Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:49:18 (2519457): wrapper (7.7.26015): starting
10:49:18 (2519457): wrapper: running run_atlas (--nthreads 4)
[2025-12-17 10:49:18] Arguments: --nthreads 4
[2025-12-17 10:49:18] Threads: 4
[2025-12-17 10:49:18] Checking for CVMFS
[2025-12-17 10:49:18] No cvmfs_config command found, will try listing directly
[2025-12-17 10:49:18] CVMFS is ok
[2025-12-17 10:49:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 10:49:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 10:49:18] Further information can be found at the LHC@home message board.
[2025-12-17 10:49:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 10:49:18] Checking for apptainer binary...
[2025-12-17 10:49:18] which: no apptainer in ((null))
[2025-12-17 10:49:18] apptainer is not installed, using version from CVMFS
[2025-12-17 10:49:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 10:49:18] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2025-12-17 10:49:18] apptainer works
[2025-12-17 10:49:18] Set ATHENA_PROC_NUMBER=4
[2025-12-17 10:49:18] Set ATHENA_CORE_NUMBER=4
[2025-12-17 10:49:18] Starting ATLAS job with PandaID=6930761506
[2025-12-17 10:49:18] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 14:09:51]  *** The last 200 lines of the pilot log: ***
[2025-12-17 14:09:51] 2025-12-17 12:58:17,615 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-17 14:09:51] 2025-12-17 12:58:17,625 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2636.1679531250006
[2025-12-17 14:09:51] 2025-12-17 12:58:17,638 | INFO     | using path: /scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6930761506/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 14:09:51] 2025-12-17 12:58:17,639 | INFO     | extracted standard info from prmon json
[2025-12-17 14:09:51] 2025-12-17 12:58:17,639 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 14:09:51] 2025-12-17 12:58:17,639 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 14:09:51] 2025-12-17 12:58:17,640 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 14:09:51] 2025-12-17 12:58:17,640 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 14:09:51] 2025-12-17 12:58:17,644 | INFO     | fitting pss+swap vs Time
[2025-12-17 14:09:51] 2025-12-17 12:58:17,645 | INFO     | sum of square deviations: 1995283922.5
[2025-12-17 14:09:51] 2025-12-17 12:58:17,646 | INFO     | sum of deviations: 1681611033.9999924
[2025-12-17 14:09:51] 2025-12-17 12:58:17,646 | INFO     | mean x: 1765970641.5
[2025-12-17 14:09:51] 2025-12-17 12:58:17,646 | INFO     | mean y: 2306840.6666666665
[2025-12-17 14:09:51] 2025-12-17 12:58:17,646 | INFO     | intersect: -1486040598.5015776
[2025-12-17 14:09:51] 2025-12-17 12:58:17,647 | INFO     | chi2: 1.8971568309691924
[2025-12-17 14:09:51] 2025-12-17 12:58:17,647 | INFO     | sum of square deviations: 1838657730.0
[2025-12-17 14:09:51] 2025-12-17 12:58:17,648 | INFO     | sum of deviations: 12081611749.000002
[2025-12-17 14:09:51] 2025-12-17 12:58:17,648 | INFO     | mean x: 1765970489.0
[2025-12-17 14:09:51] 2025-12-17 12:58:17,648 | INFO     | mean y: 2316741.4309392264
[2025-12-17 14:09:51] 2025-12-17 12:58:17,648 | INFO     | intersect: -11601675377.477282
