Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:48:38 (11138): wrapper (7.7.26015): starting
13:48:38 (11138): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 13:48:38] Arguments: --nthreads 8
[2025-12-16 13:48:38] Threads: 8
[2025-12-16 13:48:38] Checking for CVMFS
[2025-12-16 13:48:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 13:48:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 13:48:38] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 13:48:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 13:48:39] 2.11.2.0 2830 83649 106208 154082 2 57 15202503 20275200 1 130560 0 21007601 99.822 5587690 30615 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-16 13:48:39] CVMFS is ok
[2025-12-16 13:48:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 13:48:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 13:48:39] Further information can be found at the LHC@home message board.
[2025-12-16 13:48:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 13:48:39] Checking for apptainer binary...
[2025-12-16 13:48:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 13:48:39] Running /usr/bin/apptainer --version
[2025-12-16 13:48:39] apptainer version 1.3.2-1.el7
[2025-12-16 13:48:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 13:48:40] c-204-14.aglt2.org
[2025-12-16 13:48:40] apptainer works
[2025-12-16 13:48:40] Set ATHENA_PROC_NUMBER=8
[2025-12-16 13:48:40] Set ATHENA_CORE_NUMBER=8
[2025-12-16 13:48:40] Starting ATLAS job with PandaID=6930761630
[2025-12-16 13:48:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
14:47:20 (17330): wrapper (7.7.26015): starting
14:47:20 (17330): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 14:47:20] Arguments: --nthreads 8
[2025-12-16 14:47:20] Threads: 8
[2025-12-16 14:47:20] This job has been restarted, cleaning up previous attempt
[2025-12-16 14:47:20] Checking for CVMFS
[2025-12-16 14:47:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 14:47:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 14:47:21] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 14:47:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 14:47:21] 2.11.2.0 2830 83708 109880 154084 3 3 15274563 20275201 1 130560 0 21074110 99.823 5590439 30619 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-16 14:47:21] CVMFS is ok
[2025-12-16 14:47:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 14:47:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 14:47:21] Further information can be found at the LHC@home message board.
[2025-12-16 14:47:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 14:47:21] Checking for apptainer binary...
[2025-12-16 14:47:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 14:47:21] Running /usr/bin/apptainer --version
[2025-12-16 14:47:21] apptainer version 1.3.2-1.el7
[2025-12-16 14:47:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 14:47:23] c-204-14.aglt2.org
[2025-12-16 14:47:23] apptainer works
[2025-12-16 14:47:23] Set ATHENA_PROC_NUMBER=8
[2025-12-16 14:47:23] Set ATHENA_CORE_NUMBER=8
[2025-12-16 14:47:23] Starting ATLAS job with PandaID=6930761630
[2025-12-16 14:47:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 17:02:22]  *** The last 200 lines of the pilot log: ***
[2025-12-16 17:02:22] 2025-12-16 22:01:49,477 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 17:02:22] 2025-12-16 22:01:49,477 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 17:02:22] 2025-12-16 22:01:49,481 | INFO     | fitting pss+swap vs Time
[2025-12-16 17:02:22] 2025-12-16 22:01:49,482 | INFO     | sum of square deviations: 713140813.0
[2025-12-16 17:02:22] 2025-12-16 22:01:49,482 | INFO     | sum of deviations: -4209284961.5000086
[2025-12-16 17:02:22] 2025-12-16 22:01:49,483 | INFO     | mean x: 1765918489.5
[2025-12-16 17:02:22] 2025-12-16 22:01:49,483 | INFO     | mean y: 2495599.037878788
[2025-12-16 17:02:22] 2025-12-16 22:01:49,483 | INFO     | intersect: 10425758446.409313
