54] 2025-12-17 03:02:00,708 | INFO     | sum of deviations: 38141963167.91097
[2025-12-16 22:02:54] 2025-12-17 03:02:00,708 | INFO     | mean x: 1765931888.2348754
[2025-12-16 22:02:54] 2025-12-17 03:02:00,708 | INFO     | mean y: 2496592.743772242
[2025-12-16 22:02:54] 2025-12-17 03:02:00,708 | INFO     | intersect: -9787622718.797264
[2025-12-16 22:02:54] 2025-12-17 03:02:00,709 | INFO     | chi2: 4.62196364030216
[2025-12-16 22:02:54] 2025-12-17 03:02:00,709 | INFO     | sum of square deviations: 6519242683.692011
[2025-12-16 22:02:54] 2025-12-17 03:02:00,714 | INFO     | sum of deviations: 56363576294.03611
[2025-12-16 22:02:54] 2025-12-17 03:02:00,715 | INFO     | mean x: 1765931735.7355072
[2025-12-16 22:02:54] 2025-12-17 03:02:00,715 | INFO     | mean y: 2504180.384057971
[2025-12-16 22:02:54] 2025-12-17 03:02:00,715 | INFO     | intersect: -15265255120.274336
[2025-12-16 22:02:54] 2025-12-17 03:02:00,715 | INFO     | chi2: 3.8666584432170548
[2025-12-16 22:02:54] 2025-12-17 03:02:00,716 | INFO     | current chi2=3.8666584432170548 (change=16.34165164128654 %)
[2025-12-16 22:02:54] 2025-12-17 03:02:00,716 | INFO     | right removable region: 275
[2025-12-16 22:02:54] 2025-12-17 03:02:00,716 | INFO     | sum of square deviations: 6519219321.217384
[2025-12-16 22:02:54] 2025-12-17 03:02:00,722 | INFO     | sum of deviations: -42965881411.26083
[2025-12-16 22:02:54] 2025-12-17 03:02:00,723 | INFO     | mean x: 1765932040.7391305
[2025-12-16 22:02:54] 2025-12-17 03:02:00,723 | INFO     | mean y: 2530796.9963768115
[2025-12-16 22:02:54] 2025-12-17 03:02:00,723 | INFO     | intersect: 11641167711.051697
[2025-12-16 22:02:54] 2025-12-17 03:02:00,724 | INFO     | chi2: 1.3976996231035512
[2025-12-16 22:02:54] 2025-12-17 03:02:00,724 | INFO     | current chi2=1.3976996231035512 (change=69.75961448688123 %)
[2025-12-16 22:02:54] 2025-12-17 03:02:00,724 | INFO     | sum of square deviations: 6171267085.926185
[2025-12-16 22:02:54] 2025-12-17 03:02:00,730 | INFO     | sum of deviations: -66366913972.07007
[2025-12-16 22:02:54] 2025-12-17 03:02:00,731 | INFO     | mean x: 1765932193.2435424
[2025-12-16 22:02:54] 2025-12-17 03:02:00,731 | INFO     | mean y: 2541027.5313653136
[2025-12-16 22:02:54] 2025-12-17 03:02:00,731 | INFO     | intersect: 18993692814.946487
[2025-12-16 22:02:54] 2025-12-17 03:02:00,731 | INFO     | chi2: 1.0872898213353368
[2025-12-16 22:02:54] 2025-12-17 03:02:00,731 | INFO     | current chi2=1.0872898213353368 (change=22.208620266989733 %)
[2025-12-16 22:02:54] 2025-12-17 03:02:00,731 | INFO     | left removable region: 20
[2025-12-16 22:02:54] 2025-12-17 03:02:00,732 | INFO     | sum of square deviations: 5141476062.407869
[2025-12-16 22:02:54] 2025-12-17 03:02:00,738 | INFO     | sum of deviations: -51157386464.913704
[2025-12-16 22:02:54] 2025-12-17 03:02:00,738 | INFO     | mean x: 1765932315.2392156
[2025-12-16 22:02:54] 2025-12-17 03:02:00,738 | INFO     | mean y: 2551804.031372549
[2025-12-16 22:02:54] 2025-12-17 03:02:00,738 | INFO     | intersect: 17573475177.98245
[2025-12-16 22:02:54] 2025-12-17 03:02:00,739 | INFO     | chi2: 0.217177063235407
[2025-12-16 22:02:54] 2025-12-17 03:02:00,739 | INFO     | current memory leak: -9.95 B/s (using 255 data points, chi2=0.22)
[2025-12-16 22:02:54] 2025-12-17 03:02:00,740 | INFO     | could have reported an average CPU frequency of 2661 MHz (13 samples)
[2025-12-16 22:02:54] 2025-12-17 03:02:00,740 | INFO     | ..............................
