Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:35:14 (662647): wrapper (7.7.26015): starting
07:35:14 (662647): wrapper: running run_atlas (--nthreads 4)
[2025-12-17 07:35:14] Arguments: --nthreads 4
[2025-12-17 07:35:14] Threads: 4
[2025-12-17 07:35:14] Checking for CVMFS
[2025-12-17 07:35:14] No cvmfs_config command found, will try listing directly
[2025-12-17 07:35:14] CVMFS is ok
[2025-12-17 07:35:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 07:35:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 07:35:14] Further information can be found at the LHC@home message board.
[2025-12-17 07:35:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 07:35:14] Checking for apptainer binary...
[2025-12-17 07:35:14] which: no apptainer in ((null))
[2025-12-17 07:35:14] apptainer is not installed, using version from CVMFS
[2025-12-17 07:35:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 07:35:14] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot104/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2025-12-17 07:35:14] apptainer works
[2025-12-17 07:35:14] Set ATHENA_PROC_NUMBER=4
[2025-12-17 07:35:14] Set ATHENA_CORE_NUMBER=4
[2025-12-17 07:35:14] Starting ATLAS job with PandaID=6931013848
[2025-12-17 07:35:14] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot104/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 10:20:51]  *** The last 200 lines of the pilot log: ***
[2025-12-17 10:20:51] 2025-12-17 09:20:00,351 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2640.8219687500005
[2025-12-17 10:20:51] 2025-12-17 09:20:00,377 | INFO     | using path: /scratch/boinc/var/slot104/slots/0/PanDA_Pilot-6931013848/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 10:20:51] 2025-12-17 09:20:00,377 | INFO     | extracted standard info from prmon json
[2025-12-17 10:20:51] 2025-12-17 09:20:00,378 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 10:20:51] 2025-12-17 09:20:00,378 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 10:20:51] 2025-12-17 09:20:00,378 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 10:20:51] 2025-12-17 09:20:00,378 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 10:20:51] 2025-12-17 09:20:00,382 | INFO     | fitting pss+swap vs Time
[2025-12-17 10:20:51] 2025-12-17 09:20:00,382 | INFO     | sum of square deviations: 1318277740.5
[2025-12-17 10:20:51] 2025-12-17 09:20:00,383 | INFO     | sum of deviations: -1437826394.499999
[2025-12-17 10:20:51] 2025-12-17 09:20:00,383 | INFO     | mean x: 1765958273.5
[2025-12-17 10:20:51] 2025-12-17 09:20:00,383 | INFO     | mean y: 2305277.2407407407
[2025-12-17 10:20:51] 2025-12-17 09:20:00,383 | INFO     | intersect: 1928410330.232757
[2025-12-17 10:20:51] 2025-12-17 09:20:00,384 | INFO     | chi2: 1.9436981573047605
[2025-12-17 10:20:51] 2025-12-17 09:20:00,384 | INFO     | sum of square deviations: 1199940638.0
[2025-12-17 10:20:51] 2025-12-17 09:20:00,385 | INFO     | sum of deviations: 7694546100.0
[2025-12-17 10:20:51] 2025-12-17 09:20:00,385 | INFO     | mean x: 1765958121.0
[2025-12-17 10:20:51] 2025-12-17 09:20:00,385 | INFO     | mean y: 2316749.025477707
[2025-12-17 10:20:51] 2025-12-17 09:20:00,385 | INFO     | intersect: -11321781912.515041
[2025-12-17 10:20:51] 2025-12-17 09:20:00,386 | INFO     | chi2: 1.281773900836288
[2025-12-17 10:20:51] 2025-12-17 09:20:00,386 | INFO     | current chi2=1.281773900836288 (change=34.05488933458337 %)
[2025-12-17 10:20:51] 2025-12-17 09:20:00,386 | INFO     | sum of square deviations: 1088905998.0
[2025-12-17 10:20:51] 2025-12-17 09:20:00,387 | INFO     | sum of deviations: 7439137880.000002
