Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:12:24 (3050263): wrapper (7.7.26015): starting
15:12:24 (3050263): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 15:12:24] Arguments: --nthreads 8
[2025-12-16 15:12:24] Threads: 8
[2025-12-16 15:12:24] Checking for CVMFS
[2025-12-16 15:12:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 15:12:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 15:12:26] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 15:12:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 15:12:27] 2.13.3.0 5641 19974 315240 154084 3 578 21948151 32935937 18070 16776704 0 51537334 99.211 101136795 37091 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-16 15:12:27] CVMFS is ok
[2025-12-16 15:12:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 15:12:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 15:12:27] Further information can be found at the LHC@home message board.
[2025-12-16 15:12:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 15:12:27] Checking for apptainer binary...
[2025-12-16 15:12:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 15:12:27] Running /usr/bin/apptainer --version
[2025-12-16 15:12:27] apptainer version 1.4.5-2.el9
[2025-12-16 15:12:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 15:12:28] c6-1-26-1.aglt2.org
[2025-12-16 15:12:28] apptainer works
[2025-12-16 15:12:28] Set ATHENA_PROC_NUMBER=8
[2025-12-16 15:12:28] Set ATHENA_CORE_NUMBER=8
[2025-12-16 15:12:28] Starting ATLAS job with PandaID=6930761597
[2025-12-16 15:12:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 20:39:38]  *** The last 200 lines of the pilot log: ***
[2025-12-16 20:39:38] 2025-12-17 01:38:25,061 | INFO     | monitor loop #1195: job 0:6930761597 is in state 'finished'
[2025-12-16 20:39:38] 2025-12-17 01:38:25,066 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 20:39:38] 2025-12-17 01:38:27,624 | INFO     | monitor loop #1196: job 0:6930761597 is in state 'finished'
[2025-12-16 20:39:38] 2025-12-17 01:38:27,624 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 20:39:38] 2025-12-17 01:38:29,896 | INFO     | PID=3054815 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 20:39:38] 2025-12-17 01:38:29,897 | INFO     | .. there are 17 such processes running
[2025-12-16 20:39:38] 2025-12-17 01:38:30,160 | INFO     | monitor loop #1197: job 0:6930761597 is in state 'finished'
[2025-12-16 20:39:38] 2025-12-17 01:38:30,160 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 20:39:38] 2025-12-17 01:38:30,826 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-16 20:39:38] 2025-12-17 01:38:30,858 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2881.276142857144
[2025-12-16 20:39:38] 2025-12-17 01:38:30,902 | INFO     | time since job start (19474s) is within the limit (174528.0s)
[2025-12-16 20:39:38] 2025-12-17 01:38:30,926 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6930761597/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 20:39:38] 2025-12-17 01:38:30,927 | INFO     | extracted standard info from prmon json
[2025-12-16 20:39:38] 2025-12-17 01:38:30,927 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 20:39:38] 2025-12-17 01:38:30,927 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 20:39:38] 2025-12-17 01:38:30,928 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 20:39:38] 2025-12-17 01:38:30,928 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 20:39:38] 2025-12-17 01:38:30,982 | INFO     | fitting pss+swap vs Time
