Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:30:27 (13422): wrapper (7.7.26015): starting
15:30:27 (13422): wrapper: running run_atlas (--nthreads 12)
[2025-12-16 15:30:27] Arguments: --nthreads 12
[2025-12-16 15:30:27] Threads: 12
[2025-12-16 15:30:27] Checking for CVMFS
[2025-12-16 15:30:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 15:30:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 15:30:28] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 15:30:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 15:30:28] 2.11.2.0 2998 132677 96712 154087 3 57 13042681 20275201 1 130560 0 56840393 99.957 5855033 35526 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-16 15:30:28] CVMFS is ok
[2025-12-16 15:30:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 15:30:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 15:30:28] Further information can be found at the LHC@home message board.
[2025-12-16 15:30:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 15:30:28] Checking for apptainer binary...
[2025-12-16 15:30:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 15:30:28] Running /usr/bin/apptainer --version
[2025-12-16 15:30:28] apptainer version 1.3.2-1.el7
[2025-12-16 15:30:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 15:30:29] c-205-12.aglt2.org
[2025-12-16 15:30:29] apptainer works
[2025-12-16 15:30:29] Set ATHENA_PROC_NUMBER=12
[2025-12-16 15:30:29] Set ATHENA_CORE_NUMBER=12
[2025-12-16 15:30:29] Starting ATLAS job with PandaID=6931441133
[2025-12-16 15:30:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 17:10:13]  *** The last 200 lines of the pilot log: ***
[2025-12-16 17:10:13]  scope=mc23_13p6TeV
[2025-12-16 17:10:13]  status=None
[2025-12-16 17:10:13]  status_code=0
[2025-12-16 17:10:13]  storage_token=
[2025-12-16 17:10:13]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6931441133/log.47905873._000499.job.log.tgz.1
[2025-12-16 17:10:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b6/2a/log.47905873._000499.job.log.tgz.1
[2025-12-16 17:10:13]  workdir=None
[2025-12-16 17:10:13] ]
[2025-12-16 17:10:13] 2025-12-16 22:09:31,837 | INFO     | transferring file log.47905873._000499.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6931441133/log.47905873._000499.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-16 17:10:13] 2025-12-16 22:09:31,837 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6931441133/log.47905873._000499.job.log.tgz.1 /tmp/boinchome/slots/0/log.47905873._000499.job
[2025-12-16 17:10:13] 2025-12-16 22:09:31,858 | INFO     | adding to output.list: log.47905873._000499.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b6/2a/log.47905873._000499.job.log.tg
[2025-12-16 17:10:13] 2025-12-16 22:09:31,859 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-16 17:10:13] 2025-12-16 22:09:31,860 | INFO     | summary of transferred files:
[2025-12-16 17:10:13] 2025-12-16 22:09:31,860 | INFO     |  -- lfn=log.47905873._000499.job.log.tgz.1, status_code=0, status=transferred
[2025-12-16 17:10:13] 2025-12-16 22:09:31,860 | INFO     | stage-out finished correctly
[2025-12-16 17:10:13] 2025-12-16 22:09:32,350 | INFO     | time since job start (5926s) is within the limit (174528.0s)
[2025-12-16 17:10:13] 2025-12-16 22:09:32,864 | INFO     | monitor loop #441: job 0:6931441133 is in state 'finished'
[2025-12-16 17:10:13] 2025-12-16 22:09:32,864 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 17:10:13] 2025-12-16 22:09:34,356 | INFO     | time since job start (5928s) is within the limit (174528.0s)
[2025-12-16 17:10:13] 2025-12-16 22:09:35,231 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-16 17:10:13] 2025-12-16 22:09:35,367 | INFO     | monitor loop #442: job 0:6931441133 is in state 'finished'
[2025-12-16 17:10:13] 2025-12-16 22:09:35,367 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 17:10:13] 2025-12-16 22:09:36,361 | INFO     | time since job start (5930s) is within the limit (174528.0s)
[2025-12-16 17:10:13] 2025-12-16 22:09:37,032 | INFO     | job 6931441133 has state=finished
