Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:14:27 (839476): wrapper (7.7.26015): starting
12:14:27 (839476): wrapper: running run_atlas (--nthreads 3)
[2025-12-17 12:14:27] Arguments: --nthreads 3
[2025-12-17 12:14:27] Threads: 3
[2025-12-17 12:14:27] Checking for CVMFS
[2025-12-17 12:14:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 12:14:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 12:14:27] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 12:14:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 12:14:27] 2.9.2.0 3520241 5677 84472 154110 3 56 13816364 36864001 0 130560 0 3996840 99.990 208253 18827 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-17 12:14:27] CVMFS is ok
[2025-12-17 12:14:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 12:14:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 12:14:27] Further information can be found at the LHC@home message board.
[2025-12-17 12:14:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 12:14:27] Checking for apptainer binary...
[2025-12-17 12:14:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 12:14:27] Running /usr/bin/apptainer --version
[2025-12-17 12:14:27] apptainer version 1.4.1-1.1
[2025-12-17 12:14:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 12:14:27] thA373
[2025-12-17 12:14:27] apptainer works
[2025-12-17 12:14:27] Set ATHENA_PROC_NUMBER=3
[2025-12-17 12:14:27] Set ATHENA_CORE_NUMBER=3
[2025-12-17 12:14:27] Starting ATLAS job with PandaID=6930226623
[2025-12-17 12:14:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 13:38:59]  *** The last 200 lines of the pilot log: ***
[2025-12-17 13:38:59] 2025-12-17 12:38:28,415 | INFO     | will attempt to kill all subprocesses of pid=849642
[2025-12-17 13:38:59] 2025-12-17 12:38:28,458 | INFO     | process IDs to be killed: [849642] (in reverse order)
[2025-12-17 13:38:59] 2025-12-17 12:38:28,481 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 13:38:59] 2025-12-17 12:38:28,482 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 13:38:59] 2025-12-17 12:38:28,483 | INFO     | did not find any defunct processes belonging to 849642
[2025-12-17 13:38:59] 2025-12-17 12:38:28,484 | INFO     | did not find any defunct processes belonging to 849642
[2025-12-17 13:38:59] 2025-12-17 12:38:28,484 | INFO     | ready for new job
[2025-12-17 13:38:59] 2025-12-17 12:38:28,484 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 13:38:59] 2025-12-17 12:38:28,485 | INFO     | ***************************************
[2025-12-17 13:38:59] 2025-12-17 12:38:28,485 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 13:38:59] 2025-12-17 12:38:28,485 | INFO     | ***************************************
[2025-12-17 13:38:59] 2025-12-17 12:38:28,485 | INFO     | 
[2025-12-17 13:38:59] 2025-12-17 12:38:28,486 | INFO     | architecture information:
[2025-12-17 13:38:59] 2025-12-17 12:38:28,486 | INFO     | executing command: cat /etc/os-release
[2025-12-17 13:38:59] 2025-12-17 12:38:28,494 | INFO     | cat /etc/os-release:
[2025-12-17 13:38:59] NAME="CentOS Linux"
[2025-12-17 13:38:59] VERSION="7 (Core)"
[2025-12-17 13:38:59] ID="centos"
[2025-12-17 13:38:59] ID_LIKE="rhel fedora"
[2025-12-17 13:38:59] VERSION_ID="7"
[2025-12-17 13:38:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 13:38:59] ANSI_COLOR="0;31"
[2025-12-17 13:38:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 13:38:59] HOME_URL="https://www.centos.org/"
[2025-12-17 13:38:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 13:38:59] 
[2025-12-17 13:38:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 13:38:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 13:38:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 13:38:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 13:38:59] 
[2025-12-17 13:38:59] 2025-12-17 12:38:28,494 | INFO     | ***************************************
[2025-12-17 13:38:59] 2025-12-17 12:38:28,997 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-17 13:38:59] 2025-12-17 12:38:29,010 | INFO     | sufficient remaining disk space (245555527680 B)
[2025-12-17 13:38:59] 2025-12-17 12:38:29,010 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 13:38:59] 2025-12-17 12:38:29,010 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 13:38:59] 2025-12-17 12:38:29,010 | INFO     | update_server=False
