Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-12-16 11:40:24 (40028): vboxwrapper version 26210
2025-12-16 11:40:24 (40028): BOINC client version: 8.2.4
2025-12-16 11:40:24 (40028): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-12-16 11:40:25 (40028): Successfully copied 'init_data.xml' to the shared directory.
2025-12-16 11:40:26 (40028): Create VM. (boinc_697fc9dbf2b77717, slot#3)
2025-12-16 11:40:27 (40028): Setting Memory Size for VM. (4800MB)
2025-12-16 11:40:27 (40028): Setting CPU Count for VM. (8)
2025-12-16 11:40:28 (40028): Setting Chipset Options for VM.
2025-12-16 11:40:29 (40028): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-12-16 11:40:29 (40028): Setting Boot Options for VM.
2025-12-16 11:40:30 (40028): Setting Network Configuration for NAT. (Driver: virtio)
2025-12-16 11:40:31 (40028): Enabling VM Network Access.
2025-12-16 11:40:31 (40028): Disabling USB Support for VM.
2025-12-16 11:40:32 (40028): Disabling COM Port Support for VM.
2025-12-16 11:40:33 (40028): Disabling LPT Port Support for VM.
2025-12-16 11:40:33 (40028): Disabling Audio Support for VM.
2025-12-16 11:40:34 (40028): Disabling Clipboard Support for VM.
2025-12-16 11:40:34 (40028): Disabling Drag and Drop Support for VM.
2025-12-16 11:40:34 (40028): Adding storage controller(s) to VM.
2025-12-16 11:40:35 (40028): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-12-16 11:40:36 (40028): Adding VirtualBox Guest Additions to VM.
2025-12-16 11:40:37 (40028): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-12-16 11:40:38 (40028): forwarding host port 49846 to guest port 80
2025-12-16 11:40:38 (40028): Enabling remote desktop for VM.
2025-12-16 11:40:38 (40028): Required extension pack not installed, remote desktop not enabled.
2025-12-16 11:40:38 (40028): Enabling shared directory for VM.
2025-12-16 11:40:39 (40028): Starting VM using VBoxManage interface. (boinc_697fc9dbf2b77717, slot#3)
2025-12-16 11:40:47 (40028): Successfully started VM. (PID = '40656')
2025-12-16 11:40:47 (40028): Reporting VM Process ID to BOINC.
2025-12-16 11:40:47 (40028): Guest Log: BIOS: VirtualBox 7.0.6
2025-12-16 11:40:47 (40028): Guest Log: CPUID EDX: 0x178bfbff
2025-12-16 11:40:47 (40028): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-12-16 11:40:47 (40028): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-12-16 11:40:47 (40028): VM state change detected. (old = 'poweredoff', new = 'running')
2025-12-16 11:40:47 (40028): Detected: Web Application Enabled (http://localhost:49846)
2025-12-16 11:40:47 (40028): Preference change detected
2025-12-16 11:40:47 (40028): Setting CPU throttle for VM. (100%)
2025-12-16 11:40:47 (40028): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-12-16 11:40:49 (40028): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-12-16 11:40:49 (40028): Guest Log: BIOS: Booting from Hard Disk...
