Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:12:02 (3828421): wrapper (7.7.26015): starting
13:12:02 (3828421): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 13:12:02] Arguments: --nthreads 8
[2025-12-16 13:12:02] Threads: 8
[2025-12-16 13:12:02] Checking for CVMFS
[2025-12-16 13:12:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 13:12:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 13:12:03] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 13:12:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 13:12:05] 2.13.3.0 5210 19855 354764 154081 3 817 24776651 32935937 22567 16776704 0 46289682 99.335 73683323 31206 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-16 13:12:05] CVMFS is ok
[2025-12-16 13:12:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 13:12:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 13:12:05] Further information can be found at the LHC@home message board.
[2025-12-16 13:12:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 13:12:05] Checking for apptainer binary...
[2025-12-16 13:12:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 13:12:05] Running /usr/bin/apptainer --version
[2025-12-16 13:12:05] apptainer version 1.4.5-2.el9
[2025-12-16 13:12:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 13:12:06] c6-1-26-2.aglt2.org
[2025-12-16 13:12:06] apptainer works
[2025-12-16 13:12:06] Set ATHENA_PROC_NUMBER=8
[2025-12-16 13:12:06] Set ATHENA_CORE_NUMBER=8
[2025-12-16 13:12:06] Starting ATLAS job with PandaID=6930760159
[2025-12-16 13:12:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 19:36:24]  *** The last 200 lines of the pilot log: ***
[2025-12-16 19:36:24] 2025-12-17 00:35:44,206 | INFO     | time since job start (22948s) is within the limit (174528.0s)
[2025-12-16 19:36:24] 2025-12-17 00:35:45,366 | INFO     | monitor loop #1371: job 0:6930760159 is in state 'finished'
[2025-12-16 19:36:24] 2025-12-17 00:35:45,367 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 19:36:24] 2025-12-17 00:35:46,213 | INFO     | time since job start (22950s) is within the limit (174528.0s)
[2025-12-16 19:36:24] 2025-12-17 00:35:47,872 | INFO     | monitor loop #1372: job 0:6930760159 is in state 'finished'
[2025-12-16 19:36:24] 2025-12-17 00:35:47,876 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 19:36:24] 2025-12-17 00:35:48,222 | INFO     | time since job start (22952s) is within the limit (174528.0s)
[2025-12-16 19:36:24] 2025-12-17 00:35:48,423 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-16 19:36:24] 2025-12-17 00:35:48,435 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2949.2790714285725
[2025-12-16 19:36:24] 2025-12-17 00:35:48,471 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6930760159/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 19:36:24] 2025-12-17 00:35:48,472 | INFO     | extracted standard info from prmon json
[2025-12-16 19:36:24] 2025-12-17 00:35:48,472 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 19:36:24] 2025-12-17 00:35:48,472 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 19:36:24] 2025-12-17 00:35:48,477 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 19:36:24] 2025-12-17 00:35:48,477 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 19:36:24] 2025-12-17 00:35:48,502 | INFO     | fitting pss+swap vs Time
[2025-12-16 19:36:24] 2025-12-17 00:35:48,503 | INFO     | sum of square deviations: 16091755243.007986
