Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:46:50 (28950): wrapper (7.7.26015): starting
15:46:50 (28950): wrapper: running run_atlas (--nthreads 12)
[2025-12-16 15:46:50] Arguments: --nthreads 12
[2025-12-16 15:46:50] Threads: 12
[2025-12-16 15:46:50] Checking for CVMFS
[2025-12-16 15:46:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 15:46:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 15:46:51] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 15:46:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 15:46:51] 2.11.2.0 25590 217661 92924 154087 0 56 14373401 20275201 1 130560 2 111502887 99.963 9130702 27831 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-16 15:46:51] CVMFS is ok
[2025-12-16 15:46:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 15:46:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 15:46:51] Further information can be found at the LHC@home message board.
[2025-12-16 15:46:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 15:46:51] Checking for apptainer binary...
[2025-12-16 15:46:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 15:46:51] Running /usr/bin/apptainer --version
[2025-12-16 15:46:51] apptainer version 1.3.2-1.el7
[2025-12-16 15:46:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 15:46:53] c-205-24.aglt2.org
[2025-12-16 15:46:53] apptainer works
[2025-12-16 15:46:53] Set ATHENA_PROC_NUMBER=12
[2025-12-16 15:46:53] Set ATHENA_CORE_NUMBER=12
[2025-12-16 15:46:53] Starting ATLAS job with PandaID=6931012337
[2025-12-16 15:46:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 17:01:38]  *** The last 200 lines of the pilot log: ***
[2025-12-16 17:01:38]  workdir=None
[2025-12-16 17:01:38] ]
[2025-12-16 17:01:38] 2025-12-16 22:00:59,189 | INFO     | transferring file log.47886933._006461.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6931012337/log.47886933._006461.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-16 17:01:38] 2025-12-16 22:00:59,189 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6931012337/log.47886933._006461.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886933._006461.job
[2025-12-16 17:01:38] 2025-12-16 22:00:59,210 | INFO     | adding to output.list: log.47886933._006461.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/ee/log.47886933._006461.job.log.tg
[2025-12-16 17:01:38] 2025-12-16 22:00:59,211 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-16 17:01:38] 2025-12-16 22:00:59,211 | INFO     | summary of transferred files:
[2025-12-16 17:01:38] 2025-12-16 22:00:59,212 | INFO     |  -- lfn=log.47886933._006461.job.log.tgz.1, status_code=0, status=transferred
[2025-12-16 17:01:38] 2025-12-16 22:00:59,212 | INFO     | stage-out finished correctly
[2025-12-16 17:01:38] 2025-12-16 22:01:00,906 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-16 17:01:38] 2025-12-16 22:01:00,985 | INFO     | job 6931012337 has state=finished
[2025-12-16 17:01:38] 2025-12-16 22:01:00,985 | INFO     | preparing for final server update for job 6931012337 in state='finished'
[2025-12-16 17:01:38] 2025-12-16 22:01:00,986 | INFO     | this job has now completed (state=finished)
[2025-12-16 17:01:38] 2025-12-16 22:01:00,986 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-16 17:01:38] 2025-12-16 22:01:00,986 | INFO     | log transfer has been attempted: DONE
[2025-12-16 17:01:38] 2025-12-16 22:01:00,986 | INFO     | job 6931012337 has finished - writing final server update
[2025-12-16 17:01:38] 2025-12-16 22:01:00,986 | INFO     | total number of processed events: 400 (read)
[2025-12-16 17:01:38] 2025-12-16 22:01:00,987 | INFO     | executing command: lscpu
[2025-12-16 17:01:38] 2025-12-16 22:01:01,013 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-16 17:01:38] 2025-12-16 22:01:01,151 | WARNING  | process 7129 can no longer be monitored (due to stat problems) - aborting