[2025-12-16 17:02:22] 2025-12-16 22:01:49,483 | INFO     | chi2: 2.4813647471334006
[2025-12-16 17:02:22] 2025-12-16 22:01:49,484 | INFO     | sum of square deviations: 635130048.0
[2025-12-16 17:02:22] 2025-12-16 22:01:49,484 | INFO     | sum of deviations: 4672676066.999998
[2025-12-16 17:02:22] 2025-12-16 22:01:49,485 | INFO     | mean x: 1765918337.0
[2025-12-16 17:02:22] 2025-12-16 22:01:49,485 | INFO     | mean y: 2512440.7086614175
[2025-12-16 17:02:22] 2025-12-16 22:01:49,485 | INFO     | intersect: -12989416339.169088
[2025-12-16 17:02:22] 2025-12-16 22:01:49,485 | INFO     | chi2: 1.7242017595375436
[2025-12-16 17:02:22] 2025-12-16 22:01:49,485 | INFO     | current chi2=1.7242017595375436 (change=30.51397375055684 %)
[2025-12-16 17:02:22] 2025-12-16 22:01:49,486 | INFO     | sum of square deviations: 563026370.5
[2025-12-16 17:02:22] 2025-12-16 22:01:49,486 | INFO     | sum of deviations: 4683434332.0
[2025-12-16 17:02:22] 2025-12-16 22:01:49,486 | INFO     | mean x: 1765918184.5
[2025-12-16 17:02:22] 2025-12-16 22:01:49,487 | INFO     | mean y: 2512463.426229508
[2025-12-16 17:02:22] 2025-12-16 22:01:49,487 | INFO     | intersect: -14686962641.3467
[2025-12-16 17:02:22] 2025-12-16 22:01:49,487 | INFO     | chi2: 1.7265041828989367
[2025-12-16 17:02:22] 2025-12-16 22:01:49,488 | INFO     | sufficient remaining disk space (18664652800 B)
[2025-12-16 17:02:22] 2025-12-16 22:01:49,488 | INFO     | current chi2=1.7265041828989367 (change=-0.13353561140145362 %)
[2025-12-16 17:02:22] 2025-12-16 22:01:49,488 | INFO     | work directory size check will use 2768240640 B as a max limit (20% grace limit added, divider=1)
[2025-12-16 17:02:22] 2025-12-16 22:01:49,488 | INFO     | right removable region: 121
[2025-12-16 17:02:22] 2025-12-16 22:01:49,489 | INFO     | sum of square deviations: 635130048.0
[2025-12-16 17:02:22] 2025-12-16 22:01:49,489 | INFO     | sum of deviations: -25721702067.0
[2025-12-16 17:02:22] 2025-12-16 22:01:49,490 | INFO     | mean x: 1765918642.0
[2025-12-16 17:02:22] 2025-12-16 22:01:49,490 | INFO     | mean y: 2537003.2362204725
[2025-12-16 17:02:22] 2025-12-16 22:01:49,490 | INFO     | intersect: 71519281215.10074
[2025-12-16 17:02:22] 2025-12-16 22:01:49,490 | INFO     | chi2: 0.9147763723143062
[2025-12-16 17:02:22] 2025-12-16 22:01:49,490 | INFO     | current chi2=0.9147763723143062 (change=63.13414328259871 %)
[2025-12-16 17:02:22] 2025-12-16 22:01:49,491 | INFO     | sum of square deviations: 563026370.5
[2025-12-16 17:02:22] 2025-12-16 22:01:49,491 | INFO     | sum of deviations: -23001824276.5
[2025-12-16 17:02:22] 2025-12-16 22:01:49,491 | INFO     | mean x: 1765918794.5
[2025-12-16 17:02:22] 2025-12-16 22:01:49,492 | INFO     | mean y: 2531158.0573770492
[2025-12-16 17:02:22] 2025-12-16 22:01:49,492 | INFO     | intersect: 72147204881.9282
[2025-12-16 17:02:22] 2025-12-16 22:01:49,492 | INFO     | chi2: 0.9044543534958264
[2025-12-16 17:02:22] 2025-12-16 22:01:49,492 | INFO     | current chi2=0.9044543534958264 (change=1.1283652629074798 %)
[2025-12-16 17:02:22] 2025-12-16 22:01:49,492 | INFO     | left removable region: 20
[2025-12-16 17:02:22] 2025-12-16 22:01:49,493 | INFO     | sum of square deviations: 319447850.0
[2025-12-16 17:02:22] 2025-12-16 22:01:49,493 | INFO     | sum of deviations: -5566503516.0
[2025-12-16 17:02:22] 2025-12-16 22:01:49,493 | INFO     | mean x: 1765918764.0
[2025-12-16 17:02:22] 2025-12-16 22:01:49,493 | INFO     | mean y: 2530502.693069307
[2025-12-16 17:02:22] 2025-12-16 22:01:49,494 | INFO     | intersect: 30774354475.765274
[2025-12-16 17:02:22] 2025-12-16 22:01:49,494 | INFO     | chi2: 0.0665373872555181
[2025-12-16 17:02:22] 2025-12-16 22:01:49,494 | INFO     | current memory leak: -17.43 B/s (using 101 data points, chi2=0.07)
[2025-12-16 17:02:22] 2025-12-16 22:01:49,495 | INFO     | could have reported an average CPU frequency of 1995 MHz (8 samples)
[2025-12-16 17:02:22] 2025-12-16 22:01:49,495 | INFO     | ..............................
