Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:18:18 (822452): wrapper (7.7.26015): starting
02:18:18 (822452): wrapper: running run_atlas (--nthreads 3)
[2025-12-17 02:18:18] Arguments: --nthreads 3
[2025-12-17 02:18:18] Threads: 3
[2025-12-17 02:18:18] Checking for CVMFS
[2025-12-17 02:18:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 02:18:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 02:18:19] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 02:18:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 02:18:19] 2.9.2.0 3658277 5335 83600 154094 0 57 19798694 36864000 0 130560 0 3554693 99.989 193243 14776 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-17 02:18:19] CVMFS is ok
[2025-12-17 02:18:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 02:18:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 02:18:19] Further information can be found at the LHC@home message board.
[2025-12-17 02:18:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 02:18:19] Checking for apptainer binary...
[2025-12-17 02:18:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 02:18:19] Running /usr/bin/apptainer --version
[2025-12-17 02:18:19] apptainer version 1.4.1-1.1
[2025-12-17 02:18:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 02:18:19] thA305b
[2025-12-17 02:18:19] apptainer works
[2025-12-17 02:18:19] Set ATHENA_PROC_NUMBER=3
[2025-12-17 02:18:19] Set ATHENA_CORE_NUMBER=3
[2025-12-17 02:18:19] Starting ATLAS job with PandaID=6930760558
[2025-12-17 02:18:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 04:06:38]  *** The last 200 lines of the pilot log: ***
[2025-12-17 04:06:38] 2025-12-17 03:05:56,406 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 04:06:38] 2025-12-17 03:05:56,406 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 04:06:38] 2025-12-17 03:05:56,406 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 04:06:38] 2025-12-17 03:05:56,406 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 04:06:38] 2025-12-17 03:05:56,406 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 04:06:38] 2025-12-17 03:05:56,407 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 04:06:38] 2025-12-17 03:05:56,407 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 04:06:38] 2025-12-17 03:05:56,407 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 04:06:38] 2025-12-17 03:05:56,407 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 04:06:38] 2025-12-17 03:05:56,407 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 04:06:38] 2025-12-17 03:05:56,407 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 04:06:38] 2025-12-17 03:05:56,407 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 04:06:38] 2025-12-17 03:05:56,407 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 04:06:38] 2025-12-17 03:05:56,407 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 04:06:38] 2025-12-17 03:05:56,407 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 04:06:38] 2025-12-17 03:05:56,407 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 04:06:38] 2025-12-17 03:05:56,407 | INFO     | job 6930760558 has completed (purged errors)
[2025-12-17 04:06:38] 2025-12-17 03:05:56,407 | INFO     | overall cleanup function is called
[2025-12-17 04:06:38] 2025-12-17 03:05:57,414 | INFO     | --- collectZombieJob: --- 10, [832622]
[2025-12-17 04:06:38] 2025-12-17 03:05:57,414 | INFO     | zombie collector waiting for pid 832622
[2025-12-17 04:06:38] 2025-12-17 03:05:57,414 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 04:06:38] 2025-12-17 03:05:57,414 | INFO     | collected zombie processes
[2025-12-17 04:06:38] 2025-12-17 03:05:57,414 | INFO     | will attempt to kill all subprocesses of pid=832622
[2025-12-17 04:06:38] 2025-12-17 03:05:57,459 | INFO     | process IDs to be killed: [832622] (in reverse order)