[2025-12-16 22:02:54] 2025-12-17 03:02:00,740 | INFO     | . Timing measurements:
[2025-12-16 22:02:54] 2025-12-17 03:02:00,740 | INFO     | . get job = 0 s
[2025-12-16 22:02:54] 2025-12-17 03:02:00,740 | INFO     | . initial setup = 10 s
[2025-12-16 22:02:54] 2025-12-17 03:02:00,740 | INFO     | . payload setup = 42 s
[2025-12-16 22:02:54] 2025-12-17 03:02:00,740 | INFO     | . stage-in = 0 s
[2025-12-16 22:02:54] 2025-12-17 03:02:00,740 | INFO     | . payload execution = 17161 s
[2025-12-16 22:02:54] 2025-12-17 03:02:00,740 | INFO     | . stage-out = 6 s
[2025-12-16 22:02:54] 2025-12-17 03:02:00,741 | INFO     | . log creation = 2 s
[2025-12-16 22:02:54] 2025-12-17 03:02:00,741 | INFO     | ..............................
[2025-12-16 22:02:54] 2025-12-17 03:02:01,352 | INFO     | 
[2025-12-16 22:02:54] 2025-12-17 03:02:01,352 | INFO     | job summary report
[2025-12-16 22:02:54] 2025-12-17 03:02:01,352 | INFO     | --------------------------------------------------
[2025-12-16 22:02:54] 2025-12-17 03:02:01,352 | INFO     | PanDA job id: 6931013104
[2025-12-16 22:02:54] 2025-12-17 03:02:01,352 | INFO     | task id: 47898763
[2025-12-16 22:02:54] 2025-12-17 03:02:01,353 | INFO     | errors: (none)
[2025-12-16 22:02:54] 2025-12-17 03:02:01,353 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 22:02:54] 2025-12-17 03:02:01,353 | INFO     | pilot state: finished 
[2025-12-16 22:02:54] 2025-12-17 03:02:01,353 | INFO     | transexitcode: 0
[2025-12-16 22:02:54] 2025-12-17 03:02:01,353 | INFO     | exeerrorcode: 0
[2025-12-16 22:02:54] 2025-12-17 03:02:01,353 | INFO     | exeerrordiag: 
[2025-12-16 22:02:54] 2025-12-17 03:02:01,353 | INFO     | exitcode: 0
[2025-12-16 22:02:54] 2025-12-17 03:02:01,353 | INFO     | exitmsg: OK
[2025-12-16 22:02:54] 2025-12-17 03:02:01,353 | INFO     | cpuconsumptiontime: 59257 s
[2025-12-16 22:02:54] 2025-12-17 03:02:01,353 | INFO     | nevents: 400
[2025-12-16 22:02:54] 2025-12-17 03:02:01,353 | INFO     | neventsw: 0
[2025-12-16 22:02:54] 2025-12-17 03:02:01,353 | INFO     | pid: 248969
[2025-12-16 22:02:54] 2025-12-17 03:02:01,353 | INFO     | pgrp: 248969
[2025-12-16 22:02:54] 2025-12-17 03:02:01,354 | INFO     | corecount: 8
[2025-12-16 22:02:54] 2025-12-17 03:02:01,354 | INFO     | event service: False
[2025-12-16 22:02:54] 2025-12-17 03:02:01,354 | INFO     | sizes: {0: 2283731, 1: 2283787, 3: 2284014, 4: 2284014, 14: 2284042, 25: 2284070, 36: 2284488, 47: 2284516, 17208: 2316387, 17216: 2325469, 17245: 2325607}
[2025-12-16 22:02:54] 2025-12-17 03:02:01,354 | INFO     | --------------------------------------------------
[2025-12-16 22:02:54] 2025-12-17 03:02:01,354 | INFO     | 
[2025-12-16 22:02:54] 2025-12-17 03:02:01,354 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-12-16 22:02:54] 2025-12-17 03:02:01,454 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 22:02:54] 2025-12-17 03:02:01,454 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 22:02:54] 2025-12-17 03:02:01,454 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 22:02:54] 2025-12-17 03:02:01,454 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 22:02:54] 2025-12-17 03:02:01,454 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 22:02:54] 2025-12-17 03:02:01,455 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 22:02:54] 2025-12-17 03:02:01,455 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 