[2025-12-16 17:10:13] 2025-12-16 22:09:37,032 | INFO     | preparing for final server update for job 6931441133 in state='finished'
[2025-12-16 17:10:13] 2025-12-16 22:09:37,033 | INFO     | this job has now completed (state=finished)
[2025-12-16 17:10:13] 2025-12-16 22:09:37,033 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-16 17:10:13] 2025-12-16 22:09:37,033 | INFO     | log transfer has been attempted: DONE
[2025-12-16 17:10:13] 2025-12-16 22:09:37,034 | INFO     | job 6931441133 has finished - writing final server update
[2025-12-16 17:10:13] 2025-12-16 22:09:37,034 | INFO     | total number of processed events: 400 (read)
[2025-12-16 17:10:13] 2025-12-16 22:09:37,036 | INFO     | executing command: lscpu
[2025-12-16 17:10:13] 2025-12-16 22:09:37,065 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-16 17:10:13] 2025-12-16 22:09:37,876 | INFO     | monitor loop #443: job 0:6931441133 is in state 'finished'
[2025-12-16 17:10:13] 2025-12-16 22:09:37,876 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 17:10:13] 2025-12-16 22:09:38,367 | INFO     | time since job start (5932s) is within the limit (174528.0s)
[2025-12-16 17:10:13] 2025-12-16 22:09:39,491 | INFO     | PID=17458 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 17:10:13] 2025-12-16 22:09:40,379 | INFO     | monitor loop #444: job 0:6931441133 is in state 'finished'
[2025-12-16 17:10:13] 2025-12-16 22:09:40,385 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 17:10:13] 2025-12-16 22:09:40,492 | INFO     | time since job start (5934s) is within the limit (174528.0s)
[2025-12-16 17:10:13] 2025-12-16 22:09:41,785 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-16 17:10:13] 2025-12-16 22:09:41,788 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-12-16 17:10:13] 2025-12-16 22:09:41,791 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6931441133/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 17:10:13] 2025-12-16 22:09:41,791 | INFO     | extracted standard info from prmon json
[2025-12-16 17:10:13] 2025-12-16 22:09:41,791 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 17:10:13] 2025-12-16 22:09:41,792 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 17:10:13] 2025-12-16 22:09:41,792 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 17:10:13] 2025-12-16 22:09:41,792 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 17:10:13] 2025-12-16 22:09:41,794 | INFO     | fitting pss+swap vs Time
[2025-12-16 17:10:13] 2025-12-16 22:09:41,794 | INFO     | sum of square deviations: 226022842.5
[2025-12-16 17:10:13] 2025-12-16 22:09:41,794 | INFO     | sum of deviations: -15331603817.499998
[2025-12-16 17:10:13] 2025-12-16 22:09:41,794 | INFO     | mean x: 1765920094.5
[2025-12-16 17:10:13] 2025-12-16 22:09:41,795 | INFO     | mean y: 2821814.3444444444
[2025-12-16 17:10:13] 2025-12-16 22:09:41,795 | INFO     | intersect: 119788888402.88475
[2025-12-16 17:10:13] 2025-12-16 22:09:41,795 | INFO     | chi2: 0.0701699166596232
[2025-12-16 17:10:13] 2025-12-16 22:09:41,795 | INFO     | current memory leak: -67.83 B/s (using 90 data points, chi2=0.07)
[2025-12-16 17:10:13] 2025-12-16 22:09:41,795 | INFO     | could have reported an average CPU frequency of 2126 MHz (7 samples)
[2025-12-16 17:10:13] 2025-12-16 22:09:41,795 | INFO     | ..............................
[2025-12-16 17:10:13] 2025-12-16 22:09:41,796 | INFO     | . Timing measurements:
[2025-12-16 17:10:13] 2025-12-16 22:09:41,796 | INFO     | . get job = 0 s
[2025-12-16 17:10:13] 2025-12-16 22:09:41,796 | INFO     | . initial setup = 2 s
[2025-12-16 17:10:13] 2025-12-16 22:09:41,796 | INFO     | . payload setup = 7 s
[2025-12-16 17:10:13] 2025-12-16 22:09:41,796 | INFO     | . stage-in = 0 s
[2025-12-16 17:10:13] 2025-12-16 22:09:41,796 | INFO     | . payload execution = 5897 s
[2025-12-16 17:10:13] 2025-12-16 22:09:41,796 | INFO     | . stage-out = 0 s
[2025-12-16 17:10:13] 2025-12-16 22:09:41,796 | INFO     | . log creation = 0 s
[2025-12-16 17:10:13] 2025-12-16 22:09:41,796 | INFO     | ..............................