[2025-12-17 04:06:38] 2025-12-17 03:05:57,485 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 04:06:38] 2025-12-17 03:05:57,485 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 04:06:38] 2025-12-17 03:05:57,487 | INFO     | did not find any defunct processes belonging to 832622
[2025-12-17 04:06:38] 2025-12-17 03:05:57,488 | INFO     | did not find any defunct processes belonging to 832622
[2025-12-17 04:06:38] 2025-12-17 03:05:57,488 | INFO     | ready for new job
[2025-12-17 04:06:38] 2025-12-17 03:05:57,488 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 04:06:38] 2025-12-17 03:05:57,489 | INFO     | ***************************************
[2025-12-17 04:06:38] 2025-12-17 03:05:57,489 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 04:06:38] 2025-12-17 03:05:57,489 | INFO     | ***************************************
[2025-12-17 04:06:38] 2025-12-17 03:05:57,489 | INFO     | 
[2025-12-17 04:06:38] 2025-12-17 03:05:57,489 | INFO     | architecture information:
[2025-12-17 04:06:38] 2025-12-17 03:05:57,489 | INFO     | executing command: cat /etc/os-release
[2025-12-17 04:06:38] 2025-12-17 03:05:57,498 | INFO     | cat /etc/os-release:
[2025-12-17 04:06:38] NAME="CentOS Linux"
[2025-12-17 04:06:38] VERSION="7 (Core)"
[2025-12-17 04:06:38] ID="centos"
[2025-12-17 04:06:38] ID_LIKE="rhel fedora"
[2025-12-17 04:06:38] VERSION_ID="7"
[2025-12-17 04:06:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 04:06:38] ANSI_COLOR="0;31"
[2025-12-17 04:06:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 04:06:38] HOME_URL="https://www.centos.org/"
[2025-12-17 04:06:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 04:06:38] 
[2025-12-17 04:06:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 04:06:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 04:06:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 04:06:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 04:06:38] 
[2025-12-17 04:06:38] 2025-12-17 03:05:57,498 | INFO     | ***************************************
[2025-12-17 04:06:38] 2025-12-17 03:05:58,002 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-17 04:06:38] 2025-12-17 03:05:58,015 | INFO     | sufficient remaining disk space (184846123008 B)
[2025-12-17 04:06:38] 2025-12-17 03:05:58,016 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 04:06:38] 2025-12-17 03:05:58,016 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 04:06:38] 2025-12-17 03:05:58,016 | INFO     | update_server=False
[2025-12-17 04:06:38] 2025-12-17 03:05:58,016 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 04:06:38] 2025-12-17 03:05:58,016 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-17 04:06:38] 2025-12-17 03:05:58,016 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 04:06:38] 2025-12-17 03:05:58,016 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 04:06:38] 2025-12-17 03:05:58,016 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 04:06:38] 2025-12-17 03:05:58,016 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 04:06:38] 2025-12-17 03:05:58,016 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 04:06:38] 2025-12-17 03:05:58,155 | INFO     | all job control threads have been joined
[2025-12-17 04:06:38] 2025-12-17 03:05:58,156 | INFO     | all payload control threads have been joined
[2025-12-17 04:06:38] 2025-12-17 03:05:58,385 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-17 04:06:38] 2025-12-17 03:05:58,385 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-17 04:06:38] 2025-12-17 03:05:58,385 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 04:06:38] 2025-12-17 03:05:58,385 | INFO     | will abort loop
[2025-12-17 04:06:38] 2025-12-17 03:05:58,843 | INFO     | all data control threads have been joined
