Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:23:25 (2473701): wrapper (7.7.26015): starting
11:23:25 (2473701): wrapper: running run_atlas (--nthreads 4)
[2025-12-17 11:23:25] Arguments: --nthreads 4
[2025-12-17 11:23:25] Threads: 4
[2025-12-17 11:23:25] Checking for CVMFS
[2025-12-17 11:23:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 11:23:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 11:23:25] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 11:23:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 11:23:25] 2.9.2.0 382260 5738 95336 154109 2 57 25455316 36864001 0 130560 0 4491127 99.991 213878 16347 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-17 11:23:25] CVMFS is ok
[2025-12-17 11:23:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 11:23:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 11:23:25] Further information can be found at the LHC@home message board.
[2025-12-17 11:23:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 11:23:25] Checking for apptainer binary...
[2025-12-17 11:23:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 11:23:25] Running /usr/bin/apptainer --version
[2025-12-17 11:23:25] apptainer version 1.4.1-1.1
[2025-12-17 11:23:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 11:23:25] atlasA237
[2025-12-17 11:23:25] apptainer works
[2025-12-17 11:23:25] Set ATHENA_PROC_NUMBER=4
[2025-12-17 11:23:25] Set ATHENA_CORE_NUMBER=4
[2025-12-17 11:23:25] Starting ATLAS job with PandaID=6931484141
[2025-12-17 11:23:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 13:00:47]  *** The last 200 lines of the pilot log: ***
[2025-12-17 13:00:47] 2025-12-17 11:59:49,815 | INFO     | all payload control threads have been joined
[2025-12-17 13:00:47] 2025-12-17 11:59:49,852 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 13:00:47] 2025-12-17 11:59:49,852 | INFO     | aborting loop
[2025-12-17 13:00:47] 2025-12-17 11:59:49,855 | INFO     | all job control threads have been joined
[2025-12-17 13:00:47] 2025-12-17 11:59:50,202 | INFO     | [job] queue monitor thread has finished
[2025-12-17 13:00:47] 2025-12-17 11:59:50,204 | INFO     | [job] retrieve thread has finished
[2025-12-17 13:00:47] 2025-12-17 11:59:50,602 | INFO     | [job] validate thread has finished
[2025-12-17 13:00:47] 2025-12-17 11:59:50,721 | INFO     | [data] control thread has finished
[2025-12-17 13:00:47] 2025-12-17 11:59:50,746 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 13:00:47] 2025-12-17 11:59:50,821 | INFO     | [payload] control thread has finished
[2025-12-17 13:00:47] 2025-12-17 11:59:50,823 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 13:00:47] 2025-12-17 11:59:50,858 | INFO     | [job] control thread has finished
[2025-12-17 13:00:47] 2025-12-17 11:59:50,858 | INFO     | [job] job monitor thread has finished
[2025-12-17 13:00:47] 2025-12-17 11:59:51,018 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 13:00:47] 2025-12-17 11:59:51,245 | INFO     | [data] copytool_in thread has finished
[2025-12-17 13:00:47] 2025-12-17 11:59:51,433 | INFO     | [data] copytool_out thread has finished
[2025-12-17 13:00:47] 2025-12-17 11:59:51,654 | INFO     | [payload] validate_post thread has finished