[2025-12-16 17:02:22] 2025-12-16 22:01:49,495 | INFO     | . Timing measurements:
[2025-12-16 17:02:22] 2025-12-16 22:01:49,495 | INFO     | . get job = 0 s
[2025-12-16 17:02:22] 2025-12-16 22:01:49,495 | INFO     | . initial setup = 1 s
[2025-12-16 17:02:22] 2025-12-16 22:01:49,496 | INFO     | . payload setup = 8 s
[2025-12-16 17:02:22] 2025-12-16 22:01:49,496 | INFO     | . stage-in = 0 s
[2025-12-16 17:02:22] 2025-12-16 22:01:49,496 | INFO     | . payload execution = 8008 s
[2025-12-16 17:02:22] 2025-12-16 22:01:49,496 | INFO     | . stage-out = 2 s
[2025-12-16 17:02:22] 2025-12-16 22:01:49,496 | INFO     | . log creation = 0 s
[2025-12-16 17:02:22] 2025-12-16 22:01:49,496 | INFO     | ..............................
[2025-12-16 17:02:22] 2025-12-16 22:01:49,594 | INFO     | 
[2025-12-16 17:02:22] 2025-12-16 22:01:49,594 | INFO     | job summary report
[2025-12-16 17:02:22] 2025-12-16 22:01:49,594 | INFO     | --------------------------------------------------
[2025-12-16 17:02:22] 2025-12-16 22:01:49,594 | INFO     | PanDA job id: 6930761630
[2025-12-16 17:02:22] 2025-12-16 22:01:49,595 | INFO     | task id: 47886831
[2025-12-16 17:02:22] 2025-12-16 22:01:49,595 | INFO     | errors: (none)
[2025-12-16 17:02:22] 2025-12-16 22:01:49,595 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 17:02:22] 2025-12-16 22:01:49,595 | INFO     | pilot state: finished 
[2025-12-16 17:02:22] 2025-12-16 22:01:49,595 | INFO     | transexitcode: 0
[2025-12-16 17:02:22] 2025-12-16 22:01:49,595 | INFO     | exeerrorcode: 0
[2025-12-16 17:02:22] 2025-12-16 22:01:49,595 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6930761630: 3898257 B (within 2768240640 B limit)
[2025-12-16 17:02:22] 2025-12-16 22:01:49,596 | INFO     | exeerrordiag: 
[2025-12-16 17:02:22] 2025-12-16 22:01:49,596 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6930761630/HITS.47886831._012637.pool.root.1 does not exist (skip from workdir size calculation)
[2025-12-16 17:02:22] 2025-12-16 22:01:49,596 | INFO     | exitcode: 0
[2025-12-16 17:02:22] 2025-12-16 22:01:49,596 | INFO     | total size of present files: 0 B (workdir size: 3898257 B)
[2025-12-16 17:02:22] 2025-12-16 22:01:49,596 | INFO     | exitmsg: OK
[2025-12-16 17:02:22] 2025-12-16 22:01:49,597 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6930761630/HITS.47886831._012637.pool.root.1 since it does not exist
[2025-12-16 17:02:22] 2025-12-16 22:01:49,597 | INFO     | cpuconsumptiontime: 59107 s
[2025-12-16 17:02:22] 2025-12-16 22:01:49,597 | INFO     | nevents: 400
[2025-12-16 17:02:22] 2025-12-16 22:01:49,597 | INFO     | neventsw: 0
[2025-12-16 17:02:22] 2025-12-16 22:01:49,598 | INFO     | pid: 27924
[2025-12-16 17:02:22] 2025-12-16 22:01:49,598 | INFO     | pgrp: 27924
[2025-12-16 17:02:22] 2025-12-16 22:01:49,598 | INFO     | corecount: 8
[2025-12-16 17:02:22] 2025-12-16 22:01:49,598 | INFO     | event service: False
[2025-12-16 17:02:22] 2025-12-16 22:01:49,598 | INFO     | sizes: {0: 2283822, 1: 2284021, 7: 2284283, 11: 2284311, 8020: 2311990, 8021: 2311989, 8023: 2321227, 8031: 2321365}
[2025-12-16 17:02:22] 2025-12-16 22:01:49,598 | INFO     | --------------------------------------------------
[2025-12-16 17:02:22] 2025-12-16 22:01:49,598 | INFO     | 