[2025-12-16 19:36:24] 2025-12-17 00:35:48,524 | INFO     | sum of deviations: 95214436197.73454
[2025-12-16 19:36:24] 2025-12-17 00:35:48,524 | INFO     | mean x: 1765920316.525469
[2025-12-16 19:36:24] 2025-12-17 00:35:48,524 | INFO     | mean y: 2101679.659517426
[2025-12-16 19:36:24] 2025-12-17 00:35:48,524 | INFO     | intersect: -10446796204.31472
[2025-12-16 19:36:24] 2025-12-17 00:35:48,525 | INFO     | chi2: 5.336707337232178
[2025-12-16 19:36:24] 2025-12-17 00:35:48,526 | INFO     | sum of square deviations: 15453283369.728174
[2025-12-16 19:36:24] 2025-12-17 00:35:48,535 | INFO     | sum of deviations: 134701763564.40215
[2025-12-16 19:36:24] 2025-12-17 00:35:48,542 | INFO     | mean x: 1765920164.027174
[2025-12-16 19:36:24] 2025-12-17 00:35:48,542 | INFO     | mean y: 2111037.059782609
[2025-12-16 19:36:24] 2025-12-17 00:35:48,542 | INFO     | intersect: -15390899931.364779
[2025-12-16 19:36:24] 2025-12-17 00:35:48,543 | INFO     | chi2: 4.013361556275775
[2025-12-16 19:36:24] 2025-12-17 00:35:48,543 | INFO     | current chi2=4.013361556275775 (change=24.797046143488554 %)
[2025-12-16 19:36:24] 2025-12-17 00:35:48,543 | INFO     | right removable region: 367
[2025-12-16 19:36:24] 2025-12-17 00:35:48,544 | INFO     | sum of square deviations: 15453209071.608622
[2025-12-16 19:36:24] 2025-12-17 00:35:48,556 | INFO     | sum of deviations: 13008432305.43478
[2025-12-16 19:36:24] 2025-12-17 00:35:48,556 | INFO     | mean x: 1765920469.0326087
[2025-12-16 19:36:24] 2025-12-17 00:35:48,557 | INFO     | mean y: 2121273.1304347827
[2025-12-16 19:36:24] 2025-12-17 00:35:48,557 | INFO     | intersect: -1484421539.5464044
[2025-12-16 19:36:24] 2025-12-17 00:35:48,566 | INFO     | chi2: 2.6964217524854743
[2025-12-16 19:36:24] 2025-12-17 00:35:48,567 | INFO     | current chi2=2.6964217524854743 (change=49.47405615305968 %)
[2025-12-16 19:36:24] 2025-12-17 00:35:48,568 | INFO     | sum of square deviations: 14831824518.319525
[2025-12-16 19:36:24] 2025-12-17 00:35:48,581 | INFO     | sum of deviations: -22678988912.344345
[2025-12-16 19:36:24] 2025-12-17 00:35:48,581 | INFO     | mean x: 1765920621.5344353
[2025-12-16 19:36:24] 2025-12-17 00:35:48,582 | INFO     | mean y: 2130019.0275482093
[2025-12-16 19:36:24] 2025-12-17 00:35:48,582 | INFO     | intersect: 2702357098.062418
[2025-12-16 19:36:24] 2025-12-17 00:35:48,582 | INFO     | chi2: 2.2073469398337204
[2025-12-16 19:36:24] 2025-12-17 00:35:48,583 | INFO     | current chi2=2.2073469398337204 (change=18.137919715301976 %)
[2025-12-16 19:36:24] 2025-12-17 00:35:48,583 | INFO     | left removable region: 20
[2025-12-16 19:36:24] 2025-12-17 00:35:48,583 | INFO     | sum of square deviations: 12955883088.541845
[2025-12-16 19:36:24] 2025-12-17 00:35:48,596 | INFO     | sum of deviations: -4604333959.314149
[2025-12-16 19:36:24] 2025-12-17 00:35:48,605 | INFO     | mean x: 1765920743.5244956
[2025-12-16 19:36:24] 2025-12-17 00:35:48,605 | INFO     | mean y: 2146112.9193083574
[2025-12-16 19:36:24] 2025-12-17 00:35:48,605 | INFO     | intersect: 629728871.5240124
[2025-12-16 19:36:24] 2025-12-17 00:35:48,606 | INFO     | chi2: 0.6582982244323651
[2025-12-16 19:36:24] 2025-12-17 00:35:48,606 | INFO     | current memory leak: -0.36 B/s (using 347 data points, chi2=0.66)
[2025-12-16 19:36:24] 2025-12-17 00:35:48,607 | INFO     | could have reported an average CPU frequency of 3030 MHz (16 samples)
[2025-12-16 19:36:24] 2025-12-17 00:35:48,607 | INFO     | ..............................