[2025-12-16 17:10:13] 2025-12-16 22:09:41,876 | INFO     | 
[2025-12-16 17:10:13] 2025-12-16 22:09:41,876 | INFO     | job summary report
[2025-12-16 17:10:13] 2025-12-16 22:09:41,876 | INFO     | --------------------------------------------------
[2025-12-16 17:10:13] 2025-12-16 22:09:41,876 | INFO     | PanDA job id: 6931441133
[2025-12-16 17:10:13] 2025-12-16 22:09:41,877 | INFO     | task id: 47905873
[2025-12-16 17:10:13] 2025-12-16 22:09:41,877 | INFO     | errors: (none)
[2025-12-16 17:10:13] 2025-12-16 22:09:41,877 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 17:10:13] 2025-12-16 22:09:41,877 | INFO     | pilot state: finished 
[2025-12-16 17:10:13] 2025-12-16 22:09:41,877 | INFO     | transexitcode: 0
[2025-12-16 17:10:13] 2025-12-16 22:09:41,877 | INFO     | exeerrorcode: 0
[2025-12-16 17:10:13] 2025-12-16 22:09:41,877 | INFO     | exeerrordiag: 
[2025-12-16 17:10:13] 2025-12-16 22:09:41,877 | INFO     | exitcode: 0
[2025-12-16 17:10:13] 2025-12-16 22:09:41,877 | INFO     | exitmsg: OK
[2025-12-16 17:10:13] 2025-12-16 22:09:41,877 | INFO     | cpuconsumptiontime: 65983 s
[2025-12-16 17:10:13] 2025-12-16 22:09:41,878 | INFO     | nevents: 400
[2025-12-16 17:10:13] 2025-12-16 22:09:41,878 | INFO     | neventsw: 0
[2025-12-16 17:10:13] 2025-12-16 22:09:41,878 | INFO     | pid: 23892
[2025-12-16 17:10:13] 2025-12-16 22:09:41,878 | INFO     | pgrp: 23892
[2025-12-16 17:10:13] 2025-12-16 22:09:41,878 | INFO     | corecount: 12
[2025-12-16 17:10:13] 2025-12-16 22:09:41,878 | INFO     | event service: False
[2025-12-16 17:10:13] 2025-12-16 22:09:41,878 | INFO     | sizes: {0: 2283851, 5: 2284113, 11: 2284169, 5908: 2310853, 5909: 2319851, 5912: 2319907, 5919: 2320229}
[2025-12-16 17:10:13] 2025-12-16 22:09:41,878 | INFO     | --------------------------------------------------
[2025-12-16 17:10:13] 2025-12-16 22:09:41,878 | INFO     | 
[2025-12-16 17:10:13] 2025-12-16 22:09:41,879 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-16 17:10:13] 2025-12-16 22:09:41,901 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 17:10:13] 2025-12-16 22:09:41,902 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 17:10:13] 2025-12-16 22:09:41,902 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 17:10:13] 2025-12-16 22:09:41,902 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 17:10:13] 2025-12-16 22:09:41,902 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 17:10:13] 2025-12-16 22:09:41,902 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 17:10:13] 2025-12-16 22:09:41,903 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 17:10:13] 2025-12-16 22:09:41,903 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 17:10:13] 2025-12-16 22:09:41,903 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 17:10:13] 2025-12-16 22:09:41,903 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 17:10:13] 2025-12-16 22:09:41,903 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 17:10:13] 2025-12-16 22:09:41,903 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 17:10:13] 2025-12-16 22:09:41,904 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 17:10:13] 2025-12-16 22:09:41,904 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 17:10:13] 2025-12-16 22:09:41,904 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 17:10:13] 2025-12-16 22:09:41,904 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 17:10:13] 2025-12-16 22:09:41,904 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 17:10:13] 2025-12-16 22:09:41,904 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 17:10:13] 2025-12-16 22:09:41,905 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 17:10:13] 2025-12-16 22:09:41,905 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 17:10:13] 2025-12-16 22:09:41,905 | INFO     | job 6931441133 has completed (purged errors)
[2025-12-16 17:10:13] 2025-12-16 22:09:41,905 | INFO     | overall cleanup function is called
