Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:45:55 (2440096): wrapper (7.7.26015): starting
09:45:55 (2440096): wrapper: running run_atlas (--nthreads 4)
[2025-12-17 09:45:55] Arguments: --nthreads 4
[2025-12-17 09:45:55] Threads: 4
[2025-12-17 09:45:55] Checking for CVMFS
[2025-12-17 09:45:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 09:45:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 09:45:55] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 09:45:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 09:45:55] 2.9.2.0 382260 5641 96084 154105 3 57 25424488 36864001 0 130560 0 4419795 99.991 208360 16125 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-17 09:45:55] CVMFS is ok
[2025-12-17 09:45:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 09:45:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 09:45:55] Further information can be found at the LHC@home message board.
[2025-12-17 09:45:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 09:45:55] Checking for apptainer binary...
[2025-12-17 09:45:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 09:45:55] Running /usr/bin/apptainer --version
[2025-12-17 09:45:55] apptainer version 1.4.1-1.1
[2025-12-17 09:45:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 09:45:55] atlasA237
[2025-12-17 09:45:55] apptainer works
[2025-12-17 09:45:55] Set ATHENA_PROC_NUMBER=4
[2025-12-17 09:45:55] Set ATHENA_CORE_NUMBER=4
[2025-12-17 09:45:55] Starting ATLAS job with PandaID=6930760657
[2025-12-17 09:45:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 11:23:20]  *** The last 200 lines of the pilot log: ***
[2025-12-17 11:23:20] 2025-12-17 10:22:49,360 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 11:23:20] 2025-12-17 10:22:49,360 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 11:23:20] 2025-12-17 10:22:49,360 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 11:23:20] 2025-12-17 10:22:49,360 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 11:23:20] 2025-12-17 10:22:49,360 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 11:23:20] 2025-12-17 10:22:49,360 | INFO     | job 6930760657 has completed (purged errors)
[2025-12-17 11:23:20] 2025-12-17 10:22:49,360 | INFO     | overall cleanup function is called
[2025-12-17 11:23:20] 2025-12-17 10:22:50,367 | INFO     | --- collectZombieJob: --- 10, [2450515]
[2025-12-17 11:23:20] 2025-12-17 10:22:50,367 | INFO     | zombie collector waiting for pid 2450515
[2025-12-17 11:23:20] 2025-12-17 10:22:50,367 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 11:23:20] 2025-12-17 10:22:50,367 | INFO     | collected zombie processes
[2025-12-17 11:23:20] 2025-12-17 10:22:50,367 | INFO     | will attempt to kill all subprocesses of pid=2450515
[2025-12-17 11:23:20] 2025-12-17 10:22:50,429 | INFO     | process IDs to be killed: [2450515] (in reverse order)
[2025-12-17 11:23:20] 2025-12-17 10:22:50,466 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 11:23:20] 2025-12-17 10:22:50,466 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 11:23:20] 2025-12-17 10:22:50,469 | INFO     | did not find any defunct processes belonging to 2450515
[2025-12-17 11:23:20] 2025-12-17 10:22:50,471 | INFO     | did not find any defunct processes belonging to 2450515
[2025-12-17 11:23:20] 2025-12-17 10:22:50,471 | INFO     | ready for new job
[2025-12-17 11:23:20] 2025-12-17 10:22:50,471 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 11:23:20] 2025-12-17 10:22:50,472 | INFO     | ***************************************