[2025-12-16 19:36:24] 2025-12-17 00:35:48,608 | INFO     | . Timing measurements:
[2025-12-16 19:36:24] 2025-12-17 00:35:48,608 | INFO     | . get job = 0 s
[2025-12-16 19:36:24] 2025-12-17 00:35:48,608 | INFO     | . initial setup = 4 s
[2025-12-16 19:36:24] 2025-12-17 00:35:48,608 | INFO     | . payload setup = 49 s
[2025-12-16 19:36:24] 2025-12-17 00:35:48,608 | INFO     | . stage-in = 0 s
[2025-12-16 19:36:24] 2025-12-17 00:35:48,608 | INFO     | . payload execution = 22753 s
[2025-12-16 19:36:24] 2025-12-17 00:35:48,608 | INFO     | . stage-out = 6 s
[2025-12-16 19:36:24] 2025-12-17 00:35:48,608 | INFO     | . log creation = 2 s
[2025-12-16 19:36:24] 2025-12-17 00:35:48,617 | INFO     | ..............................
[2025-12-16 19:36:24] 2025-12-17 00:35:48,973 | INFO     | 
[2025-12-16 19:36:24] 2025-12-17 00:35:48,973 | INFO     | job summary report
[2025-12-16 19:36:24] 2025-12-17 00:35:48,973 | INFO     | --------------------------------------------------
[2025-12-16 19:36:24] 2025-12-17 00:35:48,973 | INFO     | PanDA job id: 6930760159
[2025-12-16 19:36:24] 2025-12-17 00:35:48,973 | INFO     | task id: 47886831
[2025-12-16 19:36:24] 2025-12-17 00:35:48,973 | INFO     | errors: (none)
[2025-12-16 19:36:24] 2025-12-17 00:35:48,974 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 19:36:24] 2025-12-17 00:35:48,974 | INFO     | pilot state: finished 
[2025-12-16 19:36:24] 2025-12-17 00:35:48,974 | INFO     | transexitcode: 0
[2025-12-16 19:36:24] 2025-12-17 00:35:48,974 | INFO     | exeerrorcode: 0
[2025-12-16 19:36:24] 2025-12-17 00:35:48,974 | INFO     | exeerrordiag: 
[2025-12-16 19:36:24] 2025-12-17 00:35:48,974 | INFO     | exitcode: 0
[2025-12-16 19:36:24] 2025-12-17 00:35:48,974 | INFO     | exitmsg: OK
[2025-12-16 19:36:24] 2025-12-17 00:35:48,974 | INFO     | cpuconsumptiontime: 42644 s
[2025-12-16 19:36:24] 2025-12-17 00:35:48,974 | INFO     | nevents: 400
[2025-12-16 19:36:24] 2025-12-17 00:35:48,974 | INFO     | neventsw: 0
[2025-12-16 19:36:24] 2025-12-17 00:35:48,974 | INFO     | pid: 3844354
[2025-12-16 19:36:24] 2025-12-17 00:35:48,974 | INFO     | pgrp: 3844354
[2025-12-16 19:36:24] 2025-12-17 00:35:48,974 | INFO     | corecount: 8
[2025-12-16 19:36:24] 2025-12-17 00:35:48,974 | INFO     | event service: False
[2025-12-16 19:36:24] 2025-12-17 00:35:48,974 | INFO     | sizes: {0: 2283822, 1: 2284021, 2: 2284021, 13: 2284049, 25: 2284105, 36: 2284133, 40: 2284551, 47: 2284579, 22807: 2318923, 22808: 2318922, 22815: 2327976, 22817:
[2025-12-16 19:36:24] 2025-12-17 00:35:48,974 | INFO     | --------------------------------------------------
[2025-12-16 19:36:24] 2025-12-17 00:35:48,975 | INFO     | 
[2025-12-16 19:36:24] 2025-12-17 00:35:48,975 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-16 19:36:24] 2025-12-17 00:35:49,043 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 19:36:24] 2025-12-17 00:35:49,043 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 19:36:24] 2025-12-17 00:35:49,043 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 19:36:24] 2025-12-17 00:35:49,043 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 19:36:24] 2025-12-17 00:35:49,043 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 19:36:24] 2025-12-17 00:35:49,043 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 19:36:24] 2025-12-17 00:35:49,044 