22:02:54] 2025-12-17 03:02:01,455 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 22:02:54] 2025-12-17 03:02:01,455 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 22:02:54] 2025-12-17 03:02:01,455 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 22:02:54] 2025-12-17 03:02:01,455 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 22:02:54] 2025-12-17 03:02:01,455 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 22:02:54] 2025-12-17 03:02:01,455 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 22:02:54] 2025-12-17 03:02:01,455 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 22:02:54] 2025-12-17 03:02:01,455 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 22:02:54] 2025-12-17 03:02:01,455 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 22:02:54] 2025-12-17 03:02:01,455 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 22:02:54] 2025-12-17 03:02:01,455 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 22:02:54] 2025-12-17 03:02:01,456 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 22:02:54] 2025-12-17 03:02:01,456 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 22:02:54] 2025-12-17 03:02:01,456 | INFO     | job 6931013104 has completed (purged errors)
[2025-12-16 22:02:54] 2025-12-17 03:02:01,456 | INFO     | overall cleanup function is called
[2025-12-16 22:02:54] 2025-12-17 03:02:02,139 | INFO     | PID=236928 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-16 22:02:54] 2025-12-17 03:02:02,139 | INFO     | .. there are 31 such processes running
[2025-12-16 22:02:54] 2025-12-17 03:02:02,506 | INFO     | --- collectZombieJob: --- 10, [248969]
[2025-12-16 22:02:54] 2025-12-17 03:02:02,506 | INFO     | zombie collector waiting for pid 248969
[2025-12-16 22:02:54] 2025-12-17 03:02:02,506 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 22:02:54] 2025-12-17 03:02:02,506 | INFO     | collected zombie processes
[2025-12-16 22:02:54] 2025-12-17 03:02:02,507 | INFO     | will attempt to kill all subprocesses of pid=248969
[2025-12-16 22:02:54] 2025-12-17 03:02:03,641 | INFO     | process IDs to be killed: [248969] (in reverse order)
[2025-12-16 22:02:54] 2025-12-17 03:02:04,249 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 22:02:54] 2025-12-17 03:02:04,249 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 22:02:54] 2025-12-17 03:02:04,285 | INFO     | did not find any defunct processes belonging to 248969
[2025-12-16 22:02:54] 2025-12-17 03:02:04,347 | INFO     | did not find any defunct processes belonging to 248969
[2025-12-16 22:02:54] 2025-12-17 03:02:04,348 | INFO     | ready for new job
[2025-12-16 22:02:54] 2025-12-17 03:02:04,348 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 22:02:54] 2025-12-17 03:02:04,350 | INFO     | ***************************************
[2025-12-16 22:02:54] 2025-12-17 03:02:04,350 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 22:02:54] 2025-12-17 03:02:04,350 | INFO     | ***************************************
[2025-12-16 22:02:54] 2025-12-17 03:02:04,351 | INFO     | 
[2025-12-16 22:02:54] 2025-12-17 03:02:04,365 | INFO     | architecture information:
[2025-12-16 22:02:54] 2025-12-17 03:02:04,373 | INFO     | executing command: cat /etc/os-release
[2025-12-16 22:02:54] 2025-12-17 03:02:04,448 | INFO     | cat /etc/os-release:
[2025-12-16 22:02:54] NAME="CentOS Linux"