[2025-12-17 10:20:51] 2025-12-17 09:20:00,387 | INFO     | mean x: 1765957968.5
[2025-12-17 10:20:51] 2025-12-17 09:20:00,387 | INFO     | mean y: 2316398.1184210526
[2025-12-17 10:20:51] 2025-12-17 09:20:00,387 | INFO     | intersect: -12062273972.478657
[2025-12-17 10:20:51] 2025-12-17 09:20:00,388 | INFO     | chi2: 1.2827941355364356
[2025-12-17 10:20:51] 2025-12-17 09:20:00,388 | INFO     | current chi2=1.2827941355364356 (change=-0.0795955276887688 %)
[2025-12-17 10:20:51] 2025-12-17 09:20:00,388 | INFO     | right removable region: 151
[2025-12-17 10:20:51] 2025-12-17 09:20:00,388 | INFO     | sum of square deviations: 1199940638.0
[2025-12-17 10:20:51] 2025-12-17 09:20:00,389 | INFO     | sum of deviations: -18689431564.0
[2025-12-17 10:20:51] 2025-12-17 09:20:00,389 | INFO     | mean x: 1765958426.0
[2025-12-17 10:20:51] 2025-12-17 09:20:00,389 | INFO     | mean y: 2327068.159235669
[2025-12-17 10:20:51] 2025-12-17 09:20:00,389 | INFO     | intersect: 27507653667.15401
[2025-12-17 10:20:51] 2025-12-17 09:20:00,390 | INFO     | chi2: 0.7217017652904804
[2025-12-17 10:20:51] 2025-12-17 09:20:00,390 | INFO     | current chi2=0.7217017652904804 (change=62.86965840975884 %)
[2025-12-17 10:20:51] 2025-12-17 09:20:00,390 | INFO     | sum of square deviations: 1088905998.0
[2025-12-17 10:20:51] 2025-12-17 09:20:00,391 | INFO     | sum of deviations: -15066536979.5
[2025-12-17 10:20:51] 2025-12-17 09:20:00,391 | INFO     | mean x: 1765958578.5
[2025-12-17 10:20:51] 2025-12-17 09:20:00,391 | INFO     | mean y: 2322094.914473684
[2025-12-17 10:20:51] 2025-12-17 09:20:00,391 | INFO     | intersect: 24436828173.588406
[2025-12-17 10:20:51] 2025-12-17 09:20:00,391 | INFO     | chi2: 0.7121562171081357
[2025-12-17 10:20:51] 2025-12-17 09:20:00,392 | INFO     | current chi2=0.7121562171081357 (change=1.3226444275777312 %)
[2025-12-17 10:20:51] 2025-12-17 09:20:00,392 | INFO     | left removable region: 20
[2025-12-17 10:20:51] 2025-12-17 09:20:00,392 | INFO     | sum of square deviations: 697054930.0
[2025-12-17 10:20:51] 2025-12-17 09:20:00,393 | INFO     | sum of deviations: -1209838864.0
[2025-12-17 10:20:51] 2025-12-17 09:20:00,393 | INFO     | mean x: 1765958548.0
[2025-12-17 10:20:51] 2025-12-17 09:20:00,393 | INFO     | mean y: 2326897.6946564885
[2025-12-17 10:20:51] 2025-12-17 09:20:00,393 | INFO     | intersect: 3067401386.9941
[2025-12-17 10:20:51] 2025-12-17 09:20:00,393 | INFO     | chi2: 0.011676064202014308
[2025-12-17 10:20:51] 2025-12-17 09:20:00,393 | INFO     | current memory leak: -1.74 B/s (using 131 data points, chi2=0.01)
[2025-12-17 10:20:51] 2025-12-17 09:20:00,394 | INFO     | could have reported an average CPU frequency of 2697 MHz (9 samples)
[2025-12-17 10:20:51] 2025-12-17 09:20:00,394 | INFO     | ..............................
[2025-12-17 10:20:51] 2025-12-17 09:20:00,394 | INFO     | . Timing measurements:
[2025-12-17 10:20:51] 2025-12-17 09:20:00,394 | INFO     | . get job = 0 s
[2025-12-17 10:20:51] 2025-12-17 09:20:00,394 | INFO     | . initial setup = 1 s
[2025-12-17 10:20:51] 2025-12-17 09:20:00,394 | INFO     | . payload setup = 8 s
[2025-12-17 10:20:51] 2025-12-17 09:20:00,394 | INFO     | . stage-in = 0 s
[2025-12-17 10:20:51] 2025-12-17 09:20:00,394 | INFO     | . payload execution = 9833 s
[2025-12-17 10:20:51] 2025-12-17 09:20:00,395 | INFO     | . stage-out = 0 s
[2025-12-17 10:20:51] 2025-12-17 09:20:00,395 | INFO     | . log creation = 0 s
[2025-12-17 10:20:51] 2025-12-17 09:20:00,395 | INFO     | ..............................