[2025-12-17 14:09:51] 2025-12-17 12:58:17,649 | INFO     | chi2: 1.230995618442898
[2025-12-17 14:09:51] 2025-12-17 12:58:17,649 | INFO     | current chi2=1.230995618442898 (change=35.11366069751732 %)
[2025-12-17 14:09:51] 2025-12-17 12:58:17,649 | INFO     | sum of square deviations: 1690450300.0
[2025-12-17 14:09:51] 2025-12-17 12:58:17,650 | INFO     | sum of deviations: 11677800685.5
[2025-12-17 14:09:51] 2025-12-17 12:58:17,650 | INFO     | mean x: 1765970336.5
[2025-12-17 14:09:51] 2025-12-17 12:58:17,650 | INFO     | mean y: 2316325.789772727
[2025-12-17 14:09:51] 2025-12-17 12:58:17,650 | INFO     | intersect: -12197184367.10393
[2025-12-17 14:09:51] 2025-12-17 12:58:17,651 | INFO     | chi2: 1.2318002831252062
[2025-12-17 14:09:51] 2025-12-17 12:58:17,651 | INFO     | current chi2=1.2318002831252062 (change=-0.065366981835885 %)
[2025-12-17 14:09:51] 2025-12-17 12:58:17,651 | INFO     | right removable region: 175
[2025-12-17 14:09:51] 2025-12-17 12:58:17,651 | INFO     | sum of square deviations: 1838657730.0
[2025-12-17 14:09:51] 2025-12-17 12:58:17,652 | INFO     | sum of deviations: -19818087724.0
[2025-12-17 14:09:51] 2025-12-17 12:58:17,652 | INFO     | mean x: 1765970794.0
[2025-12-17 14:09:51] 2025-12-17 12:58:17,652 | INFO     | mean y: 2327483.6629834254
[2025-12-17 14:09:51] 2025-12-17 12:58:17,652 | INFO     | intersect: 19036954506.667385
[2025-12-17 14:09:51] 2025-12-17 12:58:17,653 | INFO     | chi2: 0.714178867784246
[2025-12-17 14:09:51] 2025-12-17 12:58:17,653 | INFO     | current chi2=0.714178867784246 (change=62.35530683989913 %)
[2025-12-17 14:09:51] 2025-12-17 12:58:17,653 | INFO     | sum of square deviations: 1690450300.0
[2025-12-17 14:09:51] 2025-12-17 12:58:17,654 | INFO     | sum of deviations: -17383268362.5
[2025-12-17 14:09:51] 2025-12-17 12:58:17,654 | INFO     | mean x: 1765970946.5
[2025-12-17 14:09:51] 2025-12-17 12:58:17,654 | INFO     | mean y: 2324969.221590909
[2025-12-17 14:09:51] 2025-12-17 12:58:17,654 | INFO     | intersect: 18162188576.798595
[2025-12-17 14:09:51] 2025-12-17 12:58:17,655 | INFO     | chi2: 0.7118573950129652
[2025-12-17 14:09:51] 2025-12-17 12:58:17,655 | INFO     | current chi2=0.7118573950129652 (change=0.3250548113364406 %)
[2025-12-17 14:09:51] 2025-12-17 12:58:17,655 | INFO     | left removable region: 20
[2025-12-17 14:09:51] 2025-12-17 12:58:17,655 | INFO     | sum of square deviations: 1154663510.0
[2025-12-17 14:09:51] 2025-12-17 12:58:17,656 | INFO     | sum of deviations: -1283611105.0
[2025-12-17 14:09:51] 2025-12-17 12:58:17,656 | INFO     | mean x: 1765970916.0
[2025-12-17 14:09:51] 2025-12-17 12:58:17,656 | INFO     | mean y: 2328931.0516129034
[2025-12-17 14:09:51] 2025-12-17 12:58:17,657 | INFO     | intersect: 1965515486.4876828
[2025-12-17 14:09:51] 2025-12-17 12:58:17,657 | INFO     | chi2: 0.01010374243987739
[2025-12-17 14:09:51] 2025-12-17 12:58:17,657 | INFO     | current memory leak: -1.11 B/s (using 155 data points, chi2=0.01)
[2025-12-17 14:09:51] 2025-12-17 12:58:17,658 | INFO     | could have reported an average CPU frequency of 2621 MHz (10 samples)
[2025-12-17 14:09:51] 2025-12-17 12:58:17,658 | INFO     | ..............................