[2025-12-16 17:02:22] 2025-12-16 22:01:49,599 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-16 17:02:22] 2025-12-16 22:01:49,625 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 17:02:22] 2025-12-16 22:01:49,625 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 17:02:22] 2025-12-16 22:01:49,625 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 17:02:22] 2025-12-16 22:01:49,626 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 17:02:22] 2025-12-16 22:01:49,626 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 17:02:22] 2025-12-16 22:01:49,626 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 17:02:22] 2025-12-16 22:01:49,626 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 17:02:22] 2025-12-16 22:01:49,627 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 17:02:22] 2025-12-16 22:01:49,627 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 17:02:22] 2025-12-16 22:01:49,627 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 17:02:22] 2025-12-16 22:01:49,627 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 17:02:22] 2025-12-16 22:01:49,627 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 17:02:22] 2025-12-16 22:01:49,628 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 17:02:22] 2025-12-16 22:01:49,628 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 17:02:22] 2025-12-16 22:01:49,628 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 17:02:22] 2025-12-16 22:01:49,628 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 17:02:22] 2025-12-16 22:01:49,628 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 17:02:22] 2025-12-16 22:01:49,628 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 17:02:22] 2025-12-16 22:01:49,629 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 17:02:22] 2025-12-16 22:01:49,629 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 17:02:22] 2025-12-16 22:01:49,629 | INFO     | job 6930761630 has completed (purged errors)
[2025-12-16 17:02:22] 2025-12-16 22:01:49,629 | INFO     | overall cleanup function is called
[2025-12-16 17:02:22] 2025-12-16 22:01:49,699 | INFO     | number of running child processes to parent process 27924: 1
[2025-12-16 17:02:22] 2025-12-16 22:01:49,700 | INFO     | maximum number of monitored processes: 6
[2025-12-16 17:02:22] 2025-12-16 22:01:49,700 | INFO     | aborting job monitoring since job object (job id=6930761630) has expired
[2025-12-16 17:02:22] 2025-12-16 22:01:50,638 | INFO     | --- collectZombieJob: --- 10, [27924]
[2025-12-16 17:02:22] 2025-12-16 22:01:50,639 | INFO     | zombie collector waiting for pid 27924
[2025-12-16 17:02:22] 2025-12-16 22:01:50,639 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 17:02:22] 2025-12-16 22:01:50,639 | INFO     | collected zombie processes
[2025-12-16 17:02:22] 2025-12-16 22:01:50,639 | INFO     | will attempt to kill all subprocesses of pid=27924
[2025-12-16 17:02:22] 2025-12-16 22:01:50,725 | INFO     | process IDs to be killed: [27924] (in reverse order)
[2025-12-16 17:02:22] 2025-12-16 22:01:50,782 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 17:02:22] 2025-12-16 22:01:50,783 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 17:02:22] 2025-12-16 22:01:50,786 | INFO     | did not find any defunct processes belonging to 27924
[2025-12-16 17:02:22] 2025-12-16 22:01:50,789 | INFO     | did not find any defunct processes belonging to 27924
[2025-12-16 17:02:22] 2025-12-16 22:01:50,789 | INFO     | ready for new job
[2025-12-16 17:02:22] 2025-12-16 22:01:50,789 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 17:02:22] 2025-12-16 22:01:50,791 | INFO     | ***************************************