[2025-12-16 17:01:38] 2025-12-16 22:01:01,151 | INFO     | time since job start (4432s) is within the limit (174528.0s)
[2025-12-16 17:01:38] 2025-12-16 22:01:01,151 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6931012337/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 17:01:38] 2025-12-16 22:01:01,152 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6931012337/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 17:01:38] 2025-12-16 22:01:01,153 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-12-16 17:01:38] 2025-12-16 22:01:01,153 | WARNING  | maxPSS not found in memory monitor output
[2025-12-16 17:01:38] 2025-12-16 22:01:01,153 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4077207 B
[2025-12-16 17:01:38] 2025-12-16 22:01:01,153 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15598 B
[2025-12-16 17:01:38] 2025-12-16 22:01:01,154 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-16 17:01:38] 2025-12-16 22:01:03,157 | INFO     | time since job start (4434s) is within the limit (174528.0s)
[2025-12-16 17:01:38] 2025-12-16 22:01:05,162 | INFO     | time since job start (4436s) is within the limit (174528.0s)
[2025-12-16 17:01:38] 2025-12-16 22:01:06,895 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-16 17:01:38] 2025-12-16 22:01:06,903 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1651.4166666666667
[2025-12-16 17:01:38] 2025-12-16 22:01:06,906 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6931012337/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 17:01:38] 2025-12-16 22:01:06,907 | INFO     | extracted standard info from prmon json
[2025-12-16 17:01:38] 2025-12-16 22:01:06,907 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 17:01:38] 2025-12-16 22:01:06,907 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 17:01:38] 2025-12-16 22:01:06,907 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 17:01:38] 2025-12-16 22:01:06,908 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 17:01:38] 2025-12-16 22:01:06,910 | INFO     | fitting pss+swap vs Time
[2025-12-16 17:01:38] 2025-12-16 22:01:06,910 | INFO     | sum of square deviations: 89127252.5
[2025-12-16 17:01:38] 2025-12-16 22:01:06,910 | INFO     | sum of deviations: -7988604316.499999
[2025-12-16 17:01:38] 2025-12-16 22:01:06,910 | INFO     | mean x: 1765920346.5
[2025-12-16 17:01:38] 2025-12-16 22:01:06,910 | INFO     | mean y: 2747394.1666666665
[2025-12-16 17:01:38] 2025-12-16 22:01:06,911 | INFO     | intersect: 158284737548.0208
[2025-12-16 17:01:38] 2025-12-16 22:01:06,911 | INFO     | chi2: 0.05758423941656015
[2025-12-16 17:01:38] 2025-12-16 22:01:06,911 | INFO     | current memory leak: -89.63 B/s (using 66 data points, chi2=0.06)
[2025-12-16 17:01:38] 2025-12-16 22:01:06,911 | INFO     | could have reported an average CPU frequency of 2024 MHz (6 samples)
[2025-12-16 17:01:38] 2025-12-16 22:01:06,911 | INFO     | ..............................
[2025-12-16 17:01:38] 2025-12-16 22:01:06,912 | INFO     | . Timing measurements:
[2025-12-16 17:01:38] 2025-12-16 22:01:06,912 | INFO     | . get job = 0 s
[2025-12-16 17:01:38] 2025-12-16 22:01:06,912 | INFO     | . initial setup = 2 s
[2025-12-16 17:01:38] 2025-12-16 22:01:06,912 | INFO     | . payload setup = 7 s
[2025-12-16 17:01:38] 2025-12-16 22:01:06,912 | INFO     | . stage-in = 0 s
[2025-12-16 17:01:38] 2025-12-16 22:01:06,912 | INFO     | . payload execution = 4401 s
[2025-12-16 17:01:38] 2025-12-16 22:01:06,912 | INFO     | . stage-out = 0 s
[2025-12-16 17:01:38] 2025-12-16 22:01:06,912 | INFO     | . log creation = 0 s
[2025-12-16 17:01:38] 2025-12-16 22:01:06,913 | INFO     | ..............................