[2025-12-16 22:02:54] VERSION="7 (Core)"
[2025-12-16 22:02:54] ID="centos"
[2025-12-16 22:02:54] ID_LIKE="rhel fedora"
[2025-12-16 22:02:54] VERSION_ID="7"
[2025-12-16 22:02:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 22:02:54] ANSI_COLOR="0;31"
[2025-12-16 22:02:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 22:02:54] HOME_URL="https://www.centos.org/"
[2025-12-16 22:02:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 22:02:54] 
[2025-12-16 22:02:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 22:02:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 22:02:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 22:02:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 22:02:54] 
[2025-12-16 22:02:54] 2025-12-17 03:02:04,448 | INFO     | ***************************************
[2025-12-16 22:02:54] 2025-12-17 03:02:04,951 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-12-16 22:02:54] 2025-12-17 03:02:05,020 | INFO     | sufficient remaining disk space (94076141568 B)
[2025-12-16 22:02:54] 2025-12-17 03:02:05,021 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 22:02:54] 2025-12-17 03:02:05,021 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 22:02:54] 2025-12-17 03:02:05,021 | INFO     | update_server=False
[2025-12-16 22:02:54] 2025-12-17 03:02:05,021 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 22:02:54] 2025-12-17 03:02:05,028 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 22:02:54] 2025-12-17 03:02:05,028 | INFO     | aborting loop
[2025-12-16 22:02:54] 2025-12-17 03:02:05,101 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 22:02:54] 2025-12-17 03:02:05,323 | INFO     | all data control threads have been joined
[2025-12-16 22:02:54] 2025-12-17 03:02:05,493 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 22:02:54] 2025-12-17 03:02:05,512 | INFO     | all job control threads have been joined
[2025-12-16 22:02:54] 2025-12-17 03:02:06,019 | INFO     | all payload control threads have been joined
[2025-12-16 22:02:54] 2025-12-17 03:02:06,031 | INFO     | [job] retrieve thread has finished
[2025-12-16 22:02:54] 2025-12-17 03:02:06,035 | INFO     | [job] job monitor thread has finished
[2025-12-16 22:02:54] 2025-12-17 03:02:06,058 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 22:02:54] 2025-12-17 03:02:06,330 | INFO     | [data] control thread has finished
[2025-12-16 22:02:54] 2025-12-17 03:02:06,338 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 22:02:54] 2025-12-17 03:02:06,359 | INFO     | [job] validate thread has finished
[2025-12-16 22:02:54] 2025-12-17 03:02:06,413 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 22:02:54] 2025-12-17 03:02:06,518 | INFO     | [job] control thread has finished
[2025-12-16 22:02:54] 2025-12-17 03:02:06,771 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 22:02:54] 2025-12-17 03:02:06,786 | INFO     | [data] copytool_in thread has finished
[2025-12-16 22:02:54] 2025-12-17 03:02:07,025 | INFO     | [payload] control thread has finished
[2025-12-16 22:02:54] 2025-12-17 03:02:07,064 | INFO     | [job] queue monitor thread has finished
[2025-12-16 22:02:54] 2025-12-17 03:02:07,108 | INFO     | [data] copytool_out thread has finished
[2025-12-16 22:02:54] 2025-12-17 03:02:07,229 | INFO     | [payload] validate_post thread has finished