[2025-12-16 17:10:13] 2025-12-16 22:09:42,914 | INFO     | --- collectZombieJob: --- 10, [23892]
[2025-12-16 17:10:13] 2025-12-16 22:09:42,914 | INFO     | zombie collector waiting for pid 23892
[2025-12-16 17:10:13] 2025-12-16 22:09:42,914 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 17:10:13] 2025-12-16 22:09:42,914 | INFO     | collected zombie processes
[2025-12-16 17:10:13] 2025-12-16 22:09:42,914 | INFO     | will attempt to kill all subprocesses of pid=23892
[2025-12-16 17:10:13] 2025-12-16 22:09:43,006 | INFO     | process IDs to be killed: [23892] (in reverse order)
[2025-12-16 17:10:13] 2025-12-16 22:09:43,057 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 17:10:13] 2025-12-16 22:09:43,058 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 17:10:13] 2025-12-16 22:09:43,061 | INFO     | did not find any defunct processes belonging to 23892
[2025-12-16 17:10:13] 2025-12-16 22:09:43,063 | INFO     | did not find any defunct processes belonging to 23892
[2025-12-16 17:10:13] 2025-12-16 22:09:43,063 | INFO     | ready for new job
[2025-12-16 17:10:13] 2025-12-16 22:09:43,064 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 17:10:13] 2025-12-16 22:09:43,065 | INFO     | ***************************************
[2025-12-16 17:10:13] 2025-12-16 22:09:43,065 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 17:10:13] 2025-12-16 22:09:43,065 | INFO     | ***************************************
[2025-12-16 17:10:13] 2025-12-16 22:09:43,065 | INFO     | 
[2025-12-16 17:10:13] 2025-12-16 22:09:43,065 | INFO     | architecture information:
[2025-12-16 17:10:13] 2025-12-16 22:09:43,066 | INFO     | executing command: cat /etc/os-release
[2025-12-16 17:10:13] 2025-12-16 22:09:43,081 | INFO     | cat /etc/os-release:
[2025-12-16 17:10:13] NAME="CentOS Linux"
[2025-12-16 17:10:13] VERSION="7 (Core)"
[2025-12-16 17:10:13] ID="centos"
[2025-12-16 17:10:13] ID_LIKE="rhel fedora"
[2025-12-16 17:10:13] VERSION_ID="7"
[2025-12-16 17:10:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 17:10:13] ANSI_COLOR="0;31"
[2025-12-16 17:10:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 17:10:13] HOME_URL="https://www.centos.org/"
[2025-12-16 17:10:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 17:10:13] 
[2025-12-16 17:10:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 17:10:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 17:10:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 17:10:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 17:10:13] 
[2025-12-16 17:10:13] 2025-12-16 22:09:43,082 | INFO     | ***************************************
[2025-12-16 17:10:13] 2025-12-16 22:09:43,585 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-16 17:10:13] 2025-12-16 22:09:43,602 | INFO     | sufficient remaining disk space (29369565184 B)
[2025-12-16 17:10:13] 2025-12-16 22:09:43,602 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 17:10:13] 2025-12-16 22:09:43,602 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 17:10:13] 2025-12-16 22:09:43,603 | INFO     | update_server=False
[2025-12-16 17:10:13] 2025-12-16 22:09:43,603 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 17:10:13] 2025-12-16 22:09:43,603 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 17:10:13] 2025-12-16 22:09:43,893 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 17:10:13] 2025-12-16 22:09:43,893 | INFO     | aborting loop
[2025-12-16 17:10:13] 2025-12-16 22:09:44,487 | INFO     | all data control threads have been joined
[2025-12-16 17:10:13] 2025-12-16 22:09:44,608 | INFO     | [job] retrieve thread has finished
[2025-12-16 17:10:13] 2025-12-16 22:09:44,609 | INFO     | [job] queue monitor thread has finished
[2025-12-16 17:10:13] 2025-12-16 22:09:44,682 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 17:10:13] 2025-12-16 22:09:44,784 | INFO     | all payload control threads have been joined