[2025-12-17 04:06:38] 2025-12-17 03:05:59,008 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 04:06:38] 2025-12-17 03:05:59,021 | INFO     | [job] retrieve thread has finished
[2025-12-17 04:06:38] 2025-12-17 03:05:59,022 | INFO     | [job] queue monitor thread has finished
[2025-12-17 04:06:38] 2025-12-17 03:05:59,086 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 04:06:38] 2025-12-17 03:05:59,161 | INFO     | [job] control thread has finished
[2025-12-17 04:06:38] 2025-12-17 03:05:59,161 | INFO     | [payload] control thread has finished
[2025-12-17 04:06:38] 2025-12-17 03:05:59,391 | INFO     | [job] job monitor thread has finished
[2025-12-17 04:06:38] 2025-12-17 03:05:59,615 | INFO     | [payload] validate_post thread has finished
[2025-12-17 04:06:38] 2025-12-17 03:05:59,707 | INFO     | [data] copytool_in thread has finished
[2025-12-17 04:06:38] 2025-12-17 03:05:59,849 | INFO     | [data] control thread has finished
[2025-12-17 04:06:38] 2025-12-17 03:05:59,960 | INFO     | [payload] failed_post thread has finished
[2025-12-17 04:06:38] 2025-12-17 03:05:59,967 | INFO     | [job] validate thread has finished
[2025-12-17 04:06:38] 2025-12-17 03:06:00,092 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 04:06:38] 2025-12-17 03:06:00,093 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 04:06:38] 2025-12-17 03:06:01,014 | INFO     | [data] copytool_out thread has finished
[2025-12-17 04:06:38] 2025-12-17 03:06:02,023 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 04:06:38] 2025-12-17 03:06:08,069 | INFO     | job.realtimelogging is not enabled
[2025-12-17 04:06:38] 2025-12-17 03:06:09,070 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 04:06:38] 2025-12-17 03:06:32,302 | INFO     | [monitor] cgroup control has ended
[2025-12-17 04:06:38] 2025-12-17 03:06:33,312 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139684396541760)>', '<ExcThread(monitor, started 139683895940864)>']
[2025-12-17 04:06:38] 2025-12-17 03:06:34,206 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 04:06:38] 2025-12-17 03:06:34,207 | INFO     | [monitor] control thread has ended
[2025-12-17 04:06:38] 2025-12-17 03:06:38,335 | INFO     | all workflow threads have been joined
[2025-12-17 04:06:38] 2025-12-17 03:06:38,335 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 04:06:38] 2025-12-17 03:06:38,335 | INFO     | traces error code: 0
[2025-12-17 04:06:38] 2025-12-17 03:06:38,335 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 04:06:38] 2025-12-17 03:06:38,387 [wrapper] ==== pilot stdout END ====
[2025-12-17 04:06:38] 2025-12-17 03:06:38,390 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 04:06:38] 2025-12-17 03:06:38,392 [wrapper] pilotpid: 826175
[2025-12-17 04:06:38] 2025-12-17 03:06:38,395 [wrapper] Pilot exit status: 0
[2025-12-17 04:06:38] 2025-12-17 03:06:38,402 [wrapper] pandaids: 6930760558
[2025-12-17 04:06:38] 2025-12-17 03:06:38,420 [wrapper] cleanup supervisor_pilot  847040 826176
[2025-12-17 04:06:38] 2025-12-17 03:06:38,422 [wrapper] Test setup, not cleaning
[2025-12-17 04:06:38] 2025-12-17 03:06:38,425 [wrapper] apfmon messages muted
[2025-12-17 04:06:38] 2025-12-17 03:06:38,427 [wrapper] ==== wrapper stdout END ====
[2025-12-17 04:06:38] 2025-12-17 03:06:38,430 [wrapper] ==== wrapper stderr END ====
[2025-12-17 04:06:38]  *** Error codes and diagnostics ***
[2025-12-17 04:06:38]     "exeErrorCode": 0,
[2025-12-17 04:06:38]     "exeErrorDiag": "",
[2025-12-17 04:06:38]     "pilotErrorCode": 0,
[2025-12-17 04:06:38]     "pilotErrorDiag": "",
[2025-12-17 04:06:38]  *** Listing of results directory ***
[2025-12-17 04:06:38] total 403860
[2025-12-17 04:06:38] -rw-r--r-- 1 boinc boinc    579449 Dec 16 07:04 pilot3.tar.gz