[2025-12-17 11:23:20] 2025-12-17 10:22:50,472 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 11:23:20] 2025-12-17 10:22:50,472 | INFO     | ***************************************
[2025-12-17 11:23:20] 2025-12-17 10:22:50,472 | INFO     | 
[2025-12-17 11:23:20] 2025-12-17 10:22:50,472 | INFO     | architecture information:
[2025-12-17 11:23:20] 2025-12-17 10:22:50,472 | INFO     | executing command: cat /etc/os-release
[2025-12-17 11:23:20] 2025-12-17 10:22:50,485 | INFO     | cat /etc/os-release:
[2025-12-17 11:23:20] NAME="CentOS Linux"
[2025-12-17 11:23:20] VERSION="7 (Core)"
[2025-12-17 11:23:20] ID="centos"
[2025-12-17 11:23:20] ID_LIKE="rhel fedora"
[2025-12-17 11:23:20] VERSION_ID="7"
[2025-12-17 11:23:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 11:23:20] ANSI_COLOR="0;31"
[2025-12-17 11:23:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 11:23:20] HOME_URL="https://www.centos.org/"
[2025-12-17 11:23:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 11:23:20] 
[2025-12-17 11:23:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 11:23:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 11:23:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 11:23:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 11:23:20] 
[2025-12-17 11:23:20] 2025-12-17 10:22:50,485 | INFO     | ***************************************
[2025-12-17 11:23:20] 2025-12-17 10:22:50,989 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-17 11:23:20] 2025-12-17 10:22:51,005 | INFO     | sufficient remaining disk space (334415003648 B)
[2025-12-17 11:23:20] 2025-12-17 10:22:51,005 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 11:23:20] 2025-12-17 10:22:51,005 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 11:23:20] 2025-12-17 10:22:51,005 | INFO     | update_server=False
[2025-12-17 11:23:20] 2025-12-17 10:22:51,005 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 11:23:20] 2025-12-17 10:22:51,005 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 11:23:20] 2025-12-17 10:22:51,273 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 11:23:20] 2025-12-17 10:22:51,367 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 11:23:20] 2025-12-17 10:22:51,367 | INFO     | aborting loop
[2025-12-17 11:23:20] 2025-12-17 10:22:51,412 | INFO     | all data control threads have been joined
[2025-12-17 11:23:20] 2025-12-17 10:22:51,799 | INFO     | all job control threads have been joined
[2025-12-17 11:23:20] 2025-12-17 10:22:51,806 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 11:23:20] 2025-12-17 10:22:52,011 | INFO     | [job] retrieve thread has finished
[2025-12-17 11:23:20] 2025-12-17 10:22:52,011 | INFO     | [job] queue monitor thread has finished
[2025-12-17 11:23:20] 2025-12-17 10:22:52,061 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 11:23:20] 2025-12-17 10:22:52,372 | INFO     | [job] job monitor thread has finished
[2025-12-17 11:23:20] 2025-12-17 10:22:52,418 | INFO     | [data] control thread has finished
[2025-12-17 11:23:20] 2025-12-17 10:22:52,421 | INFO     | [data] copytool_in thread has finished
[2025-12-17 11:23:20] 2025-12-17 10:22:52,428 | INFO     | [payload] validate_post thread has finished
[2025-12-17 11:23:20] 2025-12-17 10:22:52,494 | INFO     | all payload control threads have been joined
[2025-12-17 11:23:20] 2025-12-17 10:22:52,805 | INFO     | [job] control thread has finished