[2025-12-17 14:09:51] 2025-12-17 12:58:17,658 | INFO     | . Timing measurements:
[2025-12-17 14:09:51] 2025-12-17 12:58:17,658 | INFO     | . get job = 0 s
[2025-12-17 14:09:51] 2025-12-17 12:58:17,658 | INFO     | . initial setup = 1 s
[2025-12-17 14:09:51] 2025-12-17 12:58:17,658 | INFO     | . payload setup = 6 s
[2025-12-17 14:09:51] 2025-12-17 12:58:17,658 | INFO     | . stage-in = 0 s
[2025-12-17 14:09:51] 2025-12-17 12:58:17,658 | INFO     | . payload execution = 11291 s
[2025-12-17 14:09:51] 2025-12-17 12:58:17,658 | INFO     | . stage-out = 1 s
[2025-12-17 14:09:51] 2025-12-17 12:58:17,658 | INFO     | . log creation = 0 s
[2025-12-17 14:09:51] 2025-12-17 12:58:17,658 | INFO     | ..............................
[2025-12-17 14:09:51] 2025-12-17 12:58:17,761 | INFO     | 
[2025-12-17 14:09:51] 2025-12-17 12:58:17,761 | INFO     | job summary report
[2025-12-17 14:09:51] 2025-12-17 12:58:17,761 | INFO     | --------------------------------------------------
[2025-12-17 14:09:51] 2025-12-17 12:58:17,761 | INFO     | PanDA job id: 6930761506
[2025-12-17 14:09:51] 2025-12-17 12:58:17,761 | INFO     | task id: 47886831
[2025-12-17 14:09:51] 2025-12-17 12:58:17,761 | INFO     | errors: (none)
[2025-12-17 14:09:51] 2025-12-17 12:58:17,761 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 14:09:51] 2025-12-17 12:58:17,762 | INFO     | pilot state: finished 
[2025-12-17 14:09:51] 2025-12-17 12:58:17,762 | INFO     | transexitcode: 0
[2025-12-17 14:09:51] 2025-12-17 12:58:17,762 | INFO     | exeerrorcode: 0
[2025-12-17 14:09:51] 2025-12-17 12:58:17,762 | INFO     | exeerrordiag: 
[2025-12-17 14:09:51] 2025-12-17 12:58:17,762 | INFO     | exitcode: 0
[2025-12-17 14:09:51] 2025-12-17 12:58:17,762 | INFO     | exitmsg: OK
[2025-12-17 14:09:51] 2025-12-17 12:58:17,762 | INFO     | cpuconsumptiontime: 43639 s
[2025-12-17 14:09:51] 2025-12-17 12:58:17,762 | INFO     | nevents: 400
[2025-12-17 14:09:51] 2025-12-17 12:58:17,762 | INFO     | neventsw: 0
[2025-12-17 14:09:51] 2025-12-17 12:58:17,762 | INFO     | pid: 2530553
[2025-12-17 14:09:51] 2025-12-17 12:58:17,762 | INFO     | pgrp: 2530553
[2025-12-17 14:09:51] 2025-12-17 12:58:17,763 | INFO     | corecount: 4
[2025-12-17 14:09:51] 2025-12-17 12:58:17,763 | INFO     | event service: False
[2025-12-17 14:09:51] 2025-12-17 12:58:17,763 | INFO     | sizes: {0: 2283165, 1: 2284032, 6: 2284294, 12: 2284322, 11301: 2313649, 11302: 2313648, 11303: 2322908, 11310: 2323046}
[2025-12-17 14:09:51] 2025-12-17 12:58:17,763 | INFO     | --------------------------------------------------
[2025-12-17 14:09:51] 2025-12-17 12:58:17,763 | INFO     | 
[2025-12-17 14:09:51] 2025-12-17 12:58:17,763 | INFO     | executing command: ls -lF /scratch/boinc/var/slot56/slots/0
[2025-12-17 14:09:51] 2025-12-17 12:58:17,786 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 14:09:51] 2025-12-17 12:58:17,787 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 14:09:51] 2025-12-17 12:58:17,787 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 14:09:51] 2025-12-17 12:58:17,787 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 14:09:51] 2025-12-17 12:58:17,787 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 14:09:51] 2025-12-17 12:58:17,787 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 14:09:51] 2025-12-17 