[2025-12-16 20:39:38] 2025-12-17 01:38:31,049 | INFO     | sum of square deviations: 9784738966.085459
[2025-12-16 20:39:38] 2025-12-17 01:38:31,052 | INFO     | sum of deviations: 11179265730.547398
[2025-12-16 20:39:38] 2025-12-17 01:38:31,075 | INFO     | mean x: 1765925829.0537975
[2025-12-16 20:39:38] 2025-12-17 01:38:31,076 | INFO     | mean y: 2495605.085443038
[2025-12-16 20:39:38] 2025-12-17 01:38:31,076 | INFO     | intersect: -2015111013.9419856
[2025-12-16 20:39:38] 2025-12-17 01:38:31,077 | INFO     | chi2: 4.165377174052144
[2025-12-16 20:39:38] 2025-12-17 01:38:31,077 | INFO     | sum of square deviations: 9327590810.87461
[2025-12-16 20:39:38] 2025-12-17 01:38:31,097 | INFO     | sum of deviations: 33217284958.75883
[2025-12-16 20:39:38] 2025-12-17 01:38:31,097 | INFO     | mean x: 1765925676.5530546
[2025-12-16 20:39:38] 2025-12-17 01:38:31,097 | INFO     | mean y: 2502863.8327974277
[2025-12-16 20:39:38] 2025-12-17 01:38:31,097 | INFO     | intersect: -6286286771.499796
[2025-12-16 20:39:38] 2025-12-17 01:38:31,098 | INFO     | chi2: 3.343659079802291
[2025-12-16 20:39:38] 2025-12-17 01:38:31,098 | INFO     | current chi2=3.343659079802291 (change=19.727339444040606 %)
[2025-12-16 20:39:38] 2025-12-17 01:38:31,098 | INFO     | right removable region: 310
[2025-12-16 20:39:38] 2025-12-17 01:38:31,099 | INFO     | sum of square deviations: 9327542134.527346
[2025-12-16 20:39:38] 2025-12-17 01:38:31,114 | INFO     | sum of deviations: -76780426026.39871
[2025-12-16 20:39:38] 2025-12-17 01:38:31,114 | INFO     | mean x: 1765925981.562701
[2025-12-16 20:39:38] 2025-12-17 01:38:31,114 | INFO     | mean y: 2524888.379421222
[2025-12-16 20:39:38] 2025-12-17 01:38:31,115 | INFO     | intersect: 14538889049.476955
[2025-12-16 20:39:38] 2025-12-17 01:38:31,131 | INFO     | chi2: 1.198017131766571
[2025-12-16 20:39:38] 2025-12-17 01:38:31,132 | INFO     | current chi2=1.198017131766571 (change=71.23868783769414 %)
[2025-12-16 20:39:38] 2025-12-17 01:38:31,132 | INFO     | sum of square deviations: 8884810690.418344
[2025-12-16 20:39:38] 2025-12-17 01:38:31,135 | INFO     | sum of deviations: -94897466169.4379
[2025-12-16 20:39:38] 2025-12-17 01:38:31,165 | INFO     | mean x: 1765926134.0718954
[2025-12-16 20:39:38] 2025-12-17 01:38:31,166 | INFO     | mean y: 2531102.565359477
[2025-12-16 20:39:38] 2025-12-17 01:38:31,166 | INFO     | intersect: 18864150264.191334
[2025-12-16 20:39:38] 2025-12-17 01:38:31,166 | INFO     | chi2: 1.014997203477554
[2025-12-16 20:39:38] 2025-12-17 01:38:31,189 | INFO     | current chi2=1.014997203477554 (change=15.276904097284458 %)
[2025-12-16 20:39:38] 2025-12-17 01:38:31,189 | INFO     | left removable region: 20
[2025-12-16 20:39:38] 2025-12-17 01:38:31,190 | INFO     | sum of square deviations: 7562716868.00348
[2025-12-16 20:39:38] 2025-12-17 01:38:31,210 | INFO     | sum of deviations: -63184064505.14482
[2025-12-16 20:39:38] 2025-12-17 01:38:31,210 | INFO     | mean x: 1765926256.0586207
[2025-12-16 20:39:38] 2025-12-17 01:38:31,210 | INFO     | mean y: 2536079.5379310343
[2025-12-16 20:39:38] 2025-12-17 01:38:31,211 | INFO     | intersect: 14756281383.187374
[2025-12-16 20:39:38] 2025-12-17 01:38:31,211 | INFO     | chi2: 0.14273426670910397
[2025-12-16 20:39:38] 2025-12-17 01:38:31,211 | INFO     | current memory leak: -8.35 B/s (using 290 data points, chi2=0.14)
[2025-12-16 20:39:38] 2025-12-17 01:38:31,212 | INFO     | could have reported an average CPU frequency of 2914 MHz (14 samples)
[2025-12-16 20:39:38] 2025-12-17 01:38:31,213 | INFO     | ..............................