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 19:36:24] 2025-12-17 00:35:49,044 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 19:36:24] 2025-12-17 00:35:49,044 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 19:36:24] 2025-12-17 00:35:49,044 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 19:36:24] 2025-12-17 00:35:49,044 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 19:36:24] 2025-12-17 00:35:49,044 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 19:36:24] 2025-12-17 00:35:49,044 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 19:36:24] 2025-12-17 00:35:49,044 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 19:36:24] 2025-12-17 00:35:49,044 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 19:36:24] 2025-12-17 00:35:49,044 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 19:36:24] 2025-12-17 00:35:49,044 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 19:36:24] 2025-12-17 00:35:49,044 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 19:36:24] 2025-12-17 00:35:49,044 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 19:36:24] 2025-12-17 00:35:49,044 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 19:36:24] 2025-12-17 00:35:49,045 | INFO     | job 6930760159 has completed (purged errors)
[2025-12-16 19:36:24] 2025-12-17 00:35:49,045 | INFO     | overall cleanup function is called
[2025-12-16 19:36:24] 2025-12-17 00:35:50,067 | INFO     | --- collectZombieJob: --- 10, [3844354]
[2025-12-16 19:36:24] 2025-12-17 00:35:50,068 | INFO     | zombie collector waiting for pid 3844354
[2025-12-16 19:36:24] 2025-12-17 00:35:50,068 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 19:36:24] 2025-12-17 00:35:50,068 | INFO     | collected zombie processes
[2025-12-16 19:36:24] 2025-12-17 00:35:50,068 | INFO     | will attempt to kill all subprocesses of pid=3844354
[2025-12-16 19:36:24] 2025-12-17 00:35:51,295 | INFO     | process IDs to be killed: [3844354] (in reverse order)
[2025-12-16 19:36:24] 2025-12-17 00:35:51,631 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 19:36:24] 2025-12-17 00:35:51,632 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 19:36:24] 2025-12-17 00:35:51,689 | INFO     | did not find any defunct processes belonging to 3844354
[2025-12-16 19:36:24] 2025-12-17 00:35:51,751 | INFO     | did not find any defunct processes belonging to 3844354
[2025-12-16 19:36:24] 2025-12-17 00:35:51,752 | INFO     | ready for new job
[2025-12-16 19:36:24] 2025-12-17 00:35:51,752 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 19:36:24] 2025-12-17 00:35:51,758 | INFO     | ***************************************
[2025-12-16 19:36:24] 2025-12-17 00:35:51,759 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 19:36:24] 2025-12-17 00:35:51,759 | INFO     | ***************************************
[2025-12-16 19:36:24] 2025-12-17 00:35:51,759 | INFO     | 
[2025-12-16 19:36:24] 2025-12-17 00:35:51,790 | INFO     | architecture information:
[2025-12-16 19:36:24] 2025-12-17 00:35:51,795 | INFO     | executing command: cat /etc/os-release
[2025-12-16 19:36:24] 2025-12-17 00:35:51,848 | INFO     | cat /etc/os-release:
[2025-12-16 19:36:24] NAME="CentOS Linux"
[2025-12-16 19:36:24] VERSION="7 (Core)"
[2025-12-16 19:36:24] ID="centos"
[2025-12-16 19:36:24] ID_LIKE="rhel fedora"
[2025-12-16 19:36:24] VERSION_ID="7"