[2025-12-16 22:02:54] 2025-12-17 03:02:07,302 | INFO     | [payload] failed_post thread has finished
[2025-12-16 22:02:54] 2025-12-17 03:02:07,309 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 22:02:54] 2025-12-17 03:02:09,511 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 22:02:54] 2025-12-17 03:02:40,618 | INFO     | PID=236928 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-16 22:02:54] 2025-12-17 03:02:40,618 | INFO     | .. there are 31 such processes running
[2025-12-16 22:02:54] 2025-12-17 03:02:40,619 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 22:02:54] 2025-12-17 03:02:40,619 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 22:02:54] 2025-12-17 03:02:40,619 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 22:02:54] 2025-12-17 03:02:44,984 | INFO     | [monitor] cgroup control has ended
[2025-12-16 22:02:54] 2025-12-17 03:02:46,535 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139830971213632)>', '<ExcThread(monitor, started 139830486877952)>']
[2025-12-16 22:02:54] 2025-12-17 03:02:46,663 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 22:02:54] 2025-12-17 03:02:46,663 | INFO     | [monitor] control thread has ended
[2025-12-16 22:02:54] 2025-12-17 03:02:51,561 | INFO     | all workflow threads have been joined
[2025-12-16 22:02:54] 2025-12-17 03:02:51,561 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 22:02:54] 2025-12-17 03:02:51,562 | INFO     | traces error code: 0
[2025-12-16 22:02:54] 2025-12-17 03:02:51,562 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 22:02:54] 2025-12-17 03:02:53,034 [wrapper] ==== pilot stdout END ====
[2025-12-16 22:02:54] 2025-12-17 03:02:53,052 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 22:02:54] 2025-12-17 03:02:53,070 [wrapper] pilotpid: 236928
[2025-12-16 22:02:54] 2025-12-17 03:02:53,134 [wrapper] Pilot exit status: 0
[2025-12-16 22:02:54] 2025-12-17 03:02:53,208 [wrapper] pandaids: 6931013104
[2025-12-16 22:02:54] 2025-12-17 03:02:53,539 [wrapper] cleanup supervisor_pilot 1210186 236929
[2025-12-16 22:02:54] 2025-12-17 03:02:53,555 [wrapper] Test setup, not cleaning
[2025-12-16 22:02:54] 2025-12-17 03:02:53,571 [wrapper] apfmon messages muted
[2025-12-16 22:02:54] 2025-12-17 03:02:53,598 [wrapper] ==== wrapper stdout END ====
[2025-12-16 22:02:54] 2025-12-17 03:02:53,614 [wrapper] ==== wrapper stderr END ====
[2025-12-16 22:02:54]  *** Error codes and diagnostics ***
[2025-12-16 22:02:54]     "exeErrorCode": 0,
[2025-12-16 22:02:54]     "exeErrorDiag": "",
[2025-12-16 22:02:54]     "pilotErrorCode": 0,
[2025-12-16 22:02:54]     "pilotErrorDiag": "",
[2025-12-16 22:02:54]  *** Listing of results directory ***
[2025-12-16 22:02:54] total 449824
[2025-12-16 22:02:54] -rw-r--r--. 1 boincer umatlas    579449 Dec 16 04:01 pilot3.tar.gz
[2025-12-16 22:02:54] -rwx------. 1 boincer umatlas     36322 Dec 16 04:01 runpilot2-wrapper.sh
[2025-12-16 22:02:54] -rw-r--r--. 1 boincer umatlas      5112 Dec 16 04:02 queuedata.json
[2025-12-16 22:02:54] -rw-r--r--. 1 boincer umatlas       100 Dec 16 17:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 22:02:54] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 16 17:11 run_atlas
[2025-12-16 22:02:54] -rw-r--r--. 1 boincer umatlas       105 Dec 16 17:11 job.xml
[2025-12-16 22:02:54] -rw-r--r--. 2 boincer umatlas 227398015 Dec 16 17:11 EVNT.47898761._000763.pool.root.1