[2025-12-16 20:39:38] 2025-12-17 01:38:31,213 | INFO     | . Timing measurements:
[2025-12-16 20:39:38] 2025-12-17 01:38:31,213 | INFO     | . get job = 1 s
[2025-12-16 20:39:38] 2025-12-17 01:38:31,214 | INFO     | . initial setup = 13 s
[2025-12-16 20:39:38] 2025-12-17 01:38:31,214 | INFO     | . payload setup = 56 s
[2025-12-16 20:39:38] 2025-12-17 01:38:31,214 | INFO     | . stage-in = 0 s
[2025-12-16 20:39:38] 2025-12-17 01:38:31,214 | INFO     | . payload execution = 19283 s
[2025-12-16 20:39:38] 2025-12-17 01:38:31,214 | INFO     | . stage-out = 5 s
[2025-12-16 20:39:38] 2025-12-17 01:38:31,214 | INFO     | . log creation = 0 s
[2025-12-16 20:39:38] 2025-12-17 01:38:31,214 | INFO     | ..............................
[2025-12-16 20:39:38] 2025-12-17 01:38:31,899 | INFO     | 
[2025-12-16 20:39:38] 2025-12-17 01:38:31,912 | INFO     | job summary report
[2025-12-16 20:39:38] 2025-12-17 01:38:31,912 | INFO     | --------------------------------------------------
[2025-12-16 20:39:38] 2025-12-17 01:38:31,912 | INFO     | PanDA job id: 6930761597
[2025-12-16 20:39:38] 2025-12-17 01:38:31,913 | INFO     | task id: 47886831
[2025-12-16 20:39:38] 2025-12-17 01:38:31,913 | INFO     | errors: (none)
[2025-12-16 20:39:38] 2025-12-17 01:38:31,913 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 20:39:38] 2025-12-17 01:38:31,928 | INFO     | pilot state: finished 
[2025-12-16 20:39:38] 2025-12-17 01:38:31,928 | INFO     | transexitcode: 0
[2025-12-16 20:39:38] 2025-12-17 01:38:31,928 | INFO     | exeerrorcode: 0
[2025-12-16 20:39:38] 2025-12-17 01:38:31,928 | INFO     | exeerrordiag: 
[2025-12-16 20:39:38] 2025-12-17 01:38:31,929 | INFO     | exitcode: 0
[2025-12-16 20:39:38] 2025-12-17 01:38:31,929 | INFO     | exitmsg: OK
[2025-12-16 20:39:38] 2025-12-17 01:38:31,929 | INFO     | cpuconsumptiontime: 42655 s
[2025-12-16 20:39:38] 2025-12-17 01:38:31,929 | INFO     | nevents: 400
[2025-12-16 20:39:38] 2025-12-17 01:38:31,929 | INFO     | neventsw: 0
[2025-12-16 20:39:38] 2025-12-17 01:38:31,929 | INFO     | pid: 3066866
[2025-12-16 20:39:38] 2025-12-17 01:38:31,929 | INFO     | pgrp: 3066866
[2025-12-16 20:39:38] 2025-12-17 01:38:31,929 | INFO     | corecount: 8
[2025-12-16 20:39:38] 2025-12-17 01:38:31,929 | INFO     | event service: False
[2025-12-16 20:39:38] 2025-12-17 01:38:31,929 | INFO     | sizes: {0: 2283165, 2: 2283766, 3: 2283850, 4: 2283906, 5: 2283906, 6: 2284105, 7: 2284261, 18: 2284289, 30: 2284317, 41: 2284345, 45: 2284635, 53: 2284943, 19344:
[2025-12-16 20:39:38] 2025-12-17 01:38:31,929 | INFO     | --------------------------------------------------
[2025-12-16 20:39:38] 2025-12-17 01:38:31,929 | INFO     | 
[2025-12-16 20:39:38] 2025-12-17 01:38:31,929 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-16 20:39:38] 2025-12-17 01:38:32,180 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 20:39:38] 2025-12-17 01:38:32,181 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 20:39:38] 2025-12-17 01:38:32,181 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 20:39:38] 2025-12-17 01:38:32,181 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 20:39:38] 2025-12-17 01:38:32,181 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 20:39:38] 2025-12-17 01:38:32,181 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 20:39:38] 2025-12-17 