[2025-12-16 19:36:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 19:36:24] ANSI_COLOR="0;31"
[2025-12-16 19:36:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 19:36:24] HOME_URL="https://www.centos.org/"
[2025-12-16 19:36:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 19:36:24] 
[2025-12-16 19:36:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 19:36:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 19:36:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 19:36:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 19:36:24] 
[2025-12-16 19:36:24] 2025-12-17 00:35:51,849 | INFO     | ***************************************
[2025-12-16 19:36:24] 2025-12-17 00:35:52,353 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-16 19:36:24] 2025-12-17 00:35:52,488 | INFO     | sufficient remaining disk space (75916902400 B)
[2025-12-16 19:36:24] 2025-12-17 00:35:52,489 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 19:36:24] 2025-12-17 00:35:52,489 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 19:36:24] 2025-12-17 00:35:52,489 | INFO     | update_server=False
[2025-12-16 19:36:24] 2025-12-17 00:35:52,490 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 19:36:24] 2025-12-17 00:35:52,491 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 19:36:24] 2025-12-17 00:35:52,494 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 19:36:24] 2025-12-17 00:35:52,926 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-16 19:36:24] 2025-12-17 00:35:52,952 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-16 19:36:24] 2025-12-17 00:35:52,952 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 19:36:24] 2025-12-17 00:35:52,952 | INFO     | will abort loop
[2025-12-16 19:36:24] 2025-12-17 00:35:53,306 | INFO     | all payload control threads have been joined
[2025-12-16 19:36:24] 2025-12-17 00:35:53,430 | INFO     | all data control threads have been joined
[2025-12-16 19:36:24] 2025-12-17 00:35:53,496 | INFO     | [job] retrieve thread has finished
[2025-12-16 19:36:24] 2025-12-17 00:35:53,513 | INFO     | all job control threads have been joined
[2025-12-16 19:36:24] 2025-12-17 00:35:53,867 | INFO     | [data] copytool_in thread has finished
[2025-12-16 19:36:24] 2025-12-17 00:35:53,867 | INFO     | [job] validate thread has finished
[2025-12-16 19:36:24] 2025-12-17 00:35:53,871 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 19:36:24] 2025-12-17 00:35:53,871 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 19:36:24] 2025-12-17 00:35:53,881 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 19:36:24] 2025-12-17 00:35:53,977 | INFO     | [job] job monitor thread has finished
[2025-12-16 19:36:24] 2025-12-17 00:35:53,996 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 19:36:24] 2025-12-17 00:35:54,313 | INFO     | [payload] control thread has finished
[2025-12-16 19:36:24] 2025-12-17 00:35:54,436 | INFO     | [data] control thread has finished
[2025-12-16 19:36:24] 2025-12-17 00:35:54,492 | INFO     | [payload] validate_post thread has finished
[2025-12-16 19:36:24] 2025-12-17 00:35:54,502 | INFO     | [data] copytool_out thread has finished
[2025-12-16 19:36:24] 2025-12-17 00:35:54,519 | INFO     | [job] control thread has finished
[2025-12-16 19:36:24] 2025-12-17 00:35:54,681 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 19:36:24] 2025-12-17 00:35:54,746 | INFO     | [payload] failed_post thread has finished