[2025-12-16 17:02:22] 2025-12-16 22:01:50,792 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 17:02:22] 2025-12-16 22:01:50,792 | INFO     | ***************************************
[2025-12-16 17:02:22] 2025-12-16 22:01:50,792 | INFO     | 
[2025-12-16 17:02:22] 2025-12-16 22:01:50,792 | INFO     | architecture information:
[2025-12-16 17:02:22] 2025-12-16 22:01:50,793 | INFO     | executing command: cat /etc/os-release
[2025-12-16 17:02:22] 2025-12-16 22:01:50,810 | INFO     | cat /etc/os-release:
[2025-12-16 17:02:22] NAME="CentOS Linux"
[2025-12-16 17:02:22] VERSION="7 (Core)"
[2025-12-16 17:02:22] ID="centos"
[2025-12-16 17:02:22] ID_LIKE="rhel fedora"
[2025-12-16 17:02:22] VERSION_ID="7"
[2025-12-16 17:02:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 17:02:22] ANSI_COLOR="0;31"
[2025-12-16 17:02:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 17:02:22] HOME_URL="https://www.centos.org/"
[2025-12-16 17:02:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 17:02:22] 
[2025-12-16 17:02:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 17:02:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 17:02:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 17:02:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 17:02:22] 
[2025-12-16 17:02:22] 2025-12-16 22:01:50,811 | INFO     | ***************************************
[2025-12-16 17:02:22] 2025-12-16 22:01:51,315 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-16 17:02:22] 2025-12-16 22:01:51,335 | INFO     | sufficient remaining disk space (18669895680 B)
[2025-12-16 17:02:22] 2025-12-16 22:01:51,336 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 17:02:22] 2025-12-16 22:01:51,336 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 17:02:22] 2025-12-16 22:01:51,337 | INFO     | update_server=False
[2025-12-16 17:02:22] 2025-12-16 22:01:51,337 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 17:02:22] 2025-12-16 22:01:51,338 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 17:02:22] 2025-12-16 22:01:51,338 | INFO     | aborting loop
[2025-12-16 17:02:22] 2025-12-16 22:01:51,338 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 17:02:22] 2025-12-16 22:01:51,775 | INFO     | all payload control threads have been joined
[2025-12-16 17:02:22] 2025-12-16 22:01:52,041 | INFO     | all data control threads have been joined
[2025-12-16 17:02:22] 2025-12-16 22:01:52,342 | INFO     | [job] retrieve thread has finished
[2025-12-16 17:02:22] 2025-12-16 22:01:52,344 | INFO     | [job] job monitor thread has finished
[2025-12-16 17:02:22] 2025-12-16 22:01:52,344 | INFO     | [job] queue monitor thread has finished
[2025-12-16 17:02:22] 2025-12-16 22:01:52,426 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 17:02:22] 2025-12-16 22:01:52,554 | INFO     | all job control threads have been joined
[2025-12-16 17:02:22] 2025-12-16 22:01:52,647 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 17:02:22] 2025-12-16 22:01:52,665 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 17:02:22] 2025-12-16 22:01:52,732 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 17:02:22] 2025-12-16 22:01:52,781 | INFO     | [payload] control thread has finished
[2025-12-16 17:02:22] 2025-12-16 22:01:53,047 | INFO     | [data] control thread has finished
[2025-12-16 17:02:22] 2025-12-16 22:01:53,315 | INFO     | [payload] validate_post thread has finished
[2025-12-16 17:02:22] 2025-12-16 22:01:53,474 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 17:02:22] 2025-12-16 22:01:53,474 | INFO     | [payload] failed_post thread has finished