[2025-12-16 17:01:38] 2025-12-16 22:01:06,944 | INFO     | sufficient remaining disk space (29450305536 B)
[2025-12-16 17:01:38] 2025-12-16 22:01:06,960 | INFO     | work directory size check will use 2768240640 B as a max limit (20% grace limit added, divider=1)
[2025-12-16 17:01:38] 2025-12-16 22:01:06,995 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6931012337: 4374602 B (within 2768240640 B limit)
[2025-12-16 17:01:38] 2025-12-16 22:01:06,995 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6931012337/HITS.47886933._006461.pool.root.1 does not exist (skip from workdir size calculation)
[2025-12-16 17:01:38] 2025-12-16 22:01:06,995 | INFO     | total size of present files: 0 B (workdir size: 4374602 B)
[2025-12-16 17:01:38] 2025-12-16 22:01:06,996 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6931012337/HITS.47886933._006461.pool.root.1 since it does not exist
[2025-12-16 17:01:38] 2025-12-16 22:01:07,089 | INFO     | number of running child processes to parent process 7129: 1
[2025-12-16 17:01:38] 2025-12-16 22:01:07,089 | INFO     | maximum number of monitored processes: 6
[2025-12-16 17:01:38] 2025-12-16 22:01:07,089 | INFO     | aborting job monitoring since job object (job id=6931012337) has expired
[2025-12-16 17:01:38] 2025-12-16 22:01:07,098 | INFO     | 
[2025-12-16 17:01:38] 2025-12-16 22:01:07,099 | INFO     | job summary report
[2025-12-16 17:01:38] 2025-12-16 22:01:07,099 | INFO     | --------------------------------------------------
[2025-12-16 17:01:38] 2025-12-16 22:01:07,099 | INFO     | PanDA job id: 6931012337
[2025-12-16 17:01:38] 2025-12-16 22:01:07,099 | INFO     | task id: 47886933
[2025-12-16 17:01:38] 2025-12-16 22:01:07,099 | INFO     | errors: (none)
[2025-12-16 17:01:38] 2025-12-16 22:01:07,099 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 17:01:38] 2025-12-16 22:01:07,100 | INFO     | pilot state: finished 
[2025-12-16 17:01:38] 2025-12-16 22:01:07,100 | INFO     | transexitcode: 0
[2025-12-16 17:01:38] 2025-12-16 22:01:07,100 | INFO     | exeerrorcode: 0
[2025-12-16 17:01:38] 2025-12-16 22:01:07,100 | INFO     | exeerrordiag: 
[2025-12-16 17:01:38] 2025-12-16 22:01:07,100 | INFO     | exitcode: 0
[2025-12-16 17:01:38] 2025-12-16 22:01:07,100 | INFO     | exitmsg: OK
[2025-12-16 17:01:38] 2025-12-16 22:01:07,100 | INFO     | cpuconsumptiontime: 48648 s
[2025-12-16 17:01:38] 2025-12-16 22:01:07,101 | INFO     | nevents: 400
[2025-12-16 17:01:38] 2025-12-16 22:01:07,101 | INFO     | neventsw: 0
[2025-12-16 17:01:38] 2025-12-16 22:01:07,101 | INFO     | pid: 7129
[2025-12-16 17:01:38] 2025-12-16 22:01:07,101 | INFO     | pgrp: 7129
[2025-12-16 17:01:38] 2025-12-16 22:01:07,101 | INFO     | corecount: 12
[2025-12-16 17:01:38] 2025-12-16 22:01:07,101 | INFO     | event service: False
[2025-12-16 17:01:38] 2025-12-16 22:01:07,101 | INFO     | sizes: {0: 2283794, 1: 2283993, 6: 2284255, 11: 2284283, 4412: 2310350, 4413: 2319531, 4415: 2319531, 4421: 2319725}
[2025-12-16 17:01:38] 2025-12-16 22:01:07,102 | INFO     | --------------------------------------------------
[2025-12-16 17:01:38] 2025-12-16 22:01:07,102 | INFO     | 