01:38:32,181 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 20:39:38] 2025-12-17 01:38:32,181 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 20:39:38] 2025-12-17 01:38:32,181 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 20:39:38] 2025-12-17 01:38:32,181 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 20:39:38] 2025-12-17 01:38:32,181 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 20:39:38] 2025-12-17 01:38:32,182 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 20:39:38] 2025-12-17 01:38:32,182 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 20:39:38] 2025-12-17 01:38:32,182 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 20:39:38] 2025-12-17 01:38:32,182 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 20:39:38] 2025-12-17 01:38:32,182 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 20:39:38] 2025-12-17 01:38:32,182 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 20:39:38] 2025-12-17 01:38:32,182 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 20:39:38] 2025-12-17 01:38:32,182 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 20:39:38] 2025-12-17 01:38:32,182 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 20:39:38] 2025-12-17 01:38:32,182 | INFO     | job 6930761597 has completed (purged errors)
[2025-12-16 20:39:38] 2025-12-17 01:38:32,182 | INFO     | overall cleanup function is called
[2025-12-16 20:39:38] 2025-12-17 01:38:33,199 | INFO     | --- collectZombieJob: --- 10, [3066866]
[2025-12-16 20:39:38] 2025-12-17 01:38:33,199 | INFO     | zombie collector waiting for pid 3066866
[2025-12-16 20:39:38] 2025-12-17 01:38:33,200 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 20:39:38] 2025-12-17 01:38:33,200 | INFO     | collected zombie processes
[2025-12-16 20:39:38] 2025-12-17 01:38:33,200 | INFO     | will attempt to kill all subprocesses of pid=3066866
[2025-12-16 20:39:38] 2025-12-17 01:38:35,294 | INFO     | process IDs to be killed: [3066866] (in reverse order)
[2025-12-16 20:39:38] 2025-12-17 01:38:35,408 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 20:39:38] 2025-12-17 01:38:35,408 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 20:39:38] 2025-12-17 01:38:35,424 | INFO     | did not find any defunct processes belonging to 3066866
[2025-12-16 20:39:38] 2025-12-17 01:38:35,437 | INFO     | did not find any defunct processes belonging to 3066866
[2025-12-16 20:39:38] 2025-12-17 01:38:35,437 | INFO     | ready for new job
[2025-12-16 20:39:38] 2025-12-17 01:38:35,438 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 20:39:38] 2025-12-17 01:38:35,440 | INFO     | ***************************************
[2025-12-16 20:39:38] 2025-12-17 01:38:35,441 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 20:39:38] 2025-12-17 01:38:35,441 | INFO     | ***************************************
[2025-12-16 20:39:38] 2025-12-17 01:38:35,441 | INFO     | 
[2025-12-16 20:39:38] 2025-12-17 01:38:35,444 | INFO     | architecture information:
[2025-12-16 20:39:38] 2025-12-17 01:38:35,445 | INFO     | executing command: cat /etc/os-release
[2025-12-16 20:39:38] 2025-12-17 01:38:35,555 | INFO     | cat /etc/os-release:
[2025-12-16 20:39:38] NAME="CentOS Linux"
[2025-12-16 20:39:38] VERSION="7 (Core)"
[2025-12-16 20:39:38] ID="centos"
[2025-12-16 20:39:38] ID_LIKE="rhel fedora"