[2025-12-16 22:02:54] -rw-r--r--. 2 boincer umatlas    592398 Dec 16 17:11 input.tar.gz
[2025-12-16 22:02:54] -rw-r--r--. 2 boincer umatlas     15847 Dec 16 17:11 start_atlas.sh
[2025-12-16 22:02:54] drwxrwx--x. 2 boincer umatlas      4096 Dec 16 17:11 shared
[2025-12-16 22:02:54] -rw-r--r--. 1 boincer umatlas         0 Dec 16 17:11 boinc_lockfile
[2025-12-16 22:02:54] -rw-r--r--. 1 boincer umatlas      2508 Dec 16 17:11 pandaJob.out
[2025-12-16 22:02:54] -rw-------. 1 boincer umatlas        57 Dec 16 17:11 setup.sh.local
[2025-12-16 22:02:54] -rw-------. 1 boincer umatlas    987401 Dec 16 17:13 agis_schedconf.cvmfs.json
[2025-12-16 22:02:54] drwx------. 5 boincer umatlas      4096 Dec 16 17:13 pilot3
[2025-12-16 22:02:54] -rw-------. 1 boincer umatlas 224010758 Dec 16 21:59 HITS.47898763._019606.pool.root.1
[2025-12-16 22:02:54] -rw-r--r--. 1 boincer umatlas       531 Dec 16 21:59 boinc_task_state.xml
[2025-12-16 22:02:54] -rw-r--r--. 1 boincer umatlas      6879 Dec 16 22:00 init_data.xml
[2025-12-16 22:02:54] -rw-------. 1 boincer umatlas      1044 Dec 16 22:01 memory_monitor_summary.json
[2025-12-16 22:02:54] -rw-------. 1 boincer umatlas   1516240 Dec 16 22:01 agis_ddmendpoints.agis.ALL.json
[2025-12-16 22:02:54] -rw-------. 1 boincer umatlas    495675 Dec 16 22:01 log.47898763._019606.job.log.tgz.1
[2025-12-16 22:02:54] -rw-------. 1 boincer umatlas      7831 Dec 16 22:02 heartbeat.json
[2025-12-16 22:02:54] -rw-------. 1 boincer umatlas        95 Dec 16 22:02 pilot_heartbeat.json
[2025-12-16 22:02:54] -rw-------. 1 boincer umatlas      4823 Dec 16 22:02 pilotlog.txt
[2025-12-16 22:02:54] -rw-r--r--. 1 boincer umatlas        28 Dec 16 22:02 wrapper_checkpoint.txt
[2025-12-16 22:02:54] -rw-------. 1 boincer umatlas   2148953 Dec 16 22:02 log.47898763._019606.job.log.1
[2025-12-16 22:02:54] -rw-------. 1 boincer umatlas       357 Dec 16 22:02 output.list
[2025-12-16 22:02:54] -rw-r--r--. 1 boincer umatlas       620 Dec 16 22:02 runtime_log
[2025-12-16 22:02:54] -rw-------. 1 boincer umatlas   2662400 Dec 16 22:02 result.tar.gz
[2025-12-16 22:02:54] -rw-r--r--. 1 boincer umatlas      8192 Dec 16 22:02 boinc_mmap_file
[2025-12-16 22:02:54] -rw-r--r--. 1 boincer umatlas      9353 Dec 16 22:02 runtime_log.err
[2025-12-16 22:02:54] -rw-------. 1 boincer umatlas       657 Dec 16 22:02 8huNDmS7fp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJOVKDmuVUZmn.diag
[2025-12-16 22:02:54] -rw-r--r--. 1 boincer umatlas     21521 Dec 16 22:02 stderr.txt
[2025-12-16 22:02:54] HITS file was successfully produced:
[2025-12-16 22:02:54] -rw-------. 1 boincer umatlas 224010758 Dec 16 21:59 shared/HITS.pool.root.1
[2025-12-16 22:02:54]  *** Contents of shared directory: ***
[2025-12-16 22:02:54] total 444040
[2025-12-16 22:02:54] -rw-r--r--. 2 boincer umatlas 227398015 Dec 16 17:11 ATLAS.root_0
[2025-12-16 22:02:54] -rw-r--r--. 2 boincer umatlas    592398 Dec 16 17:11 input.tar.gz
[2025-12-16 22:02:54] -rw-r--r--. 2 boincer umatlas     15847 Dec 16 17:11 start_atlas.sh
[2025-12-16 22:02:54] -rw-------. 1 boincer umatlas 224010758 Dec 16 21:59 HITS.pool.root.1
[2025-12-16 22:02:54] -rw-------. 1 boincer umatlas   2662400 Dec 16 22:02 result.tar.gz
22:03:16 (231812): run_atlas exited; CPU time 60097.358320
22:03:16 (231812): called boinc_finish(0)

</stderr_txt>
]]>

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