[2025-12-17 13:00:47] 2025-12-17 11:59:51,701 | INFO     | [payload] failed_post thread has finished
[2025-12-17 13:00:47] 2025-12-17 11:59:53,798 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 13:00:47] 2025-12-17 11:59:59,374 | INFO     | job.realtimelogging is not enabled
[2025-12-17 13:00:47] 2025-12-17 12:00:00,379 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 13:00:47] 2025-12-17 12:00:20,151 | INFO     | PID=2477502 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-17 13:00:47] 2025-12-17 12:00:20,152 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 13:00:47] 2025-12-17 12:00:20,152 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 13:00:47] 2025-12-17 12:00:20,152 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 13:00:47] 2025-12-17 12:00:39,797 | INFO     | [monitor] cgroup control has ended
[2025-12-17 13:00:47] 2025-12-17 12:00:41,874 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140352674498368)>', '<ExcThread(monitor, started 140351713031936)>']
[2025-12-17 13:00:47] 2025-12-17 12:00:42,269 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 13:00:47] 2025-12-17 12:00:42,269 | INFO     | [monitor] control thread has ended
[2025-12-17 13:00:47] 2025-12-17 12:00:46,900 | INFO     | all workflow threads have been joined
[2025-12-17 13:00:47] 2025-12-17 12:00:46,900 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 13:00:47] 2025-12-17 12:00:46,900 | INFO     | traces error code: 0
[2025-12-17 13:00:47] 2025-12-17 12:00:46,900 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 13:00:47] 2025-12-17 12:00:46,970 [wrapper] ==== pilot stdout END ====
[2025-12-17 13:00:47] 2025-12-17 12:00:46,974 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 13:00:47] 2025-12-17 12:00:46,977 [wrapper] pilotpid: 2477502
[2025-12-17 13:00:47] 2025-12-17 12:00:46,981 [wrapper] Pilot exit status: 0
[2025-12-17 13:00:47] 2025-12-17 12:00:46,992 [wrapper] pandaids: 6931484141
[2025-12-17 13:00:47] 2025-12-17 12:00:47,019 [wrapper] cleanup supervisor_pilot 2502506 2477503
[2025-12-17 13:00:47] 2025-12-17 12:00:47,022 [wrapper] Test setup, not cleaning
[2025-12-17 13:00:47] 2025-12-17 12:00:47,026 [wrapper] apfmon messages muted
[2025-12-17 13:00:47] 2025-12-17 12:00:47,030 [wrapper] ==== wrapper stdout END ====
[2025-12-17 13:00:47] 2025-12-17 12:00:47,033 [wrapper] ==== wrapper stderr END ====
[2025-12-17 13:00:47]  *** Error codes and diagnostics ***
[2025-12-17 13:00:47]     "exeErrorCode": 0,
[2025-12-17 13:00:47]     "exeErrorDiag": "",
[2025-12-17 13:00:47]     "pilotErrorCode": 0,
[2025-12-17 13:00:47]     "pilotErrorDiag": "",
[2025-12-17 13:00:47]  *** Listing of results directory ***
[2025-12-17 13:00:47] total 400248
[2025-12-17 13:00:47] -rw-r--r-- 1 boinc boinc    579449 Dec 16 16:02 pilot3.tar.gz
[2025-12-17 13:00:47] -rwx------ 1 boinc boinc     36322 Dec 16 16:02 runpilot2-wrapper.sh
[2025-12-17 13:00:47] -rw-r--r-- 1 boinc boinc      5112 Dec 16 16:03 queuedata.json
[2025-12-17 13:00:47] -rw-r--r-- 1 boinc boinc       100 Dec 17 11:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 13:00:47] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 11:23 run_atlas
[2025-12-17 13:00:47] -rw-r--r-- 1 boinc boinc       105 Dec 17 11:23 job.xml
[2025-12-17 13:00:47] -rw-r--r-- 2 boinc boinc 199155863 Dec 17 11:23 EVNT.47905839._000011.pool.root.1