[2025-12-16 20:39:38] VERSION_ID="7"
[2025-12-16 20:39:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 20:39:38] ANSI_COLOR="0;31"
[2025-12-16 20:39:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 20:39:38] HOME_URL="https://www.centos.org/"
[2025-12-16 20:39:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 20:39:38] 
[2025-12-16 20:39:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 20:39:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 20:39:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 20:39:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 20:39:38] 
[2025-12-16 20:39:38] 2025-12-17 01:38:35,556 | INFO     | ***************************************
[2025-12-16 20:39:38] 2025-12-17 01:38:36,059 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-16 20:39:38] 2025-12-17 01:38:36,081 | INFO     | sufficient remaining disk space (75339137024 B)
[2025-12-16 20:39:38] 2025-12-17 01:38:36,081 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 20:39:38] 2025-12-17 01:38:36,081 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 20:39:38] 2025-12-17 01:38:36,081 | INFO     | update_server=False
[2025-12-16 20:39:38] 2025-12-17 01:38:36,081 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 20:39:38] 2025-12-17 01:38:36,239 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 20:39:38] 2025-12-17 01:38:36,240 | INFO     | aborting loop
[2025-12-16 20:39:38] 2025-12-17 01:38:36,402 | INFO     | all payload control threads have been joined
[2025-12-16 20:39:38] 2025-12-17 01:38:36,678 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 20:39:38] 2025-12-17 01:38:37,072 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 20:39:38] 2025-12-17 01:38:37,091 | INFO     | [job] retrieve thread has finished
[2025-12-16 20:39:38] 2025-12-17 01:38:37,108 | INFO     | all data control threads have been joined
[2025-12-16 20:39:38] 2025-12-17 01:38:37,245 | INFO     | [job] job monitor thread has finished
[2025-12-16 20:39:38] 2025-12-17 01:38:37,332 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 20:39:38] 2025-12-17 01:38:37,408 | INFO     | [payload] control thread has finished
[2025-12-16 20:39:38] 2025-12-17 01:38:37,651 | INFO     | [payload] failed_post thread has finished
[2025-12-16 20:39:38] 2025-12-17 01:38:37,672 | INFO     | all job control threads have been joined
[2025-12-16 20:39:38] 2025-12-17 01:38:37,684 | INFO     | [job] queue monitor thread has finished
[2025-12-16 20:39:38] 2025-12-17 01:38:37,784 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 20:39:38] 2025-12-17 01:38:37,815 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 20:39:38] 2025-12-17 01:38:37,915 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 20:39:38] 2025-12-17 01:38:37,920 | INFO     | [data] copytool_in thread has finished
[2025-12-16 20:39:38] 2025-12-17 01:38:38,115 | INFO     | [data] control thread has finished
[2025-12-16 20:39:38] 2025-12-17 01:38:38,222 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 20:39:38] 2025-12-17 01:38:38,309 | INFO     | [job] validate thread has finished
[2025-12-16 20:39:38] 2025-12-17 01:38:38,442 | INFO     | [payload] validate_post thread has finished
[2025-12-16 20:39:38] 2025-12-17 01:38:38,678 | INFO     | [job] control thread has finished