12:58:17,787 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 14:09:51] 2025-12-17 12:58:17,787 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 14:09:51] 2025-12-17 12:58:17,787 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 14:09:51] 2025-12-17 12:58:17,787 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 14:09:51] 2025-12-17 12:58:17,787 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 14:09:51] 2025-12-17 12:58:17,787 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 14:09:51] 2025-12-17 12:58:17,788 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 14:09:51] 2025-12-17 12:58:17,788 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 14:09:51] 2025-12-17 12:58:17,788 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 14:09:51] 2025-12-17 12:58:17,788 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 14:09:51] 2025-12-17 12:58:17,788 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 14:09:51] 2025-12-17 12:58:17,788 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 14:09:51] 2025-12-17 12:58:17,788 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 14:09:51] 2025-12-17 12:58:17,788 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 14:09:51] 2025-12-17 12:58:17,788 | INFO     | job 6930761506 has completed (purged errors)
[2025-12-17 14:09:51] 2025-12-17 12:58:17,788 | INFO     | overall cleanup function is called
[2025-12-17 14:09:51] 2025-12-17 12:58:18,796 | INFO     | --- collectZombieJob: --- 10, [2530553]
[2025-12-17 14:09:51] 2025-12-17 12:58:18,797 | INFO     | zombie collector waiting for pid 2530553
[2025-12-17 14:09:51] 2025-12-17 12:58:18,797 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 14:09:51] 2025-12-17 12:58:18,797 | INFO     | collected zombie processes
[2025-12-17 14:09:51] 2025-12-17 12:58:18,797 | INFO     | will attempt to kill all subprocesses of pid=2530553
[2025-12-17 14:09:51] 2025-12-17 12:58:19,168 | INFO     | process IDs to be killed: [2530553] (in reverse order)
[2025-12-17 14:09:51] 2025-12-17 12:58:19,278 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 14:09:51] 2025-12-17 12:58:19,278 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 14:09:51] 2025-12-17 12:58:19,292 | INFO     | did not find any defunct processes belonging to 2530553
[2025-12-17 14:09:51] 2025-12-17 12:58:19,305 | INFO     | did not find any defunct processes belonging to 2530553
[2025-12-17 14:09:51] 2025-12-17 12:58:19,306 | INFO     | ready for new job
[2025-12-17 14:09:51] 2025-12-17 12:58:19,306 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 14:09:51] 2025-12-17 12:58:19,308 | INFO     | ***************************************
[2025-12-17 14:09:51] 2025-12-17 12:58:19,308 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 14:09:51] 2025-12-17 12:58:19,308 | INFO     | ***************************************
[2025-12-17 14:09:51] 2025-12-17 12:58:19,308 | INFO     | 
[2025-12-17 14:09:51] 2025-12-17 12:58:19,312 | INFO     | architecture information:
[2025-12-17 14:09:51] 2025-12-17 12:58:19,313 | INFO     | executing command: cat /etc/os-release
[2025-12-17 14:09:51] 2025-12-17 12:58:19,328 | INFO     | cat /etc/os-release:
[2025-12-17 14:09:51] NAME="CentOS Linux"
[2025-12-17 14:09:51] VERSION="7 (Core)"
[2025-12-17 14:09:51] ID="centos"