[2025-12-16 19:36:24] 2025-12-17 00:35:55,003 | INFO     | [job] queue monitor thread has finished
[2025-12-16 19:36:24] 2025-12-17 00:35:56,552 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 19:36:24] 2025-12-17 00:35:56,705 | INFO     | [monitor] cgroup control has ended
[2025-12-16 19:36:24] 2025-12-17 00:35:56,916 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140171092653888)>', '<ExcThread(monitor, started 140170577815296)>']
[2025-12-16 19:36:24] 2025-12-17 00:36:01,962 | INFO     | all workflow threads have been joined
[2025-12-16 19:36:24] 2025-12-17 00:36:01,963 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 19:36:24] 2025-12-17 00:36:01,963 | INFO     | traces error code: 0
[2025-12-16 19:36:24] 2025-12-17 00:36:01,963 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 19:36:24] 2025-12-17 00:36:22,402 | INFO     | PID=3833436 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 19:36:24] 2025-12-17 00:36:22,407 | INFO     | .. there are 23 such processes running
[2025-12-16 19:36:24] 2025-12-17 00:36:22,407 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 19:36:24] 2025-12-17 00:36:22,407 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 19:36:24] 2025-12-17 00:36:22,407 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 19:36:24] 2025-12-17 00:36:22,407 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 19:36:24] 2025-12-17 00:36:22,407 | INFO     | [monitor] control thread has ended
[2025-12-16 19:36:24] 2025-12-17 00:36:22,773 [wrapper] ==== pilot stdout END ====
[2025-12-16 19:36:24] 2025-12-17 00:36:22,802 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 19:36:24] 2025-12-17 00:36:22,828 [wrapper] pilotpid: 3833436
[2025-12-16 19:36:24] 2025-12-17 00:36:22,864 [wrapper] Pilot exit status: 0
[2025-12-16 19:36:24] 2025-12-17 00:36:23,058 [wrapper] pandaids: 6930760159
[2025-12-16 19:36:24] 2025-12-17 00:36:23,459 [wrapper] cleanup supervisor_pilot  919721 3833437
[2025-12-16 19:36:24] 2025-12-17 00:36:23,502 [wrapper] Test setup, not cleaning
[2025-12-16 19:36:24] 2025-12-17 00:36:23,566 [wrapper] apfmon messages muted
[2025-12-16 19:36:24] 2025-12-17 00:36:23,611 [wrapper] ==== wrapper stdout END ====
[2025-12-16 19:36:24] 2025-12-17 00:36:23,666 [wrapper] ==== wrapper stderr END ====
[2025-12-16 19:36:24]  *** Error codes and diagnostics ***
[2025-12-16 19:36:24]     "exeErrorCode": 0,
[2025-12-16 19:36:24]     "exeErrorDiag": "",
[2025-12-16 19:36:24]     "pilotErrorCode": 0,
[2025-12-16 19:36:24]     "pilotErrorDiag": "",
[2025-12-16 19:36:24]  *** Listing of results directory ***
[2025-12-16 19:36:24] total 344916
[2025-12-16 19:36:24] -rw-r--r--. 1 boincer umatlas    579449 Dec 16 01:04 pilot3.tar.gz
[2025-12-16 19:36:24] -rw-r--r--. 1 boincer umatlas      5112 Dec 16 01:05 queuedata.json
[2025-12-16 19:36:24] -rwx------. 1 boincer umatlas     36322 Dec 16 01:05 runpilot2-wrapper.sh
[2025-12-16 19:36:24] -rw-r--r--. 1 boincer umatlas       100 Dec 16 13:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 19:36:24] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 16 13:12 run_atlas
[2025-12-16 19:36:24] -rw-r--r--. 1 boincer umatlas       105 Dec 16 13:12 job.xml
[2025-12-16 19:36:24] -rw-r--r--. 2 boincer umatlas 193070592 Dec 16 13:12 EVNT.47886829._000490.pool.root.1