[2025-12-16 20:39:38] 2025-12-17 01:38:39,079 | INFO     | [data] copytool_out thread has finished
[2025-12-16 20:39:38] 2025-12-17 01:38:41,926 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 20:39:38] 2025-12-17 01:39:06,826 | INFO     | PID=3054815 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 20:39:38] 2025-12-17 01:39:06,827 | INFO     | .. there are 17 such processes running
[2025-12-16 20:39:38] 2025-12-17 01:39:06,827 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 20:39:38] 2025-12-17 01:39:06,827 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 20:39:38] 2025-12-17 01:39:06,827 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 20:39:38] 2025-12-17 01:39:30,063 | INFO     | [monitor] cgroup control has ended
[2025-12-16 20:39:38] 2025-12-17 01:39:31,301 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139996387616576)>', '<ExcThread(monitor, started 139995532752640)>']
[2025-12-16 20:39:38] 2025-12-17 01:39:32,015 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 20:39:38] 2025-12-17 01:39:32,015 | INFO     | [monitor] control thread has ended
[2025-12-16 20:39:38] 2025-12-17 01:39:36,327 | INFO     | all workflow threads have been joined
[2025-12-16 20:39:38] 2025-12-17 01:39:36,327 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 20:39:38] 2025-12-17 01:39:36,328 | INFO     | traces error code: 0
[2025-12-16 20:39:38] 2025-12-17 01:39:36,328 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 20:39:38] 2025-12-17 01:39:37,063 [wrapper] ==== pilot stdout END ====
[2025-12-16 20:39:38] 2025-12-17 01:39:37,074 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 20:39:38] 2025-12-17 01:39:37,079 [wrapper] pilotpid: 3054815
[2025-12-16 20:39:38] 2025-12-17 01:39:37,084 [wrapper] Pilot exit status: 0
[2025-12-16 20:39:38] 2025-12-17 01:39:37,116 [wrapper] pandaids: 6930761597
[2025-12-16 20:39:38] 2025-12-17 01:39:37,324 [wrapper] cleanup supervisor_pilot 3908458 3054816
[2025-12-16 20:39:38] 2025-12-17 01:39:37,352 [wrapper] Test setup, not cleaning
[2025-12-16 20:39:38] 2025-12-17 01:39:37,401 [wrapper] apfmon messages muted
[2025-12-16 20:39:38] 2025-12-17 01:39:37,452 [wrapper] ==== wrapper stdout END ====
[2025-12-16 20:39:38] 2025-12-17 01:39:37,516 [wrapper] ==== wrapper stderr END ====
[2025-12-16 20:39:38]  *** Error codes and diagnostics ***
[2025-12-16 20:39:38]     "exeErrorCode": 0,
[2025-12-16 20:39:38]     "exeErrorDiag": "",
[2025-12-16 20:39:38]     "pilotErrorCode": 0,
[2025-12-16 20:39:38]     "pilotErrorDiag": "",
[2025-12-16 20:39:38]  *** Listing of results directory ***
[2025-12-16 20:39:38] total 343960
[2025-12-16 20:39:38] -rw-r--r--. 1 boincer umatlas    579449 Dec 16 01:04 pilot3.tar.gz
[2025-12-16 20:39:38] -rwx------. 1 boincer umatlas     36322 Dec 16 01:08 runpilot2-wrapper.sh
[2025-12-16 20:39:38] -rw-r--r--. 1 boincer umatlas      5112 Dec 16 01:11 queuedata.json
[2025-12-16 20:39:38] -rw-r--r--. 1 boincer umatlas       100 Dec 16 15:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 20:39:38] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 16 15:12 run_atlas
[2025-12-16 20:39:38] -rw-r--r--. 1 boincer umatlas       105 Dec 16 15:12 job.xml
[2025-12-16 20:39:38] -rw-r--r--. 2 boincer umatlas 193723070 Dec 16 15:12 EVNT.47886829._000518.pool.root.1