[2025-12-17 14:09:51] ID_LIKE="rhel fedora"
[2025-12-17 14:09:51] VERSION_ID="7"
[2025-12-17 14:09:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 14:09:51] ANSI_COLOR="0;31"
[2025-12-17 14:09:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 14:09:51] HOME_URL="https://www.centos.org/"
[2025-12-17 14:09:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 14:09:51] 
[2025-12-17 14:09:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 14:09:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 14:09:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 14:09:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 14:09:51] 
[2025-12-17 14:09:51] 2025-12-17 12:58:19,329 | INFO     | ***************************************
[2025-12-17 14:09:51] 2025-12-17 12:58:19,832 | INFO     | executing command: df -mP /scratch/boinc/var/slot56/slots/0
[2025-12-17 14:09:51] 2025-12-17 12:58:19,848 | INFO     | sufficient remaining disk space (604335243264 B)
[2025-12-17 14:09:51] 2025-12-17 12:58:19,849 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 14:09:51] 2025-12-17 12:58:19,849 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 14:09:51] 2025-12-17 12:58:19,849 | INFO     | update_server=False
[2025-12-17 14:09:51] 2025-12-17 12:58:19,849 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 14:09:51] 2025-12-17 12:58:19,849 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 14:09:51] 2025-12-17 12:58:20,117 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-17 14:09:51] 2025-12-17 12:58:20,117 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-17 14:09:51] 2025-12-17 12:58:20,117 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 14:09:51] 2025-12-17 12:58:20,117 | INFO     | will abort loop
[2025-12-17 14:09:51] 2025-12-17 12:58:20,264 | INFO     | all data control threads have been joined
[2025-12-17 14:09:51] 2025-12-17 12:58:20,381 | INFO     | all payload control threads have been joined
[2025-12-17 14:09:51] 2025-12-17 12:58:20,855 | INFO     | [job] retrieve thread has finished
[2025-12-17 14:09:51] 2025-12-17 12:58:20,991 | INFO     | all job control threads have been joined
[2025-12-17 14:09:51] 2025-12-17 12:58:21,121 | INFO     | [job] job monitor thread has finished
[2025-12-17 14:09:51] 2025-12-17 12:58:21,270 | INFO     | [data] control thread has finished
[2025-12-17 14:09:51] 2025-12-17 12:58:21,332 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 14:09:51] 2025-12-17 12:58:21,354 | INFO     | [payload] failed_post thread has finished
[2025-12-17 14:09:51] 2025-12-17 12:58:21,386 | INFO     | [payload] control thread has finished
[2025-12-17 14:09:51] 2025-12-17 12:58:21,457 | INFO     | [job] validate thread has finished
[2025-12-17 14:09:51] 2025-12-17 12:58:21,474 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 14:09:51] 2025-12-17 12:58:21,577 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 14:09:51] 2025-12-17 12:58:21,818 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 14:09:51] 2025-12-17 12:58:21,837 | INFO     | [data] copytool_in thread has finished
[2025-12-17 14:09:51] 2025-12-17 12:58:21,855 | INFO     | [data] copytool_out thread has finished
[2025-12-17 14:09:51] 2025-12-17 12:58:21,997 | INFO     | [job] control thread has finished
[2025-12-17 14:09:51] 2025-12-17 12:58:22,004 | INFO     | [payload] validate_post thread has finished