[2025-12-17 13:00:47] -rw-r--r-- 2 boinc boinc    592372 Dec 17 11:23 input.tar.gz
[2025-12-17 13:00:47] -rw-r--r-- 2 boinc boinc     15847 Dec 17 11:23 start_atlas.sh
[2025-12-17 13:00:47] drwxrwx--x 2 boinc boinc      4096 Dec 17 11:23 shared
[2025-12-17 13:00:47] -rw-r--r-- 1 boinc boinc         0 Dec 17 11:23 boinc_setup_complete
[2025-12-17 13:00:47] -rw-r--r-- 1 boinc boinc      6372 Dec 17 11:23 init_data.xml
[2025-12-17 13:00:47] -rw-r--r-- 1 boinc boinc         0 Dec 17 11:23 boinc_lockfile
[2025-12-17 13:00:47] -rw-r--r-- 1 boinc boinc      2450 Dec 17 11:23 pandaJob.out
[2025-12-17 13:00:47] -rw------- 1 boinc boinc    987423 Dec 17 11:23 agis_schedconf.cvmfs.json
[2025-12-17 13:00:47] -rw------- 1 boinc boinc   1516240 Dec 17 11:23 agis_ddmendpoints.agis.ALL.json
[2025-12-17 13:00:47] drwx------ 5 boinc boinc      4096 Dec 17 11:23 pilot3
[2025-12-17 13:00:47] -rw------- 1 boinc boinc 204564246 Dec 17 12:59 HITS.47905841._000259.pool.root.1
[2025-12-17 13:00:47] -rw-r--r-- 1 boinc boinc       529 Dec 17 12:59 boinc_task_state.xml
[2025-12-17 13:00:47] -rw------- 1 boinc boinc      1021 Dec 17 12:59 memory_monitor_summary.json
[2025-12-17 13:00:47] -rw------- 1 boinc boinc    276813 Dec 17 12:59 log.47905841._000259.job.log.tgz.1
[2025-12-17 13:00:47] -rw------- 1 boinc boinc      7775 Dec 17 12:59 heartbeat.json
[2025-12-17 13:00:47] -rw------- 1 boinc boinc        95 Dec 17 13:00 pilot_heartbeat.json
[2025-12-17 13:00:47] -rw-r--r-- 1 boinc boinc      8192 Dec 17 13:00 boinc_mmap_file
[2025-12-17 13:00:47] -rw-r--r-- 1 boinc boinc        27 Dec 17 13:00 wrapper_checkpoint.txt
[2025-12-17 13:00:47] -rw------- 1 boinc boinc      4824 Dec 17 13:00 pilotlog.txt
[2025-12-17 13:00:47] -rw------- 1 boinc boinc    839287 Dec 17 13:00 log.47905841._000259.job.log.1
[2025-12-17 13:00:47] -rw------- 1 boinc boinc       357 Dec 17 13:00 output.list
[2025-12-17 13:00:47] -rw-r--r-- 1 boinc boinc       620 Dec 17 13:00 runtime_log
[2025-12-17 13:00:47] -rw------- 1 boinc boinc   1136640 Dec 17 13:00 result.tar.gz
[2025-12-17 13:00:47] -rw------- 1 boinc boinc       662 Dec 17 13:00 XmxLDmkklp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmalVKDmSJoWVm.diag
[2025-12-17 13:00:47] -rw-r--r-- 1 boinc boinc      8912 Dec 17 13:00 runtime_log.err
[2025-12-17 13:00:47] -rw-r--r-- 1 boinc boinc      6800 Dec 17 13:00 stderr.txt
[2025-12-17 13:00:47] HITS file was successfully produced:
[2025-12-17 13:00:47] -rw------- 1 boinc boinc 204564246 Dec 17 12:59 shared/HITS.pool.root.1
[2025-12-17 13:00:47]  *** Contents of shared directory: ***
[2025-12-17 13:00:47] total 395980
[2025-12-17 13:00:47] -rw-r--r-- 2 boinc boinc 199155863 Dec 17 11:23 ATLAS.root_0
[2025-12-17 13:00:47] -rw-r--r-- 2 boinc boinc    592372 Dec 17 11:23 input.tar.gz
[2025-12-17 13:00:47] -rw-r--r-- 2 boinc boinc     15847 Dec 17 11:23 start_atlas.sh
[2025-12-17 13:00:47] -rw------- 1 boinc boinc 204564246 Dec 17 12:59 HITS.pool.root.1
[2025-12-17 13:00:47] -rw------- 1 boinc boinc   1136640 Dec 17 13:00 result.tar.gz
13:00:48 (2473701): run_atlas exited; CPU time 22091.162995
13:00:48 (2473701): called boinc_finish(0)

</stderr_txt>
]]>

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