[2025-12-16 17:02:22] 2025-12-16 22:01:53,486 | INFO     | [job] validate thread has finished
[2025-12-16 17:02:22] 2025-12-16 22:01:53,560 | INFO     | [job] control thread has finished
[2025-12-16 17:02:22] 2025-12-16 22:01:53,732 | INFO     | [data] copytool_in thread has finished
[2025-12-16 17:02:22] 2025-12-16 22:01:53,757 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 17:02:22] 2025-12-16 22:01:54,090 | INFO     | [monitor] cgroup control has ended
[2025-12-16 17:02:22] 2025-12-16 22:01:54,653 | INFO     | [data] copytool_out thread has finished
[2025-12-16 17:02:22] 2025-12-16 22:01:56,739 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 17:02:22] 2025-12-16 22:01:58,151 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139853853218624)>', '<ExcThread(monitor, started 139852976740096)>']
[2025-12-16 17:02:22] 2025-12-16 22:02:03,153 | INFO     | all workflow threads have been joined
[2025-12-16 17:02:22] 2025-12-16 22:02:03,154 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 17:02:22] 2025-12-16 22:02:03,155 | INFO     | traces error code: 0
[2025-12-16 17:02:22] 2025-12-16 22:02:03,156 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 17:02:22] 2025-12-16 22:02:22,200 | INFO     | PID=21489 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 17:02:22] 2025-12-16 22:02:22,201 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 17:02:22] 2025-12-16 22:02:22,201 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 17:02:22] 2025-12-16 22:02:22,201 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 17:02:22] 2025-12-16 22:02:22,201 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 17:02:22] 2025-12-16 22:02:22,201 | INFO     | [monitor] control thread has ended
[2025-12-16 17:02:22] 2025-12-16 22:02:22,332 [wrapper] ==== pilot stdout END ====
[2025-12-16 17:02:22] 2025-12-16 22:02:22,337 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 17:02:22] 2025-12-16 22:02:22,342 [wrapper] pilotpid: 21489
[2025-12-16 17:02:22] 2025-12-16 22:02:22,348 [wrapper] Pilot exit status: 0
[2025-12-16 17:02:22] 2025-12-16 22:02:22,367 [wrapper] pandaids: 6930761630 6930761630
[2025-12-16 17:02:22] 2025-12-16 22:02:22,416 [wrapper] cleanup supervisor_pilot 16827 21490
[2025-12-16 17:02:22] 2025-12-16 22:02:22,421 [wrapper] Test setup, not cleaning
[2025-12-16 17:02:22] 2025-12-16 22:02:22,426 [wrapper] apfmon messages muted
[2025-12-16 17:02:22] 2025-12-16 22:02:22,431 [wrapper] ==== wrapper stdout END ====
[2025-12-16 17:02:22] 2025-12-16 22:02:22,436 [wrapper] ==== wrapper stderr END ====
[2025-12-16 17:02:22]  *** Error codes and diagnostics ***
[2025-12-16 17:02:22]     "exeErrorCode": 0,
[2025-12-16 17:02:22]     "exeErrorDiag": "",
[2025-12-16 17:02:22]     "pilotErrorCode": 0,
[2025-12-16 17:02:22]     "pilotErrorDiag": "",
[2025-12-16 17:02:22]  *** Listing of results directory ***
[2025-12-16 17:02:22] total 535468
[2025-12-16 17:02:22] drwx------ 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2025-12-16 17:02:22] -rw-r--r-- 1 boincer umatlas    579449 Dec 16 01:04 pilot3.tar.gz
[2025-12-16 17:02:22] -rwx------ 1 boincer umatlas     36322 Dec 16 01:08 runpilot2-wrapper.sh
[2025-12-16 17:02:22] -rw-r--r-- 1 boincer umatlas      5112 Dec 16 01:11 queuedata.json
[2025-12-16 17:02:22] -rw-r--r-- 1 boincer umatlas       100 Dec 16 13:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 17:02:22] -rwxr-xr-x 1 boincer umatlas      7986 Dec 16 13:48 run_atlas
[2025-12-16 17:02:22] -rw-r--r-- 1 boincer umatlas       105 Dec 16 13:48 job.xml