[2025-12-17 14:09:51] 2025-12-17 12:58:22,311 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 14:09:51] 2025-12-17 12:58:22,770 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 14:09:51] 2025-12-17 12:58:23,771 | INFO     | [job] queue monitor thread has finished
[2025-12-17 14:09:51] 2025-12-17 12:58:25,480 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 14:09:51] 2025-12-17 12:58:49,851 | INFO     | [monitor] cgroup control has ended
[2025-12-17 14:09:51] 2025-12-17 12:58:49,936 | INFO     | PID=2523616 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-17 14:09:51] 2025-12-17 12:58:49,937 | INFO     | .. there are 3 such processes running
[2025-12-17 14:09:51] 2025-12-17 12:58:49,937 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 14:09:51] 2025-12-17 12:58:49,938 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 14:09:51] 2025-12-17 12:58:49,938 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 14:09:51] 2025-12-17 12:58:51,092 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22421513844544)>', '<ExcThread(monitor, started 22420798822144)>']
[2025-12-17 14:09:51] 2025-12-17 12:58:51,948 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 14:09:51] 2025-12-17 12:58:51,948 | INFO     | [monitor] control thread has ended
[2025-12-17 14:09:51] 2025-12-17 12:58:56,116 | INFO     | all workflow threads have been joined
[2025-12-17 14:09:51] 2025-12-17 12:58:56,117 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 14:09:51] 2025-12-17 12:58:56,117 | INFO     | traces error code: 0
[2025-12-17 14:09:51] 2025-12-17 12:58:56,117 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 14:09:51] 2025-12-17 12:58:56,274 [wrapper] ==== pilot stdout END ====
[2025-12-17 14:09:51] 2025-12-17 12:58:56,276 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 14:09:51] 2025-12-17 12:58:56,279 [wrapper] pilotpid: 2523616
[2025-12-17 14:09:51] 2025-12-17 12:58:56,281 [wrapper] Pilot exit status: 0
[2025-12-17 14:09:51] 2025-12-17 12:58:56,290 [wrapper] pandaids: 6930761506
[2025-12-17 14:09:51] 2025-12-17 12:58:56,366 [wrapper] cleanup supervisor_pilot 2695877 2523617
[2025-12-17 14:09:51] 2025-12-17 12:58:56,369 [wrapper] Test setup, not cleaning
[2025-12-17 14:09:51] 2025-12-17 12:58:56,371 [wrapper] apfmon messages muted
[2025-12-17 14:09:51] 2025-12-17 12:58:56,374 [wrapper] ==== wrapper stdout END ====
[2025-12-17 14:09:51] 2025-12-17 12:58:56,377 [wrapper] ==== wrapper stderr END ====
[2025-12-17 14:09:51]  *** Error codes and diagnostics ***
[2025-12-17 14:09:51]     "exeErrorCode": 0,
[2025-12-17 14:09:51]     "exeErrorDiag": "",
[2025-12-17 14:09:51]     "pilotErrorCode": 0,
[2025-12-17 14:09:51]     "pilotErrorDiag": "",
[2025-12-17 14:09:51]  *** Listing of results directory ***
[2025-12-17 14:09:51] total 345168
[2025-12-17 14:09:51] -rw-r--r-- 1 boinc boinc    579449 Dec 16 07:04 pilot3.tar.gz
[2025-12-17 14:09:51] -rwx------ 1 boinc boinc     36322 Dec 16 07:08 runpilot2-wrapper.sh
[2025-12-17 14:09:51] -rw-r--r-- 1 boinc boinc      5112 Dec 16 07:11 queuedata.json
[2025-12-17 14:09:51] -rw-r--r-- 1 boinc boinc       100 Dec 17 10:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 14:09:51] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 10:49 run_atlas