2025-12-16 11:40:55 (40028): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-12-16 11:40:55 (40028): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-12-16 11:40:55 (40028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-12-16 11:41:17 (40028): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-12-16 11:41:17 (40028): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-12-16 11:42:02 (40028): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-12-16 11:42:02 (40028): Guest Log: 00:00:00.000222 main     Log opened 2025-12-16T11:41:59.841716000Z
2025-12-16 11:42:02 (40028): Guest Log: 00:00:00.000368 main     OS Product: Linux
2025-12-16 11:42:02 (40028): Guest Log: 00:00:00.000406 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-12-16 11:42:02 (40028): Guest Log: 00:00:00.000435 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-12-16 11:42:02 (40028): Guest Log: 00:00:00.000465 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-12-16 11:42:02 (40028): Guest Log: 00:00:00.000466 main     Process ID: 1379
2025-12-16 11:42:02 (40028): Guest Log: 00:00:00.000466 main     Package type: LINUX_64BITS_GENERIC
2025-12-16 11:42:02 (40028): Guest Log: 00:00:00.024514 main     5.2.32 r132073 started. Verbose level = 0
2025-12-16 11:42:03 (40028): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-12-16 11:42:03 (40028): Guest Log: [INFO] Mounting shared directory
2025-12-16 11:42:04 (40028): Guest Log: [INFO] Checking for init_data.xml
2025-12-16 11:42:11 (40028): Guest Log: 00:00:10.067952 timesync vgsvcTimeSyncWorker: Radical guest time change: 28 812 010 978 000ns (GuestNow=1 765 914 131 917 686 000 ns GuestLast=1 765 885 319 906 708 000 ns fSetTimeLastLoop=true )
2025-12-16 11:42:14 (40028): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-12-16 11:42:14 (40028): Guest Log: [INFO] Detected branch: prod
2025-12-16 11:42:15 (40028): Guest Log: This is the prod version of the ATLAS job wrapper
2025-12-16 11:42:15 (40028): Guest Log: Copying input files
2025-12-16 11:42:36 (40028): Guest Log: Copied input files into RunAtlas.
2025-12-16 11:42:37 (40028): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-12-16 11:42:37 (40028): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-12-16 11:42:37 (40028): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-12-16 11:42:37 (40028): Guest Log: Further information can be found at the LHC@home message board.
2025-12-16 11:42:47 (40028): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-12-16 11:42:49 (40028): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-12-16 11:42:49 (40028): Guest Log: 2.6.3.0 1679 0 32088 154084 3 1 3117737 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-12-16 11:42:56 (40028): Guest Log: copied the webapp to /var/www
2025-12-16 11:42:57 (40028): Guest Log: ATHENA_PROC_NUMBER=8
2025-12-16 11:42:57 (40028): Guest Log: ATHENA_CORE_NUMBER=8
2025-12-16 11:42:58 (40028): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-12-16 11:42:58 (40028): Guest Log:  *** Starting ATLAS job. (PandaID=6930228572 taskID=47898782) ***
2025-12-16 13:12:44 (40028): VM state change detected. (old = 'running', new = 'paused')
2025-12-16 16:17:41 (40028): VM state change detected. (old = 'paused', new = 'running')
2025-12-16 16:17:46 (40028): Guest Log: 01:30:45.341660 timesync vgsvcTimeSyncWorker: Radical host time change: 11 099 312 000 000ns (HostNow=1 765 930 647 229 000 000 ns HostLast=1 765 919 547 917 000 000 ns)
2025-12-16 16:17:56 (40028): Guest Log: 01:30:55.346305 timesync vgsvcTimeSyncWorker: Radical guest time change: 11 090 054 241 000ns (GuestNow=1 765 930 657 239 658 000 ns GuestLast=1 765 919 567 185 417 000 ns fSetTimeLastLoop=true )