[2025-12-16 17:10:13] 2025-12-16 22:09:44,835 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 17:10:13] 2025-12-16 22:09:44,899 | INFO     | [job] job monitor thread has finished
[2025-12-16 17:10:13] 2025-12-16 22:09:44,911 | INFO     | [payload] validate_post thread has finished
[2025-12-16 17:10:13] 2025-12-16 22:09:44,954 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 17:10:13] 2025-12-16 22:09:45,045 | INFO     | all job control threads have been joined
[2025-12-16 17:10:13] 2025-12-16 22:09:45,112 | INFO     | [data] copytool_in thread has finished
[2025-12-16 17:10:13] 2025-12-16 22:09:45,200 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 17:10:13] 2025-12-16 22:09:45,490 | INFO     | [data] control thread has finished
[2025-12-16 17:10:13] 2025-12-16 22:09:45,790 | INFO     | [payload] control thread has finished
[2025-12-16 17:10:13] 2025-12-16 22:09:45,819 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 17:10:13] 2025-12-16 22:09:45,949 | INFO     | [payload] failed_post thread has finished
[2025-12-16 17:10:13] 2025-12-16 22:09:46,025 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 17:10:13] 2025-12-16 22:09:46,034 | INFO     | [job] validate thread has finished
[2025-12-16 17:10:13] 2025-12-16 22:09:46,049 | INFO     | [job] control thread has finished
[2025-12-16 17:10:13] 2025-12-16 22:09:46,960 | INFO     | [data] copytool_out thread has finished
[2025-12-16 17:10:13] 2025-12-16 22:09:49,823 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 17:10:13] 2025-12-16 22:09:55,324 | INFO     | [monitor] cgroup control has ended
[2025-12-16 17:10:13] 2025-12-16 22:09:56,683 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140568655533888)>', '<ExcThread(monitor, started 140567744857856)>']
[2025-12-16 17:10:13] 2025-12-16 22:10:01,684 | INFO     | all workflow threads have been joined
[2025-12-16 17:10:13] 2025-12-16 22:10:01,684 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 17:10:13] 2025-12-16 22:10:01,684 | INFO     | traces error code: 0
[2025-12-16 17:10:13] 2025-12-16 22:10:01,684 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 17:10:13] 2025-12-16 22:10:13,699 | INFO     | PID=17458 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 17:10:13] 2025-12-16 22:10:13,700 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 17:10:13] 2025-12-16 22:10:13,700 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 17:10:13] 2025-12-16 22:10:13,700 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 17:10:13] 2025-12-16 22:10:13,700 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 17:10:13] 2025-12-16 22:10:13,700 | INFO     | [monitor] control thread has ended
[2025-12-16 17:10:13] 2025-12-16 22:10:13,784 [wrapper] ==== pilot stdout END ====
[2025-12-16 17:10:13] 2025-12-16 22:10:13,788 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 17:10:13] 2025-12-16 22:10:13,792 [wrapper] pilotpid: 17458
[2025-12-16 17:10:13] 2025-12-16 22:10:13,795 [wrapper] Pilot exit status: 0
[2025-12-16 17:10:13] 2025-12-16 22:10:13,810 [wrapper] pandaids: 6931441133
[2025-12-16 17:10:13] 2025-12-16 22:10:13,847 [wrapper] cleanup supervisor_pilot 22909 17459
[2025-12-16 17:10:13] 2025-12-16 22:10:13,851 [wrapper] Test setup, not cleaning
[2025-12-16 17:10:13] 2025-12-16 22:10:13,855 [wrapper] apfmon messages muted
[2025-12-16 17:10:13] 2025-12-16 22:10:13,859 [wrapper] ==== wrapper stdout END ====
[2025-12-16 17:10:13] 2025-12-16 22:10:13,863 [wrapper] ==== wrapper stderr END ====
[2025-12-16 17:10:13]  *** Error codes and diagnostics ***
[2025-12-16 17:10:13]     "exeErrorCode": 0,
[2025-12-16 17:10:13]     "exeErrorDiag": "",
[2025-12-16 17:10:13]     "pilotErrorCode": 0,
[2025-12-16 17:10:13]     "pilotErrorDiag": "",
[2025-12-16 17:10:13]  *** Listing of results directory ***
[2025-12-16 17:10:14] total 409608
[2025-12-16 17:10:14] -rw-r--r-- 1 boincer umatlas    579449 Dec 16 10:02 pilot3.tar.gz