[2025-12-17 13:38:59] 2025-12-17 12:38:29,010 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 13:38:59] 2025-12-17 12:38:29,010 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 13:38:59] 2025-12-17 12:38:29,010 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 13:38:59] 2025-12-17 12:38:29,375 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-17 13:38:59] 2025-12-17 12:38:29,375 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-17 13:38:59] 2025-12-17 12:38:29,375 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 13:38:59] 2025-12-17 12:38:29,375 | INFO     | will abort loop
[2025-12-17 13:38:59] 2025-12-17 12:38:29,420 | INFO     | all payload control threads have been joined
[2025-12-17 13:38:59] 2025-12-17 12:38:29,520 | INFO     | all job control threads have been joined
[2025-12-17 13:38:59] 2025-12-17 12:38:29,958 | INFO     | all data control threads have been joined
[2025-12-17 13:38:59] 2025-12-17 12:38:30,016 | INFO     | [job] retrieve thread has finished
[2025-12-17 13:38:59] 2025-12-17 12:38:30,016 | INFO     | [job] queue monitor thread has finished
[2025-12-17 13:38:59] 2025-12-17 12:38:30,315 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 13:38:59] 2025-12-17 12:38:30,381 | INFO     | [job] job monitor thread has finished
[2025-12-17 13:38:59] 2025-12-17 12:38:30,426 | INFO     | [payload] control thread has finished
[2025-12-17 13:38:59] 2025-12-17 12:38:30,526 | INFO     | [job] control thread has finished
[2025-12-17 13:38:59] 2025-12-17 12:38:30,872 | INFO     | [data] copytool_in thread has finished
[2025-12-17 13:38:59] 2025-12-17 12:38:30,964 | INFO     | [data] control thread has finished
[2025-12-17 13:38:59] 2025-12-17 12:38:31,016 | INFO     | [data] copytool_out thread has finished
[2025-12-17 13:38:59] 2025-12-17 12:38:31,040 | INFO     | [payload] failed_post thread has finished
[2025-12-17 13:38:59] 2025-12-17 12:38:31,320 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 13:38:59] 2025-12-17 12:38:31,330 | INFO     | [job] validate thread has finished
[2025-12-17 13:38:59] 2025-12-17 12:38:31,378 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 13:38:59] 2025-12-17 12:38:31,406 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 13:38:59] 2025-12-17 12:38:31,563 | INFO     | [payload] validate_post thread has finished
[2025-12-17 13:38:59] 2025-12-17 12:38:35,327 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 13:38:59] 2025-12-17 12:38:38,793 | INFO     | [monitor] cgroup control has ended
[2025-12-17 13:38:59] 2025-12-17 12:38:39,750 | INFO     | job.realtimelogging is not enabled
[2025-12-17 13:38:59] 2025-12-17 12:38:40,756 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 13:38:59] 2025-12-17 12:38:40,916 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140466234107712)>', '<ExcThread(monitor, started 140465747777280)>']
[2025-12-17 13:38:59] 2025-12-17 12:38:45,939 | INFO     | all workflow threads have been joined
[2025-12-17 13:38:59] 2025-12-17 12:38:45,939 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 13:38:59] 2025-12-17 12:38:45,939 | INFO     | traces error code: 0
[2025-12-17 13:38:59] 2025-12-17 12:38:45,939 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 13:38:59] 2025-12-17 12:38:59,488 | INFO     | PID=843197 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-17 13:38:59] 2025-12-17 12:38:59,488 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 13:38:59] 2025-12-17 12:38:59,488 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 13:38:59] 2025-12-17 12:38:59,488 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 13:38:59] 2025-12-17 12:38:59,488 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 13:38:59] 2025-12-17 12:38:59,488 | INFO     | [monitor] control thread has ended
[2025-12-17 13:38:59] 2025-12-17 12:38:59,534 [wrapper] ==== pilot stdout END ====
[2025-12-17 13:38:59] 2025-12-17 12:38:59,536 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 13:38:59] 2025-12-17 12:38:59,538 [wrapper] pilotpid: 843197
[2025-12-17 13:38:59] 2025-12-17 12:38:59,541 [wrapper] Pilot exit status: 0
[2025-12-17 13:38:59] 2025-12-17 12:38:59,548 [wrapper] pandaids: 6930226623
[2025-12-17 13:38:59] 2025-12-17 12:38:59,564 [wrapper] cleanup supervisor_pilot  861398 843198
[2025-12-17 13:38:59] 2025-12-17 12:38:59,566 [wrapper] Test setup, not cleaning
[2025-12-17 13:38:59] 2025-12-17 12:38:59,568 [wrapper] apfmon messages muted