[2025-12-17 14:09:51] -rw-r--r-- 1 boinc boinc       105 Dec 17 10:49 job.xml
[2025-12-17 14:09:51] -rw-r--r-- 1 boinc boinc      6638 Dec 17 10:49 init_data.xml
[2025-12-17 14:09:51] -rw-r--r-- 2 boinc boinc 194064763 Dec 17 10:49 EVNT.47886829._000513.pool.root.1
[2025-12-17 14:09:51] drwxrwx--x 2 boinc boinc      4096 Dec 17 10:49 shared
[2025-12-17 14:09:51] -rw-r--r-- 2 boinc boinc    592415 Dec 17 10:49 input.tar.gz
[2025-12-17 14:09:51] -rw-r--r-- 2 boinc boinc     15847 Dec 17 10:49 start_atlas.sh
[2025-12-17 14:09:51] -rw-r--r-- 1 boinc boinc         0 Dec 17 10:49 boinc_lockfile
[2025-12-17 14:09:51] -rw-r--r-- 1 boinc boinc      2539 Dec 17 10:49 pandaJob.out
[2025-12-17 14:09:51] -rw------- 1 boinc boinc    987431 Dec 17 10:49 agis_schedconf.cvmfs.json
[2025-12-17 14:09:51] drwx------ 5 boinc boinc      4096 Dec 17 10:49 pilot3
[2025-12-17 14:09:51] -rw------- 1 boinc boinc 151497772 Dec 17 13:57 HITS.47886831._012513.pool.root.1
[2025-12-17 14:09:51] -rw-r--r-- 1 boinc boinc       529 Dec 17 13:57 boinc_task_state.xml
[2025-12-17 14:09:51] -rw------- 1 boinc boinc      1036 Dec 17 13:58 memory_monitor_summary.json
[2025-12-17 14:09:51] -rw------- 1 boinc boinc   1516240 Dec 17 13:58 agis_ddmendpoints.agis.ALL.json
[2025-12-17 14:09:51] -rw------- 1 boinc boinc    374793 Dec 17 13:58 log.47886831._012513.job.log.tgz.1
[2025-12-17 14:09:51] -rw------- 1 boinc boinc      7829 Dec 17 13:58 heartbeat.json
[2025-12-17 14:09:51] -rw------- 1 boinc boinc        95 Dec 17 13:58 pilot_heartbeat.json
[2025-12-17 14:09:51] -rw------- 1 boinc boinc      5019 Dec 17 13:58 pilotlog.txt
[2025-12-17 14:09:51] -rw------- 1 boinc boinc   1611055 Dec 17 13:58 log.47886831._012513.job.log.1
[2025-12-17 14:09:51] -rw------- 1 boinc boinc       357 Dec 17 13:58 output.list
[2025-12-17 14:09:51] -rw-r--r-- 1 boinc boinc       620 Dec 17 13:58 runtime_log
[2025-12-17 14:09:51] -rw------- 1 boinc boinc   2007040 Dec 17 13:58 result.tar.gz
[2025-12-17 14:09:51] -rw-r--r-- 1 boinc boinc      9206 Dec 17 13:58 runtime_log.err
[2025-12-17 14:09:51] -rw------- 1 boinc boinc       665 Dec 17 13:58 istKDmSPdp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm2FVKDm41ko7m.diag
[2025-12-17 14:09:51] -rw-r--r-- 1 boinc boinc        26 Dec 17 14:09 wrapper_checkpoint.txt
[2025-12-17 14:09:51] -rw-r--r-- 1 boinc boinc      8192 Dec 17 14:09 boinc_mmap_file
[2025-12-17 14:09:51] -rw-r--r-- 1 boinc boinc     20873 Dec 17 14:09 stderr.txt
[2025-12-17 14:09:51] HITS file was successfully produced:
[2025-12-17 14:09:51] -rw------- 1 boinc boinc 151497772 Dec 17 13:57 shared/HITS.pool.root.1
[2025-12-17 14:09:51]  *** Contents of shared directory: ***
[2025-12-17 14:09:51] total 340032
[2025-12-17 14:09:51] -rw-r--r-- 2 boinc boinc 194064763 Dec 17 10:49 ATLAS.root_0
[2025-12-17 14:09:51] -rw-r--r-- 2 boinc boinc    592415 Dec 17 10:49 input.tar.gz
[2025-12-17 14:09:51] -rw-r--r-- 2 boinc boinc     15847 Dec 17 10:49 start_atlas.sh
[2025-12-17 14:09:51] -rw------- 1 boinc boinc 151497772 Dec 17 13:57 HITS.pool.root.1
[2025-12-17 14:09:51] -rw------- 1 boinc boinc   2007040 Dec 17 13:58 result.tar.gz
14:09:53 (2519457): run_atlas exited; CPU time 44129.914805
14:09:53 (2519457): called boinc_finish(0)

</stderr_txt>
]]>

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