[2025-12-17 11:23:20] 2025-12-17 10:22:53,279 | INFO     | [data] copytool_out thread has finished
[2025-12-17 11:23:20] 2025-12-17 10:22:53,357 | INFO     | [job] validate thread has finished
[2025-12-17 11:23:20] 2025-12-17 10:22:53,447 | INFO     | [payload] failed_post thread has finished
[2025-12-17 11:23:20] 2025-12-17 10:22:53,473 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 11:23:20] 2025-12-17 10:22:53,488 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 11:23:20] 2025-12-17 10:22:53,500 | INFO     | [payload] control thread has finished
[2025-12-17 11:23:20] 2025-12-17 10:22:55,813 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 11:23:20] 2025-12-17 10:23:01,815 | INFO     | job.realtimelogging is not enabled
[2025-12-17 11:23:20] 2025-12-17 10:23:02,821 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 11:23:20] 2025-12-17 10:23:09,838 | INFO     | [monitor] cgroup control has ended
[2025-12-17 11:23:20] 2025-12-17 10:23:10,943 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140337703016256)>', '<ExcThread(monitor, started 140336831649536)>']
[2025-12-17 11:23:20] 2025-12-17 10:23:15,969 | INFO     | all workflow threads have been joined
[2025-12-17 11:23:20] 2025-12-17 10:23:15,969 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 11:23:20] 2025-12-17 10:23:15,970 | INFO     | traces error code: 0
[2025-12-17 11:23:20] 2025-12-17 10:23:15,970 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 11:23:20] 2025-12-17 10:23:20,603 | INFO     | PID=2443896 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-17 11:23:20] 2025-12-17 10:23:20,603 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 11:23:20] 2025-12-17 10:23:20,603 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 11:23:20] 2025-12-17 10:23:20,603 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 11:23:20] 2025-12-17 10:23:20,603 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 11:23:20] 2025-12-17 10:23:20,604 | INFO     | [monitor] control thread has ended
[2025-12-17 11:23:20] 2025-12-17 10:23:20,670 [wrapper] ==== pilot stdout END ====
[2025-12-17 11:23:20] 2025-12-17 10:23:20,674 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 11:23:20] 2025-12-17 10:23:20,677 [wrapper] pilotpid: 2443896
[2025-12-17 11:23:20] 2025-12-17 10:23:20,681 [wrapper] Pilot exit status: 0
[2025-12-17 11:23:20] 2025-12-17 10:23:20,693 [wrapper] pandaids: 6930760657
[2025-12-17 11:23:20] 2025-12-17 10:23:20,718 [wrapper] cleanup supervisor_pilot 2468535 2443897
[2025-12-17 11:23:20] 2025-12-17 10:23:20,722 [wrapper] Test setup, not cleaning
[2025-12-17 11:23:20] 2025-12-17 10:23:20,725 [wrapper] apfmon messages muted
[2025-12-17 11:23:20] 2025-12-17 10:23:20,729 [wrapper] ==== wrapper stdout END ====
[2025-12-17 11:23:20] 2025-12-17 10:23:20,732 [wrapper] ==== wrapper stderr END ====
[2025-12-17 11:23:20]  *** Error codes and diagnostics ***
[2025-12-17 11:23:20]     "exeErrorCode": 0,
[2025-12-17 11:23:20]     "exeErrorDiag": "",
[2025-12-17 11:23:20]     "pilotErrorCode": 0,
[2025-12-17 11:23:20]     "pilotErrorDiag": "",
[2025-12-17 11:23:20]  *** Listing of results directory ***
[2025-12-17 11:23:20] total 413848
[2025-12-17 11:23:20] -rw-r--r-- 1 boinc boinc    579449 Dec 16 07:04 pilot3.tar.gz
[2025-12-17 11:23:20] -rwx------ 1 boinc boinc     36322 Dec 16 07:07 runpilot2-wrapper.sh
[2025-12-17 11:23:20] -rw-r--r-- 1 boinc boinc      5112 Dec 16 07:09 queuedata.json
[2025-12-17 11:23:20] -rw-r--r-- 1 boinc boinc       100 Dec 17 09:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 11:23:20] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 09:45 run_atlas