2025-12-16 16:26:07 (40028): Status Report: Elapsed Time: '6000.000000'
2025-12-16 16:26:07 (40028): Status Report: CPU Time: '30186.500000'
2025-12-16 17:06:33 (40028): Guest Log:  *** Job finished ***
2025-12-16 17:06:33 (40028): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-12-16 17:06:33 (40028): Guest Log: 2025-12-17 01:06:11,561 | INFO     | PID=6155 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-12-16 17:06:33 (40028): Guest Log: 2025-12-17 01:06:11,562 | INFO     | found 0 job(s) in 20 queues
2025-12-16 17:06:33 (40028): Guest Log: 2025-12-17 01:06:11,562 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-12-16 17:06:33 (40028): Guest Log: 2025-12-17 01:06:11,562 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-12-16 17:06:33 (40028): Guest Log: 2025-12-17 01:06:11,562 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-12-16 17:06:33 (40028): Guest Log: 2025-12-17 01:06:11,562 | INFO     | [monitor] control thread has ended
2025-12-16 17:06:33 (40028): Guest Log: 2025-12-17 01:06:12,773 | INFO     | all workflow threads have been joined
2025-12-16 17:06:33 (40028): Guest Log: 2025-12-17 01:06:12,774 | INFO     | end of generic workflow (traces error code: 0)
2025-12-16 17:06:33 (40028): Guest Log: 2025-12-17 01:06:12,774 | INFO     | traces error code: 0
2025-12-16 17:06:33 (40028): Guest Log: 2025-12-17 01:06:12,774 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-12-16 17:06:33 (40028): Guest Log: 2025-12-17 01:06:12,875 [wrapper] ==== pilot stdout END ====
2025-12-16 17:06:33 (40028): Guest Log: 2025-12-17 01:06:12,887 [wrapper] ==== wrapper stdout RESUME ====
2025-12-16 17:06:33 (40028): Guest Log: 2025-12-17 01:06:12,895 [wrapper] pilotpid: 6155
2025-12-16 17:06:33 (40028): Guest Log: 2025-12-17 01:06:12,903 [wrapper] Pilot exit status: 0
2025-12-16 17:06:33 (40028): Guest Log: 2025-12-17 01:06:12,956 [wrapper] pandaids: 6930228572
2025-12-16 17:06:33 (40028): Guest Log: 2025-12-17 01:06:13,008 [wrapper] cleanup supervisor_pilot  5367 6156
2025-12-16 17:06:33 (40028): Guest Log: 2025-12-17 01:06:13,015 [wrapper] Test setup, not cleaning
2025-12-16 17:06:33 (40028): Guest Log: 2025-12-17 01:06:13,023 [wrapper] apfmon messages muted
2025-12-16 17:06:33 (40028): Guest Log: 2025-12-17 01:06:13,033 [wrapper] ==== wrapper stdout END ====
2025-12-16 17:06:33 (40028): Guest Log: 2025-12-17 01:06:13,039 [wrapper] ==== wrapper stderr END ====
2025-12-16 17:06:33 (40028): Guest Log:  *** Error codes and diagnostics ***
2025-12-16 17:06:33 (40028): Guest Log:     "exeErrorCode": 0,
2025-12-16 17:06:33 (40028): Guest Log:     "exeErrorDiag": "",
2025-12-16 17:06:33 (40028): Guest Log:     "pilotErrorCode": 0,
2025-12-16 17:06:33 (40028): Guest Log:     "pilotErrorDiag": "",
2025-12-16 17:06:33 (40028): Guest Log:  *** Listing of results directory ***
2025-12-16 17:06:33 (40028): Guest Log: total 204796
2025-12-16 17:06:33 (40028): Guest Log: -rw-r--r--. 1 atlas atlas    579449 Dec 16 02:06 pilot3.tar.gz
2025-12-16 17:06:33 (40028): Guest Log: -rwx------. 1 atlas atlas     36322 Dec 16 02:06 runpilot2-wrapper.sh
2025-12-16 17:06:33 (40028): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Dec 16 02:07 queuedata.json
2025-12-16 17:06:33 (40028): Guest Log: -rwxr-xr-x. 1 atlas atlas      9541 Dec 16 19:42 init_data.xml
2025-12-16 17:06:33 (40028): Guest Log: -rwxr-xr-x. 1 atlas atlas    592394 Dec 16 19:42 input.tar.gz
2025-12-16 17:06:33 (40028): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Dec 16 19:42 start_atlas.sh
2025-12-16 17:06:33 (40028): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Dec 16 19:42 EVNT.47898779._000178.pool.root.1 -> /data/./ATLAS.root_0