[2025-12-16 17:02:22] -rw-r--r-- 3 boincer umatlas 193844852 Dec 16 13:48 EVNT.47886829._000519.pool.root.1
[2025-12-16 17:02:22] -rw-r--r-- 3 boincer umatlas 193844852 Dec 16 13:48 ATLAS.root_0
[2025-12-16 17:02:22] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 13:48 start_atlas.sh
[2025-12-16 17:02:22] drwxrwx--x 2 boincer umatlas      4096 Dec 16 13:48 shared
[2025-12-16 17:02:22] -rw-r--r-- 2 boincer umatlas    592416 Dec 16 13:48 input.tar.gz
[2025-12-16 17:02:22] -rw-r--r-- 1 boincer umatlas         0 Dec 16 13:48 boinc_lockfile
[2025-12-16 17:02:22] -rw-r--r-- 1 boincer umatlas      2539 Dec 16 14:47 pandaJob.out
[2025-12-16 17:02:22] -rw------- 1 boincer umatlas        57 Dec 16 14:47 setup.sh.local
[2025-12-16 17:02:22] -rw------- 1 boincer umatlas    987409 Dec 16 14:47 agis_schedconf.cvmfs.json
[2025-12-16 17:02:22] -rw-r--r-- 1 boincer umatlas      5911 Dec 16 17:00 init_data.xml
[2025-12-16 17:02:22] -rw------- 1 boincer umatlas 153698921 Dec 16 17:01 HITS.47886831._012637.pool.root.1
[2025-12-16 17:02:22] -rw-r--r-- 1 boincer umatlas       531 Dec 16 17:01 boinc_task_state.xml
[2025-12-16 17:02:22] -rw------- 1 boincer umatlas      1049 Dec 16 17:01 memory_monitor_summary.json
[2025-12-16 17:02:22] -rw------- 1 boincer umatlas        96 Dec 16 17:01 pilot_heartbeat.json
[2025-12-16 17:02:22] -rw------- 1 boincer umatlas   1516240 Dec 16 17:01 agis_ddmendpoints.agis.ALL.json
[2025-12-16 17:02:22] -rw------- 1 boincer umatlas    382951 Dec 16 17:01 log.47886831._012637.job.log.tgz.1
[2025-12-16 17:02:22] -rw------- 1 boincer umatlas      7849 Dec 16 17:01 heartbeat.json
[2025-12-16 17:02:22] -rw-r--r-- 1 boincer umatlas      8192 Dec 16 17:02 boinc_mmap_file
[2025-12-16 17:02:22] -rw-r--r-- 1 boincer umatlas        28 Dec 16 17:02 wrapper_checkpoint.txt
[2025-12-16 17:02:22] -rw------- 1 boincer umatlas       745 Dec 16 17:02 pilotlog.txt
[2025-12-16 17:02:22] -rw------- 1 boincer umatlas   1127140 Dec 16 17:02 log.47886831._012637.job.log.1
[2025-12-16 17:02:22] -rw------- 1 boincer umatlas       357 Dec 16 17:02 output.list
[2025-12-16 17:02:22] -rw-r--r-- 1 boincer umatlas       620 Dec 16 17:02 runtime_log
[2025-12-16 17:02:22] -rw------- 1 boincer umatlas   1525760 Dec 16 17:02 result.tar.gz
[2025-12-16 17:02:22] -rw-r--r-- 1 boincer umatlas      9427 Dec 16 17:02 runtime_log.err
[2025-12-16 17:02:22] -rw------- 1 boincer umatlas       785 Dec 16 17:02 bI9MDmaPdp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrgZKDmSetMIo.diag
[2025-12-16 17:02:22] -rw-r--r-- 1 boincer umatlas     23473 Dec 16 17:02 stderr.txt
[2025-12-16 17:02:22] HITS file was successfully produced:
[2025-12-16 17:02:22] -rw------- 1 boincer umatlas 153698921 Dec 16 17:01 shared/HITS.pool.root.1
[2025-12-16 17:02:22]  *** Contents of shared directory: ***
[2025-12-16 17:02:22] total 341492
[2025-12-16 17:02:22] -rw-r--r-- 3 boincer umatlas 193844852 Dec 16 13:48 ATLAS.root_0
[2025-12-16 17:02:22] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 13:48 start_atlas.sh
[2025-12-16 17:02:22] -rw-r--r-- 2 boincer umatlas    592416 Dec 16 13:48 input.tar.gz
[2025-12-16 17:02:22] -rw------- 1 boincer umatlas 153698921 Dec 16 17:01 HITS.pool.root.1
[2025-12-16 17:02:22] -rw------- 1 boincer umatlas   1525760 Dec 16 17:02 result.tar.gz
17:02:23 (17330): run_atlas exited; CPU time 59074.246429
17:02:23 (17330): called boinc_finish(0)

</stderr_txt>
]]>

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