[2025-12-16 17:01:38] 2025-12-16 22:01:07,102 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-16 17:01:38] 2025-12-16 22:01:07,127 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 17:01:38] 2025-12-16 22:01:07,127 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 17:01:38] 2025-12-16 22:01:07,127 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 17:01:38] 2025-12-16 22:01:07,127 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 17:01:38] 2025-12-16 22:01:07,128 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 17:01:38] 2025-12-16 22:01:07,128 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 17:01:38] 2025-12-16 22:01:07,128 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 17:01:38] 2025-12-16 22:01:07,128 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 17:01:38] 2025-12-16 22:01:07,128 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 17:01:38] 2025-12-16 22:01:07,128 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 17:01:38] 2025-12-16 22:01:07,129 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 17:01:38] 2025-12-16 22:01:07,129 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 17:01:38] 2025-12-16 22:01:07,129 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 17:01:38] 2025-12-16 22:01:07,129 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 17:01:38] 2025-12-16 22:01:07,129 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 17:01:38] 2025-12-16 22:01:07,129 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 17:01:38] 2025-12-16 22:01:07,129 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 17:01:38] 2025-12-16 22:01:07,130 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 17:01:38] 2025-12-16 22:01:07,130 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 17:01:38] 2025-12-16 22:01:07,130 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 17:01:38] 2025-12-16 22:01:07,130 | INFO     | job 6931012337 has completed (purged errors)
[2025-12-16 17:01:38] 2025-12-16 22:01:07,130 | INFO     | overall cleanup function is called
[2025-12-16 17:01:38] 2025-12-16 22:01:08,138 | INFO     | --- collectZombieJob: --- 10, [7129]
[2025-12-16 17:01:38] 2025-12-16 22:01:08,138 | INFO     | zombie collector waiting for pid 7129
[2025-12-16 17:01:38] 2025-12-16 22:01:08,138 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 17:01:38] 2025-12-16 22:01:08,138 | INFO     | collected zombie processes
[2025-12-16 17:01:38] 2025-12-16 22:01:08,138 | INFO     | will attempt to kill all subprocesses of pid=7129
[2025-12-16 17:01:38] 2025-12-16 22:01:08,232 | INFO     | process IDs to be killed: [7129] (in reverse order)
[2025-12-16 17:01:38] 2025-12-16 22:01:08,310 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 17:01:38] 2025-12-16 22:01:08,310 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 17:01:38] 2025-12-16 22:01:08,314 | INFO     | did not find any defunct processes belonging to 7129
[2025-12-16 17:01:38] 2025-12-16 22:01:08,318 | INFO     | did not find any defunct processes belonging to 7129
[2025-12-16 17:01:38] 2025-12-16 22:01:08,318 | INFO     | ready for new job
[2025-12-16 17:01:38] 2025-12-16 22:01:08,319 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 17:01:38] 2025-12-16 22:01:08,320 | INFO     | ***************************************
[2025-12-16 17:01:38] 2025-12-16 22:01:08,320 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 17:01:38] 2025-12-16 22:01:08,320 | INFO     | ***************************************
[2025-12-16 17:01:38] 2025-12-16 22:01:08,320 | INFO     | 
[2025-12-16 17:01:38] 2025-12-16 22:01:08,321 | INFO     | architecture information:
[2025-12-16 17:01:38] 2025-12-16 22:01:08,321 | INFO     | executing command: cat /etc/os-release
[2025-12-16 17:01:38] 2025-12-16 22:01:08,335 | INFO     | cat /etc/os-release:
[2025-12-16 17:01:38] NAME="CentOS Linux"
[2025-12-16 17:01:38] VERSION="7 (Core)"
[2025-12-16 17:01:38] ID="centos"
[2025-12-16 17:01:38] ID_LIKE="rhel fedora"
[2025-12-16 17:01:38] VERSION_ID="7"
[2025-12-16 17:01:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 17:01:38] ANSI_COLOR="0;31"
[2025-12-16 17:01:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 17:01:38] HOME_URL="https://www.centos.org/"
[2025-12-16 17:01:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 17:01:38] 
[2025-12-16 17:01:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 17:01:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 17:01:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 17:01:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 17:01:38] 
[2025-12-16 17:01:38] 2025-12-16 22:01:08,335 | INFO     | ***************************************
[2025-12-16 17:01:38] 2025-12-16 22:01:08,838 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-16 17:01:38] 2025-12-16 22:01:08,855 | INFO     | sufficient remaining disk space (29455548416 B)
[2025-12-16 17:01:38] 2025-12-16 22:01:08,855 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 17:01:38] 2025-12-16 22:01:08,856 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 17:01:38] 2025-12-16 22:01:08,856 | INFO     | update_server=False
[2025-12-16 17:01:38] 2025-12-16 22:01:08,856 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 17:01:38] 2025-12-16 22:01:08,856 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 17:01:38] 2025-12-16 22:01:08,856 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 17:01:38] 2025-12-16 22:01:08,857 | INFO     | aborting loop
[2025-12-16 17:01:38] 2025-12-16 22:01:09,525 | INFO     | all data control threads have been joined
[2025-12-16 17:01:38] 2025-12-16 22:01:09,605 | INFO     | all payload control threads have been joined
[2025-12-16 17:01:38] 2025-12-16 22:01:09,809 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 17:01:38] 2025-12-16 22:01:09,848 | INFO     | all job control threads have been joined
[2025-12-16 17:01:38] 2025-12-16 22:01:09,859 | INFO     | [job] job monitor thread has finished
[2025-12-16 17:01:38] 2025-12-16 22:01:09,861 | INFO     | [job] retrieve thread has finished
[2025-12-16 17:01:38] 2025-12-16 22:01:09,862 | INFO     | [job] queue monitor thread has finished
[2025-12-16 17:01:38] 2025-12-16 22:01:10,004 | INFO     | [payload] failed_post thread has finished
[2025-12-16 17:01:38] 2025-12-16 22:01:10,020 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 17:01:38] 2025-12-16 22:01:10,066 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 17:01:38] 2025-12-16 22:01:10,388 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 17:01:38] 2025-12-16 22:01:10,531 | INFO     | [data] control thread has finished
[2025-12-16 17:01:38] 2025-12-16 22:01:10,610 | INFO     | [payload] control thread has finished
[2025-12-16 17:01:38] 2025-12-16 22:01:10,621 | INFO     | [data] copytool_in thread has finished
[2025-12-16 17:01:38] 2025-12-16 22:01:10,746 | INFO     | [payload] validate_post thread has finished
[2025-12-16 17:01:38] 2025-12-16 22:01:10,853 | INFO     | [job] control thread has finished