[2025-12-17 13:38:59] 2025-12-17 12:38:59,570 [wrapper] ==== wrapper stdout END ====
[2025-12-17 13:38:59] 2025-12-17 12:38:59,573 [wrapper] ==== wrapper stderr END ====
[2025-12-17 13:38:59]  *** Error codes and diagnostics ***
[2025-12-17 13:38:59]     "exeErrorCode": 0,
[2025-12-17 13:38:59]     "exeErrorDiag": "",
[2025-12-17 13:38:59]     "pilotErrorCode": 0,
[2025-12-17 13:38:59]     "pilotErrorDiag": "",
[2025-12-17 13:38:59]  *** Listing of results directory ***
[2025-12-17 13:38:59] total 334928
[2025-12-17 13:38:59] -rw-r--r-- 1 boinc boinc    579449 Dec 16 00:23 pilot3.tar.gz
[2025-12-17 13:38:59] -rwx------ 1 boinc boinc     36322 Dec 16 00:27 runpilot2-wrapper.sh
[2025-12-17 13:38:59] -rw-r--r-- 1 boinc boinc      5112 Dec 16 00:28 queuedata.json
[2025-12-17 13:38:59] -rw-r--r-- 1 boinc boinc       100 Dec 17 12:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 13:38:59] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 12:14 run_atlas
[2025-12-17 13:38:59] -rw-r--r-- 1 boinc boinc       105 Dec 17 12:14 job.xml
[2025-12-17 13:38:59] -rw-r--r-- 2 boinc boinc 190221381 Dec 17 12:14 EVNT.47886829._000432.pool.root.1
[2025-12-17 13:38:59] -rw-r--r-- 2 boinc boinc    592414 Dec 17 12:14 input.tar.gz
[2025-12-17 13:38:59] -rw-r--r-- 2 boinc boinc     15847 Dec 17 12:14 start_atlas.sh
[2025-12-17 13:38:59] drwxrwx--x 2 boinc boinc      4096 Dec 17 12:14 shared
[2025-12-17 13:38:59] -rw-r--r-- 1 boinc boinc         0 Dec 17 12:14 boinc_setup_complete
[2025-12-17 13:38:59] -rw-r--r-- 1 boinc boinc      6439 Dec 17 12:14 init_data.xml
[2025-12-17 13:38:59] -rw-r--r-- 1 boinc boinc         0 Dec 17 12:14 boinc_lockfile
[2025-12-17 13:38:59] -rw-r--r-- 1 boinc boinc      2540 Dec 17 12:14 pandaJob.out
[2025-12-17 13:38:59] -rw------- 1 boinc boinc    987423 Dec 17 12:14 agis_schedconf.cvmfs.json
[2025-12-17 13:38:59] -rw------- 1 boinc boinc   1516240 Dec 17 12:14 agis_ddmendpoints.agis.ALL.json
[2025-12-17 13:38:59] drwx------ 5 boinc boinc      4096 Dec 17 12:14 pilot3
[2025-12-17 13:38:59] -rw------- 1 boinc boinc 146851578 Dec 17 13:38 HITS.47886831._010443.pool.root.1
[2025-12-17 13:38:59] -rw-r--r-- 1 boinc boinc       529 Dec 17 13:38 boinc_task_state.xml
[2025-12-17 13:38:59] -rw------- 1 boinc boinc      1023 Dec 17 13:38 memory_monitor_summary.json
[2025-12-17 13:38:59] -rw------- 1 boinc boinc    259369 Dec 17 13:38 log.47886831._010443.job.log.tgz.1
[2025-12-17 13:38:59] -rw------- 1 boinc boinc      7756 Dec 17 13:38 heartbeat.json
[2025-12-17 13:38:59] -rw-r--r-- 1 boinc boinc      8192 Dec 17 13:38 boinc_mmap_file
[2025-12-17 13:38:59] -rw-r--r-- 1 boinc boinc        27 Dec 17 13:38 wrapper_checkpoint.txt
[2025-12-17 13:38:59] -rw------- 1 boinc boinc       746 Dec 17 13:38 pilotlog.txt
[2025-12-17 13:38:59] -rw------- 1 boinc boinc        95 Dec 17 13:38 pilot_heartbeat.json
[2025-12-17 13:38:59] -rw------- 1 boinc boinc    737351 Dec 17 13:38 log.47886831._010443.job.log.1
[2025-12-17 13:38:59] -rw------- 1 boinc boinc       357 Dec 17 13:38 output.list
[2025-12-17 13:38:59] -rw-r--r-- 1 boinc boinc       620 Dec 17 13:38 runtime_log
[2025-12-17 13:38:59] -rw------- 1 boinc boinc   1013760 Dec 17 13:38 result.tar.gz
[2025-12-17 13:38:59] -rw-r--r-- 1 boinc boinc      8897 Dec 17 13:38 runtime_log.err
[2025-12-17 13:38:59] -rw------- 1 boinc boinc       658 Dec 17 13:38 8s1MDmG9Wp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmUYUKDm5lfeCo.diag
[2025-12-17 13:38:59] -rw-r--r-- 1 boinc boinc     10513 Dec 17 13:38 stderr.txt
[2025-12-17 13:38:59] HITS file was successfully produced:
[2025-12-17 13:38:59] -rw------- 1 boinc boinc 146851578 Dec 17 13:38 shared/HITS.pool.root.1
[2025-12-17 13:38:59]  *** Contents of shared directory: ***
[2025-12-17 13:38:59] total 330772
[2025-12-17 13:38:59] -rw-r--r-- 2 boinc boinc 190221381 Dec 17 12:14 ATLAS.root_0
[2025-12-17 13:38:59] -rw-r--r-- 2 boinc boinc    592414 Dec 17 12:14 input.tar.gz
[2025-12-17 13:38:59] -rw-r--r-- 2 boinc boinc     15847 Dec 17 12:14 start_atlas.sh
[2025-12-17 13:38:59] -rw------- 1 boinc boinc 146851578 Dec 17 13:38 HITS.pool.root.1
[2025-12-17 13:38:59] -rw------- 1 boinc boinc   1013760 Dec 17 13:38 result.tar.gz
13:39:01 (839476): run_atlas exited; CPU time 14436.114131
13:39:01 (839476): called boinc_finish(0)

</stderr_txt>
]]>

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