[2025-12-16 19:36:24] -rw-r--r--. 2 boincer umatlas     15847 Dec 16 13:12 start_atlas.sh
[2025-12-16 19:36:24] drwxrwx--x. 2 boincer umatlas      4096 Dec 16 13:12 shared
[2025-12-16 19:36:24] -rw-r--r--. 2 boincer umatlas    592410 Dec 16 13:12 input.tar.gz
[2025-12-16 19:36:24] -rw-r--r--. 1 boincer umatlas         0 Dec 16 13:12 boinc_lockfile
[2025-12-16 19:36:24] -rw-r--r--. 1 boincer umatlas      2539 Dec 16 13:12 pandaJob.out
[2025-12-16 19:36:24] -rw-------. 1 boincer umatlas        57 Dec 16 13:12 setup.sh.local
[2025-12-16 19:36:24] -rw-------. 1 boincer umatlas    987401 Dec 16 13:13 agis_schedconf.cvmfs.json
[2025-12-16 19:36:24] drwx------. 5 boincer umatlas      4096 Dec 16 13:13 pilot3
[2025-12-16 19:36:24] -rw-r--r--. 1 boincer umatlas      6844 Dec 16 19:31 init_data.xml
[2025-12-16 19:36:24] -rw-------. 1 boincer umatlas 149443673 Dec 16 19:32 HITS.47886831._012180.pool.root.1
[2025-12-16 19:36:24] -rw-r--r--. 1 boincer umatlas       531 Dec 16 19:33 boinc_task_state.xml
[2025-12-16 19:36:24] -rw-------. 1 boincer umatlas      1040 Dec 16 19:34 memory_monitor_summary.json
[2025-12-16 19:36:24] -rw-------. 1 boincer umatlas   1516240 Dec 16 19:34 agis_ddmendpoints.agis.ALL.json
[2025-12-16 19:36:24] -rw-------. 1 boincer umatlas    567225 Dec 16 19:34 log.47886831._012180.job.log.tgz.1
[2025-12-16 19:36:24] -rw-------. 1 boincer umatlas        95 Dec 16 19:35 pilot_heartbeat.json
[2025-12-16 19:36:24] -rw-------. 1 boincer umatlas      7817 Dec 16 19:35 heartbeat.json
[2025-12-16 19:36:24] -rw-r--r--. 1 boincer umatlas        28 Dec 16 19:36 wrapper_checkpoint.txt
[2025-12-16 19:36:24] -rw-------. 1 boincer umatlas       823 Dec 16 19:36 pilotlog.txt
[2025-12-16 19:36:24] -rw-------. 1 boincer umatlas   2815322 Dec 16 19:36 log.47886831._012180.job.log.1
[2025-12-16 19:36:24] -rw-------. 1 boincer umatlas       357 Dec 16 19:36 output.list
[2025-12-16 19:36:24] -rw-r--r--. 1 boincer umatlas       620 Dec 16 19:36 runtime_log
[2025-12-16 19:36:24] -rw-------. 1 boincer umatlas   3399680 Dec 16 19:36 result.tar.gz
[2025-12-16 19:36:24] -rw-r--r--. 1 boincer umatlas      9348 Dec 16 19:36 runtime_log.err
[2025-12-16 19:36:24] -rw-------. 1 boincer umatlas       658 Dec 16 19:36 EZvLDmjMdp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmm5UKDmvVe1Fo.diag
[2025-12-16 19:36:24] -rw-r--r--. 1 boincer umatlas      8192 Dec 16 19:36 boinc_mmap_file
[2025-12-16 19:36:24] -rw-r--r--. 1 boincer umatlas     21128 Dec 16 19:36 stderr.txt
[2025-12-16 19:36:24] HITS file was successfully produced:
[2025-12-16 19:36:24] -rw-------. 1 boincer umatlas 149443673 Dec 16 19:32 shared/HITS.pool.root.1
[2025-12-16 19:36:24]  *** Contents of shared directory: ***
[2025-12-16 19:36:24] total 338416
[2025-12-16 19:36:24] -rw-r--r--. 2 boincer umatlas 193070592 Dec 16 13:12 ATLAS.root_0
[2025-12-16 19:36:24] -rw-r--r--. 2 boincer umatlas     15847 Dec 16 13:12 start_atlas.sh
[2025-12-16 19:36:24] -rw-r--r--. 2 boincer umatlas    592410 Dec 16 13:12 input.tar.gz
[2025-12-16 19:36:24] -rw-------. 1 boincer umatlas 149443673 Dec 16 19:32 HITS.pool.root.1
[2025-12-16 19:36:24] -rw-------. 1 boincer umatlas   3399680 Dec 16 19:36 result.tar.gz
19:36:46 (3828421): run_atlas exited; CPU time 43382.611785
19:36:46 (3828421): called boinc_finish(0)

</stderr_txt>
]]>

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