[2025-12-16 17:01:38] 2025-12-16 22:01:11,041 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 17:01:38] 2025-12-16 22:01:11,286 | INFO     | [job] validate thread has finished
[2025-12-16 17:01:38] 2025-12-16 22:01:11,498 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 17:01:38] 2025-12-16 22:01:11,815 | INFO     | [data] copytool_out thread has finished
[2025-12-16 17:01:38] 2025-12-16 22:01:15,504 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 17:01:38] 2025-12-16 22:01:16,302 | INFO     | [monitor] cgroup control has ended
[2025-12-16 17:01:38] 2025-12-16 22:01:17,845 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139672101128000)>', '<ExcThread(monitor, started 139671514371840)>']
[2025-12-16 17:01:38] 2025-12-16 22:01:22,870 | INFO     | all workflow threads have been joined
[2025-12-16 17:01:38] 2025-12-16 22:01:22,870 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 17:01:38] 2025-12-16 22:01:22,883 | INFO     | traces error code: 0
[2025-12-16 17:01:38] 2025-12-16 22:01:22,883 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 17:01:38] 2025-12-16 22:01:38,369 | INFO     | PID=589 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-12-16 17:01:38] 2025-12-16 22:01:38,370 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 17:01:38] 2025-12-16 22:01:38,370 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 17:01:38] 2025-12-16 22:01:38,370 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 17:01:38] 2025-12-16 22:01:38,370 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 17:01:38] 2025-12-16 22:01:38,371 | INFO     | [monitor] control thread has ended
[2025-12-16 17:01:38] 2025-12-16 22:01:38,448 [wrapper] ==== pilot stdout END ====
[2025-12-16 17:01:38] 2025-12-16 22:01:38,451 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 17:01:38] 2025-12-16 22:01:38,455 [wrapper] pilotpid: 589
[2025-12-16 17:01:38] 2025-12-16 22:01:38,459 [wrapper] Pilot exit status: 0
[2025-12-16 17:01:38] 2025-12-16 22:01:38,473 [wrapper] pandaids: 6931012337
[2025-12-16 17:01:38] 2025-12-16 22:01:38,512 [wrapper] cleanup supervisor_pilot 29296 590
[2025-12-16 17:01:38] 2025-12-16 22:01:38,516 [wrapper] Test setup, not cleaning
[2025-12-16 17:01:38] 2025-12-16 22:01:38,520 [wrapper] apfmon messages muted
[2025-12-16 17:01:38] 2025-12-16 22:01:38,524 [wrapper] ==== wrapper stdout END ====
[2025-12-16 17:01:38] 2025-12-16 22:01:38,528 [wrapper] ==== wrapper stderr END ====
[2025-12-16 17:01:38]  *** Error codes and diagnostics ***
[2025-12-16 17:01:38]     "exeErrorCode": 0,
[2025-12-16 17:01:38]     "exeErrorDiag": "",
[2025-12-16 17:01:38]     "pilotErrorCode": 0,
[2025-12-16 17:01:38]     "pilotErrorDiag": "",
[2025-12-16 17:01:38]  *** Listing of results directory ***
[2025-12-16 17:01:38] total 335980
[2025-12-16 17:01:38] -rw-r--r-- 1 boincer umatlas    579449 Dec 16 04:01 pilot3.tar.gz
[2025-12-16 17:01:38] -rwx------ 1 boincer umatlas     36322 Dec 16 04:01 runpilot2-wrapper.sh
[2025-12-16 17:01:38] -rw-r--r-- 1 boincer umatlas      5112 Dec 16 04:02 queuedata.json
[2025-12-16 17:01:38] -rw-r--r-- 1 boincer umatlas       100 Dec 16 15:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 17:01:38] -rwxr-xr-x 1 boincer umatlas      7986 Dec 16 15:46 run_atlas
[2025-12-16 17:01:38] -rw-r--r-- 1 boincer umatlas       105 Dec 16 15:46 job.xml
[2025-12-16 17:01:38] -rw-r--r-- 2 boincer umatlas 192166474 Dec 16 15:46 EVNT.47886929._000250.pool.root.1