[2025-12-16 20:39:38] -rw-r--r--. 2 boincer umatlas     15847 Dec 16 15:12 start_atlas.sh
[2025-12-16 20:39:38] drwxrwx--x. 2 boincer umatlas      4096 Dec 16 15:12 shared
[2025-12-16 20:39:38] -rw-r--r--. 2 boincer umatlas    592413 Dec 16 15:12 input.tar.gz
[2025-12-16 20:39:38] -rw-r--r--. 1 boincer umatlas         0 Dec 16 15:12 boinc_lockfile
[2025-12-16 20:39:38] -rw-r--r--. 1 boincer umatlas      2539 Dec 16 15:12 pandaJob.out
[2025-12-16 20:39:38] -rw-------. 1 boincer umatlas        57 Dec 16 15:12 setup.sh.local
[2025-12-16 20:39:38] -rw-------. 1 boincer umatlas    987409 Dec 16 15:13 agis_schedconf.cvmfs.json
[2025-12-16 20:39:38] drwx------. 5 boincer umatlas      4096 Dec 16 15:13 pilot3
[2025-12-16 20:39:38] -rw-------. 1 boincer umatlas 148677511 Dec 16 20:37 HITS.47886831._012604.pool.root.1
[2025-12-16 20:39:38] -rw-r--r--. 1 boincer umatlas       531 Dec 16 20:37 boinc_task_state.xml
[2025-12-16 20:39:38] -rw-------. 1 boincer umatlas      1040 Dec 16 20:37 memory_monitor_summary.json
[2025-12-16 20:39:38] -rw-------. 1 boincer umatlas   1516240 Dec 16 20:37 agis_ddmendpoints.agis.ALL.json
[2025-12-16 20:39:38] -rw-------. 1 boincer umatlas    514773 Dec 16 20:37 log.47886831._012604.job.log.tgz.1
[2025-12-16 20:39:38] -rw-------. 1 boincer umatlas        95 Dec 16 20:38 pilot_heartbeat.json
[2025-12-16 20:39:38] -rw-------. 1 boincer umatlas      7822 Dec 16 20:38 heartbeat.json
[2025-12-16 20:39:38] -rw-r--r--. 1 boincer umatlas      6842 Dec 16 20:39 init_data.xml
[2025-12-16 20:39:38] -rw-------. 1 boincer umatlas      4824 Dec 16 20:39 pilotlog.txt
[2025-12-16 20:39:38] -rw-r--r--. 1 boincer umatlas      8192 Dec 16 20:39 boinc_mmap_file
[2025-12-16 20:39:38] -rw-r--r--. 1 boincer umatlas        28 Dec 16 20:39 wrapper_checkpoint.txt
[2025-12-16 20:39:38] -rw-------. 1 boincer umatlas   2434620 Dec 16 20:39 log.47886831._012604.job.log.1
[2025-12-16 20:39:38] -rw-------. 1 boincer umatlas       357 Dec 16 20:39 output.list
[2025-12-16 20:39:38] -rw-r--r--. 1 boincer umatlas       620 Dec 16 20:39 runtime_log
[2025-12-16 20:39:38] -rw-------. 1 boincer umatlas   2969600 Dec 16 20:39 result.tar.gz
[2025-12-16 20:39:38] -rw-------. 1 boincer umatlas       657 Dec 16 20:39 soGMDmaPdp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLgZKDmAMNJim.diag
[2025-12-16 20:39:38] -rw-r--r--. 1 boincer umatlas      9348 Dec 16 20:39 runtime_log.err
[2025-12-16 20:39:38] -rw-r--r--. 1 boincer umatlas     21531 Dec 16 20:39 stderr.txt
[2025-12-16 20:39:38] HITS file was successfully produced:
[2025-12-16 20:39:38] -rw-------. 1 boincer umatlas 148677511 Dec 16 20:37 shared/HITS.pool.root.1
[2025-12-16 20:39:38]  *** Contents of shared directory: ***
[2025-12-16 20:39:38] total 337880
[2025-12-16 20:39:38] -rw-r--r--. 2 boincer umatlas 193723070 Dec 16 15:12 ATLAS.root_0
[2025-12-16 20:39:38] -rw-r--r--. 2 boincer umatlas     15847 Dec 16 15:12 start_atlas.sh
[2025-12-16 20:39:38] -rw-r--r--. 2 boincer umatlas    592413 Dec 16 15:12 input.tar.gz
[2025-12-16 20:39:38] -rw-------. 1 boincer umatlas 148677511 Dec 16 20:37 HITS.pool.root.1
[2025-12-16 20:39:38] -rw-------. 1 boincer umatlas   2969600 Dec 16 20:39 result.tar.gz
20:39:39 (3050263): run_atlas exited; CPU time 43210.655808
20:39:39 (3050263): called boinc_finish(0)

</stderr_txt>
]]>

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