2025-12-16 17:06:33 (40028): Guest Log: -rw-r--r--. 1 atlas atlas      2522 Dec 16 19:42 pandaJob.out
2025-12-16 17:06:33 (40028): Guest Log: -rw-------. 1 atlas atlas    987409 Dec 16 19:47 agis_schedconf.cvmfs.json
2025-12-16 17:06:33 (40028): Guest Log: drwx------. 5 atlas atlas      4096 Dec 16 19:47 pilot3
2025-12-16 17:06:33 (40028): Guest Log: -rw-------. 1 atlas atlas 203038250 Dec 17 01:04 HITS.47898782._004356.pool.root.1
2025-12-16 17:06:33 (40028): Guest Log: -rw-------. 1 atlas atlas      1026 Dec 17 01:05 memory_monitor_summary.json
2025-12-16 17:06:33 (40028): Guest Log: -rw-------. 1 atlas atlas   1516240 Dec 17 01:05 agis_ddmendpoints.agis.ALL.json
2025-12-16 17:06:33 (40028): Guest Log: -rw-------. 1 atlas atlas    366614 Dec 17 01:05 log.47898782._004356.job.log.tgz.1
2025-12-16 17:06:33 (40028): Guest Log: -rw-------. 1 atlas atlas      7788 Dec 17 01:05 heartbeat.json
2025-12-16 17:06:33 (40028): Guest Log: -rw-------. 1 atlas atlas        98 Dec 17 01:06 pilot_heartbeat.json
2025-12-16 17:06:33 (40028): Guest Log: -rw-------. 1 atlas atlas      4805 Dec 17 01:06 pilotlog.txt
2025-12-16 17:06:33 (40028): Guest Log: -rw-------. 1 atlas atlas   1050805 Dec 17 01:06 log.47898782._004356.job.log.1
2025-12-16 17:06:33 (40028): Guest Log: -rw-------. 1 atlas atlas       357 Dec 17 01:06 output.list
2025-12-16 17:06:33 (40028): Guest Log: -rw-r--r--. 1 atlas atlas       620 Dec 17 01:06 runtime_log
2025-12-16 17:06:33 (40028): Guest Log: -rw-------. 1 atlas atlas   1433600 Dec 17 01:06 result.tar.gz
2025-12-16 17:06:33 (40028): Guest Log: -rw-r--r--. 1 atlas atlas      8765 Dec 17 01:06 runtime_log.err
2025-12-16 17:06:33 (40028): Guest Log: -rw-------. 1 atlas atlas       663 Dec 17 01:06 J7iMDmtdZp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm75YKDmv7AVan.diag
2025-12-16 17:06:33 (40028): Guest Log: Looking for outputfile HITS.47898782._004356.pool.root.1
2025-12-16 17:06:33 (40028): Guest Log: HITS file was successfully produced
2025-12-16 17:06:33 (40028): Guest Log: -rw-------. 1 atlas atlas 203038250 Dec 17 01:04 /home/atlas/RunAtlas/HITS.47898782._004356.pool.root.1
2025-12-16 17:06:34 (40028): Guest Log: Successfully finished the ATLAS job!
2025-12-16 17:06:34 (40028): Guest Log: Copying the results back to the shared directory!
2025-12-16 17:06:34 (40028): Guest Log:  *** Contents of shared directory: ***
2025-12-16 17:06:34 (40028): Guest Log: total 409520
2025-12-16 17:06:34 (40028): Guest Log: -rwxrwxrwx. 1 root root 214253338 Dec 16 19:40 ATLAS.root_0
2025-12-16 17:06:34 (40028): Guest Log: -rwxrwxrwx. 1 root root 203038250 Dec 17  2025 HITS.pool.root.1
2025-12-16 17:06:34 (40028): Guest Log: -rwxrwxrwx. 1 root root      9541 Dec 16 19:40 init_data.xml
2025-12-16 17:06:34 (40028): Guest Log: -rwxrwxrwx. 1 root root    592394 Dec 16 19:24 input.tar.gz
2025-12-16 17:06:34 (40028): Guest Log: -rwxrwxrwx. 1 root root   1433600 Dec 17  2025 result.tar.gz
2025-12-16 17:06:34 (40028): Guest Log: -rwxrwxrwx. 1 root root     15847 Dec 16 19:24 start_atlas.sh
2025-12-16 17:06:34 (40028): Guest Log:  *** Success! Shutting down the machine. ***
2025-12-16 17:06:34 (40028): VM Completion File Detected.
2025-12-16 17:06:34 (40028): Powering off VM.
2025-12-16 17:06:35 (40028): Successfully stopped VM.
2025-12-16 17:06:35 (40028): Deregistering VM. (boinc_697fc9dbf2b77717, slot#3)
2025-12-16 17:06:35 (40028): Removing network bandwidth throttle group from VM.
2025-12-16 17:06:36 (40028): Removing VM from VirtualBox.
2025-12-16 17:06:41 (40028): called boinc_finish(0)

</stderr_txt>
]]>

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