[2025-12-17 11:23:20] -rw-r--r-- 1 boinc boinc       105 Dec 17 09:45 job.xml
[2025-12-17 11:23:20] -rw-r--r-- 2 boinc boinc 214745789 Dec 17 09:45 EVNT.47898779._000199.pool.root.1
[2025-12-17 11:23:20] -rw-r--r-- 2 boinc boinc    592395 Dec 17 09:45 input.tar.gz
[2025-12-17 11:23:20] -rw-r--r-- 2 boinc boinc     15847 Dec 17 09:45 start_atlas.sh
[2025-12-17 11:23:20] drwxrwx--x 2 boinc boinc      4096 Dec 17 09:45 shared
[2025-12-17 11:23:20] -rw-r--r-- 1 boinc boinc         0 Dec 17 09:45 boinc_setup_complete
[2025-12-17 11:23:20] -rw-r--r-- 1 boinc boinc      6372 Dec 17 09:45 init_data.xml
[2025-12-17 11:23:20] -rw-r--r-- 1 boinc boinc         0 Dec 17 09:45 boinc_lockfile
[2025-12-17 11:23:20] -rw-r--r-- 1 boinc boinc      2522 Dec 17 09:45 pandaJob.out
[2025-12-17 11:23:20] -rw------- 1 boinc boinc    987417 Dec 17 09:46 agis_schedconf.cvmfs.json
[2025-12-17 11:23:20] -rw------- 1 boinc boinc   1516240 Dec 17 09:46 agis_ddmendpoints.agis.ALL.json
[2025-12-17 11:23:20] drwx------ 5 boinc boinc      4096 Dec 17 09:46 pilot3
[2025-12-17 11:23:20] -rw------- 1 boinc boinc 202858389 Dec 17 11:22 HITS.47898782._004905.pool.root.1
[2025-12-17 11:23:20] -rw-r--r-- 1 boinc boinc       529 Dec 17 11:22 boinc_task_state.xml
[2025-12-17 11:23:20] -rw------- 1 boinc boinc        95 Dec 17 11:22 pilot_heartbeat.json
[2025-12-17 11:23:20] -rw------- 1 boinc boinc      1021 Dec 17 11:22 memory_monitor_summary.json
[2025-12-17 11:23:20] -rw------- 1 boinc boinc    298361 Dec 17 11:22 log.47898782._004905.job.log.tgz.1
[2025-12-17 11:23:20] -rw------- 1 boinc boinc      7767 Dec 17 11:22 heartbeat.json
[2025-12-17 11:23:20] -rw-r--r-- 1 boinc boinc      8192 Dec 17 11:23 boinc_mmap_file
[2025-12-17 11:23:20] -rw-r--r-- 1 boinc boinc        27 Dec 17 11:23 wrapper_checkpoint.txt
[2025-12-17 11:23:20] -rw------- 1 boinc boinc       747 Dec 17 11:23 pilotlog.txt
[2025-12-17 11:23:20] -rw------- 1 boinc boinc    843194 Dec 17 11:23 log.47898782._004905.job.log.1
[2025-12-17 11:23:20] -rw------- 1 boinc boinc       357 Dec 17 11:23 output.list
[2025-12-17 11:23:20] -rw-r--r-- 1 boinc boinc       620 Dec 17 11:23 runtime_log
[2025-12-17 11:23:20] -rw------- 1 boinc boinc   1157120 Dec 17 11:23 result.tar.gz
[2025-12-17 11:23:20] -rw-r--r-- 1 boinc boinc      8912 Dec 17 11:23 runtime_log.err
[2025-12-17 11:23:20] -rw------- 1 boinc boinc       662 Dec 17 11:23 h9pKDmgOdp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmfEVKDmCTb1Vm.diag
[2025-12-17 11:23:20] -rw-r--r-- 1 boinc boinc     11413 Dec 17 11:23 stderr.txt
[2025-12-17 11:23:20] HITS file was successfully produced:
[2025-12-17 11:23:20] -rw------- 1 boinc boinc 202858389 Dec 17 11:22 shared/HITS.pool.root.1
[2025-12-17 11:23:20]  *** Contents of shared directory: ***
[2025-12-17 11:23:20] total 409556
[2025-12-17 11:23:20] -rw-r--r-- 2 boinc boinc 214745789 Dec 17 09:45 ATLAS.root_0
[2025-12-17 11:23:20] -rw-r--r-- 2 boinc boinc    592395 Dec 17 09:45 input.tar.gz
[2025-12-17 11:23:20] -rw-r--r-- 2 boinc boinc     15847 Dec 17 09:45 start_atlas.sh
[2025-12-17 11:23:20] -rw------- 1 boinc boinc 202858389 Dec 17 11:22 HITS.pool.root.1
[2025-12-17 11:23:20] -rw------- 1 boinc boinc   1157120 Dec 17 11:23 result.tar.gz
11:23:22 (2440096): run_atlas exited; CPU time 22217.623637
11:23:22 (2440096): called boinc_finish(0)

</stderr_txt>
]]>

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