[2025-12-16 17:10:14] -rwx------ 1 boincer umatlas     36322 Dec 16 10:05 runpilot2-wrapper.sh
[2025-12-16 17:10:14] -rw-r--r-- 1 boincer umatlas      5112 Dec 16 10:07 queuedata.json
[2025-12-16 17:10:14] -rw-r--r-- 1 boincer umatlas       100 Dec 16 15:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 17:10:14] -rwxr-xr-x 1 boincer umatlas      7986 Dec 16 15:30 run_atlas
[2025-12-16 17:10:14] -rw-r--r-- 1 boincer umatlas       105 Dec 16 15:30 job.xml
[2025-12-16 17:10:14] -rw-r--r-- 2 boincer umatlas 204262825 Dec 16 15:30 EVNT.47905871._000020.pool.root.1
[2025-12-16 17:10:14] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 15:30 start_atlas.sh
[2025-12-16 17:10:14] drwxrwx--x 2 boincer umatlas      4096 Dec 16 15:30 shared
[2025-12-16 17:10:14] -rw-r--r-- 2 boincer umatlas    592375 Dec 16 15:30 input.tar.gz
[2025-12-16 17:10:14] -rw-r--r-- 1 boincer umatlas         0 Dec 16 15:30 boinc_lockfile
[2025-12-16 17:10:14] -rw-r--r-- 1 boincer umatlas      2468 Dec 16 15:30 pandaJob.out
[2025-12-16 17:10:14] -rw------- 1 boincer umatlas        57 Dec 16 15:30 setup.sh.local
[2025-12-16 17:10:14] -rw------- 1 boincer umatlas    987409 Dec 16 15:30 agis_schedconf.cvmfs.json
[2025-12-16 17:10:14] -rw------- 1 boincer umatlas   1516240 Dec 16 15:30 agis_ddmendpoints.agis.ALL.json
[2025-12-16 17:10:14] drwx------ 5 boincer umatlas      4096 Dec 16 15:30 pilot3
[2025-12-16 17:10:14] -rw-r--r-- 1 boincer umatlas      5953 Dec 16 17:02 init_data.xml
[2025-12-16 17:10:14] -rw------- 1 boincer umatlas 208740671 Dec 16 17:08 HITS.47905873._000499.pool.root.1
[2025-12-16 17:10:14] -rw-r--r-- 1 boincer umatlas       529 Dec 16 17:09 boinc_task_state.xml
[2025-12-16 17:10:14] -rw------- 1 boincer umatlas      1047 Dec 16 17:09 memory_monitor_summary.json
[2025-12-16 17:10:14] -rw------- 1 boincer umatlas    415147 Dec 16 17:09 log.47905873._000499.job.log.tgz.1
[2025-12-16 17:10:14] -rw------- 1 boincer umatlas      7847 Dec 16 17:09 heartbeat.json
[2025-12-16 17:10:14] -rw-r--r-- 1 boincer umatlas        27 Dec 16 17:09 wrapper_checkpoint.txt
[2025-12-16 17:10:14] -rw-r--r-- 1 boincer umatlas      8192 Dec 16 17:09 boinc_mmap_file
[2025-12-16 17:10:14] -rw------- 1 boincer umatlas       745 Dec 16 17:10 pilotlog.txt
[2025-12-16 17:10:14] -rw------- 1 boincer umatlas        95 Dec 16 17:10 pilot_heartbeat.json
[2025-12-16 17:10:14] -rw------- 1 boincer umatlas    844863 Dec 16 17:10 log.47905873._000499.job.log.1
[2025-12-16 17:10:14] -rw------- 1 boincer umatlas       357 Dec 16 17:10 output.list
[2025-12-16 17:10:14] -rw-r--r-- 1 boincer umatlas       620 Dec 16 17:10 runtime_log
[2025-12-16 17:10:14] -rw------- 1 boincer umatlas   1280000 Dec 16 17:10 result.tar.gz
[2025-12-16 17:10:14] -rw-r--r-- 1 boincer umatlas      9344 Dec 16 17:10 runtime_log.err
[2025-12-16 17:10:14] -rw------- 1 boincer umatlas       659 Dec 16 17:10 D6HNDmfnlp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmUrVKDmeZasnn.diag
[2025-12-16 17:10:14] -rw-r--r-- 1 boincer umatlas     22106 Dec 16 17:10 stderr.txt
[2025-12-16 17:10:14] HITS file was successfully produced:
[2025-12-16 17:10:14] -rw------- 1 boincer umatlas 208740671 Dec 16 17:08 shared/HITS.pool.root.1
[2025-12-16 17:10:14]  *** Contents of shared directory: ***
[2025-12-16 17:10:14] total 405180
[2025-12-16 17:10:14] -rw-r--r-- 2 boincer umatlas 204262825 Dec 16 15:30 ATLAS.root_0
[2025-12-16 17:10:14] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 15:30 start_atlas.sh
[2025-12-16 17:10:14] -rw-r--r-- 2 boincer umatlas    592375 Dec 16 15:30 input.tar.gz
[2025-12-16 17:10:14] -rw------- 1 boincer umatlas 208740671 Dec 16 17:08 HITS.pool.root.1
[2025-12-16 17:10:14] -rw------- 1 boincer umatlas   1280000 Dec 16 17:10 result.tar.gz
17:10:15 (13422): run_atlas exited; CPU time 65958.740204
17:10:15 (13422): called boinc_finish(0)

</stderr_txt>
]]>

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