[2025-12-16 17:01:38] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 15:46 start_atlas.sh
[2025-12-16 17:01:38] drwxrwx--x 2 boincer umatlas      4096 Dec 16 15:46 shared
[2025-12-16 17:01:38] -rw-r--r-- 2 boincer umatlas    592396 Dec 16 15:46 input.tar.gz
[2025-12-16 17:01:38] -rw-r--r-- 1 boincer umatlas         0 Dec 16 15:46 boinc_lockfile
[2025-12-16 17:01:38] -rw-r--r-- 1 boincer umatlas      2513 Dec 16 15:46 pandaJob.out
[2025-12-16 17:01:38] -rw------- 1 boincer umatlas        57 Dec 16 15:46 setup.sh.local
[2025-12-16 17:01:38] -rw------- 1 boincer umatlas    987409 Dec 16 15:47 agis_schedconf.cvmfs.json
[2025-12-16 17:01:38] -rw------- 1 boincer umatlas   1516240 Dec 16 15:47 agis_ddmendpoints.agis.ALL.json
[2025-12-16 17:01:38] drwx------ 5 boincer umatlas      4096 Dec 16 15:47 pilot3
[2025-12-16 17:01:38] -rw-r--r-- 1 boincer umatlas      5953 Dec 16 16:56 init_data.xml
[2025-12-16 17:01:38] -rw------- 1 boincer umatlas 145918758 Dec 16 17:00 HITS.47886933._006461.pool.root.1
[2025-12-16 17:01:38] -rw-r--r-- 1 boincer umatlas       529 Dec 16 17:00 boinc_task_state.xml
[2025-12-16 17:01:38] -rw------- 1 boincer umatlas      1045 Dec 16 17:00 memory_monitor_summary.json
[2025-12-16 17:01:38] -rw------- 1 boincer umatlas    379111 Dec 16 17:00 log.47886933._006461.job.log.tgz.1
[2025-12-16 17:01:38] -rw------- 1 boincer umatlas      7851 Dec 16 17:01 heartbeat.json
[2025-12-16 17:01:38] -rw-r--r-- 1 boincer umatlas      8192 Dec 16 17:01 boinc_mmap_file
[2025-12-16 17:01:38] -rw-r--r-- 1 boincer umatlas        27 Dec 16 17:01 wrapper_checkpoint.txt
[2025-12-16 17:01:38] -rw------- 1 boincer umatlas        95 Dec 16 17:01 pilot_heartbeat.json
[2025-12-16 17:01:38] -rw------- 1 boincer umatlas       743 Dec 16 17:01 pilotlog.txt
[2025-12-16 17:01:38] -rw------- 1 boincer umatlas    643216 Dec 16 17:01 log.47886933._006461.job.log.1
[2025-12-16 17:01:38] -rw------- 1 boincer umatlas       357 Dec 16 17:01 output.list
[2025-12-16 17:01:38] -rw-r--r-- 1 boincer umatlas       620 Dec 16 17:01 runtime_log
[2025-12-16 17:01:38] -rw------- 1 boincer umatlas   1044480 Dec 16 17:01 result.tar.gz
[2025-12-16 17:01:38] -rw-r--r-- 1 boincer umatlas      9344 Dec 16 17:01 runtime_log.err
[2025-12-16 17:01:38] -rw------- 1 boincer umatlas       659 Dec 16 17:01 kYkLDm76fp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmslZKDmFWjFNo.diag
[2025-12-16 17:01:38] -rw-r--r-- 1 boincer umatlas     22618 Dec 16 17:01 stderr.txt
[2025-12-16 17:01:38] HITS file was successfully produced:
[2025-12-16 17:01:38] -rw------- 1 boincer umatlas 145918758 Dec 16 17:00 shared/HITS.pool.root.1
[2025-12-16 17:01:38]  *** Contents of shared directory: ***
[2025-12-16 17:01:38] total 331784
[2025-12-16 17:01:38] -rw-r--r-- 2 boincer umatlas 192166474 Dec 16 15:46 ATLAS.root_0
[2025-12-16 17:01:38] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 15:46 start_atlas.sh
[2025-12-16 17:01:38] -rw-r--r-- 2 boincer umatlas    592396 Dec 16 15:46 input.tar.gz
[2025-12-16 17:01:38] -rw------- 1 boincer umatlas 145918758 Dec 16 17:00 HITS.pool.root.1
[2025-12-16 17:01:38] -rw------- 1 boincer umatlas   1044480 Dec 16 17:01 result.tar.gz
17:01:40 (28950): run_atlas exited; CPU time 48637.328925
17:01:40 (28950): called boinc_finish(0)

</stderr_txt>
]]>

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