[2025-12-17 04:06:38] -rwx------ 1 boinc boinc     36322 Dec 16 07:05 runpilot2-wrapper.sh
[2025-12-17 04:06:38] -rw-r--r-- 1 boinc boinc      5112 Dec 16 07:07 queuedata.json
[2025-12-17 04:06:38] -rw-r--r-- 1 boinc boinc       100 Dec 17 02:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 04:06:38] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 02:18 run_atlas
[2025-12-17 04:06:38] -rw-r--r-- 1 boinc boinc       105 Dec 17 02:18 job.xml
[2025-12-17 04:06:38] -rw-r--r-- 2 boinc boinc 212572572 Dec 17 02:18 EVNT.47898779._000196.pool.root.1
[2025-12-17 04:06:38] drwxrwx--x 2 boinc boinc      4096 Dec 17 02:18 shared
[2025-12-17 04:06:38] -rw-r--r-- 2 boinc boinc    592383 Dec 17 02:18 input.tar.gz
[2025-12-17 04:06:38] -rw-r--r-- 2 boinc boinc     15847 Dec 17 02:18 start_atlas.sh
[2025-12-17 04:06:38] -rw-r--r-- 1 boinc boinc         0 Dec 17 02:18 boinc_setup_complete
[2025-12-17 04:06:38] -rw-r--r-- 1 boinc boinc      6447 Dec 17 02:18 init_data.xml
[2025-12-17 04:06:38] -rw-r--r-- 1 boinc boinc         0 Dec 17 02:18 boinc_lockfile
[2025-12-17 04:06:38] -rw-r--r-- 1 boinc boinc      2519 Dec 17 02:18 pandaJob.out
[2025-12-17 04:06:38] -rw------- 1 boinc boinc    987393 Dec 17 02:18 agis_schedconf.cvmfs.json
[2025-12-17 04:06:38] -rw------- 1 boinc boinc   1516240 Dec 17 02:18 agis_ddmendpoints.agis.ALL.json
[2025-12-17 04:06:38] drwx------ 5 boinc boinc      4096 Dec 17 02:18 pilot3
[2025-12-17 04:06:38] -rw------- 1 boinc boinc 194693280 Dec 17 04:05 HITS.47898782._004806.pool.root.1
[2025-12-17 04:06:38] -rw-r--r-- 1 boinc boinc       529 Dec 17 04:05 boinc_task_state.xml
[2025-12-17 04:06:38] -rw------- 1 boinc boinc      1014 Dec 17 04:05 memory_monitor_summary.json
[2025-12-17 04:06:38] -rw------- 1 boinc boinc    258893 Dec 17 04:05 log.47898782._004806.job.log.tgz.1
[2025-12-17 04:06:38] -rw------- 1 boinc boinc      7745 Dec 17 04:05 heartbeat.json
[2025-12-17 04:06:38] -rw------- 1 boinc boinc        95 Dec 17 04:05 pilot_heartbeat.json
[2025-12-17 04:06:38] -rw-r--r-- 1 boinc boinc      8192 Dec 17 04:06 boinc_mmap_file
[2025-12-17 04:06:38] -rw-r--r-- 1 boinc boinc        27 Dec 17 04:06 wrapper_checkpoint.txt
[2025-12-17 04:06:38] -rw------- 1 boinc boinc      4814 Dec 17 04:06 pilotlog.txt
[2025-12-17 04:06:38] -rw------- 1 boinc boinc    932065 Dec 17 04:06 log.47898782._004806.job.log.1
[2025-12-17 04:06:38] -rw------- 1 boinc boinc       357 Dec 17 04:06 output.list
[2025-12-17 04:06:38] -rw-r--r-- 1 boinc boinc       620 Dec 17 04:06 runtime_log
[2025-12-17 04:06:38] -rw------- 1 boinc boinc   1208320 Dec 17 04:06 result.tar.gz
[2025-12-17 04:06:38] -rw-r--r-- 1 boinc boinc      8902 Dec 17 04:06 runtime_log.err
[2025-12-17 04:06:38] -rw------- 1 boinc boinc       659 Dec 17 04:06 LR4LDmDNdp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWAVKDmpCGrlm.diag
[2025-12-17 04:06:38] -rw-r--r-- 1 boinc boinc     12690 Dec 17 04:06 stderr.txt
[2025-12-17 04:06:38] HITS file was successfully produced:
[2025-12-17 04:06:38] -rw------- 1 boinc boinc 194693280 Dec 17 04:05 shared/HITS.pool.root.1
[2025-12-17 04:06:38]  *** Contents of shared directory: ***
[2025-12-17 04:06:38] total 399508
[2025-12-17 04:06:38] -rw-r--r-- 2 boinc boinc 212572572 Dec 17 02:18 ATLAS.root_0
[2025-12-17 04:06:38] -rw-r--r-- 2 boinc boinc    592383 Dec 17 02:18 input.tar.gz
[2025-12-17 04:06:38] -rw-r--r-- 2 boinc boinc     15847 Dec 17 02:18 start_atlas.sh
[2025-12-17 04:06:38] -rw------- 1 boinc boinc 194693280 Dec 17 04:05 HITS.pool.root.1
[2025-12-17 04:06:38] -rw------- 1 boinc boinc   1208320 Dec 17 04:06 result.tar.gz
04:06:39 (822452): run_atlas exited; CPU time 18605.779644
04:06:39 (822452): called boinc_finish(0)

</stderr_txt>
]]>

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