[2025-12-17 10:20:51] 2025-12-17 09:20:00,496 | INFO     | 
[2025-12-17 10:20:51] 2025-12-17 09:20:00,497 | INFO     | job summary report
[2025-12-17 10:20:51] 2025-12-17 09:20:00,497 | INFO     | --------------------------------------------------
[2025-12-17 10:20:51] 2025-12-17 09:20:00,497 | INFO     | PanDA job id: 6931013848
[2025-12-17 10:20:51] 2025-12-17 09:20:00,497 | INFO     | task id: 47886831
[2025-12-17 10:20:51] 2025-12-17 09:20:00,497 | INFO     | errors: (none)
[2025-12-17 10:20:51] 2025-12-17 09:20:00,497 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 10:20:51] 2025-12-17 09:20:00,497 | INFO     | pilot state: finished 
[2025-12-17 10:20:51] 2025-12-17 09:20:00,497 | INFO     | transexitcode: 0
[2025-12-17 10:20:51] 2025-12-17 09:20:00,497 | INFO     | exeerrorcode: 0
[2025-12-17 10:20:51] 2025-12-17 09:20:00,497 | INFO     | exeerrordiag: 
[2025-12-17 10:20:51] 2025-12-17 09:20:00,497 | INFO     | exitcode: 0
[2025-12-17 10:20:51] 2025-12-17 09:20:00,498 | INFO     | exitmsg: OK
[2025-12-17 10:20:51] 2025-12-17 09:20:00,498 | INFO     | cpuconsumptiontime: 37620 s
[2025-12-17 10:20:51] 2025-12-17 09:20:00,498 | INFO     | nevents: 400
[2025-12-17 10:20:51] 2025-12-17 09:20:00,498 | INFO     | neventsw: 0
[2025-12-17 10:20:51] 2025-12-17 09:20:00,498 | INFO     | pid: 674075
[2025-12-17 10:20:51] 2025-12-17 09:20:00,498 | INFO     | pgrp: 674075
[2025-12-17 10:20:51] 2025-12-17 09:20:00,498 | INFO     | corecount: 4
[2025-12-17 10:20:51] 2025-12-17 09:20:00,498 | INFO     | event service: False
[2025-12-17 10:20:51] 2025-12-17 09:20:00,498 | INFO     | sizes: {0: 2284005, 7: 2284267, 11: 2284295, 9845: 2313338, 9847: 2322416, 9854: 2322618}
[2025-12-17 10:20:51] 2025-12-17 09:20:00,498 | INFO     | --------------------------------------------------
[2025-12-17 10:20:51] 2025-12-17 09:20:00,498 | INFO     | 
[2025-12-17 10:20:51] 2025-12-17 09:20:00,499 | INFO     | executing command: ls -lF /scratch/boinc/var/slot104/slots/0
[2025-12-17 10:20:51] 2025-12-17 09:20:00,531 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 10:20:51] 2025-12-17 09:20:00,532 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 10:20:51] 2025-12-17 09:20:00,532 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 10:20:51] 2025-12-17 09:20:00,532 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 10:20:51] 2025-12-17 09:20:00,532 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 10:20:51] 2025-12-17 09:20:00,532 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 10:20:51] 2025-12-17 09:20:00,533 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 10:20:51] 2025-12-17 09:20:00,533 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 10:20:51] 2025-12-17 09:20:00,533 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 10:20:51] 2025-12-17 09:20:00,533 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 10:20:51] 2025-12-17 09:20:00,533 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 10:20:51] 2025-12-17 09:20:00,533 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 10:20:51] 2025-12-17 09:20:00,533 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 10:20:51] 2025-12-17 09:20:00,533 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 10:20:51] 2025-12-17 09:20:00,534 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 10:20:51] 2025-12-17 09:20:00,534 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 10:20:51] 2025-12-17 09:20:00,534 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 10:20:51] 2025-12-17 09:20:00,534 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 10:20:51] 2025-12-17 09:20:00,534 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 10:20:51] 2025-12-17 09:20:00,534 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 10:20:51] 2025-12-17 09:20:00,534 | INFO     | job 6931013848 has completed (purged errors)
[2025-12-17 10:20:51] 2025-12-17 09:20:00,534 | INFO     | overall cleanup function is called
[2025-12-17 10:20:51] 2025-12-17 09:20:01,509 | INFO     | PID=666636 has CPU usage=17.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-17 10:20:51] 2025-12-17 09:20:01,510 | INFO     | .. there are 8 such processes running
[2025-12-17 10:20:51] 2025-12-17 09:20:01,543 | INFO     | --- collectZombieJob: --- 10, [674075]
[2025-12-17 10:20:51] 2025-12-17 09:20:01,543 | INFO     | zombie collector waiting for pid 674075
[2025-12-17 10:20:51] 2025-12-17 09:20:01,543 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 10:20:51] 2025-12-17 09:20:01,543 | INFO     | collected zombie processes
[2025-12-17 10:20:51] 2025-12-17 09:20:01,544 | INFO     | will attempt to kill all subprocesses of pid=674075
[2025-12-17 10:20:51] 2025-12-17 09:20:02,357 | INFO     | process IDs to be killed: [674075] (in reverse order)
[2025-12-17 10:20:51] 2025-12-17 09:20:02,596 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 10:20:51] 2025-12-17 09:20:02,597 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 10:20:51] 2025-12-17 09:20:02,629 | INFO     | did not find any defunct processes belonging to 674075
[2025-12-17 10:20:51] 2025-12-17 09:20:02,659 | INFO     | did not find any defunct processes belonging to 674075
[2025-12-17 10:20:51] 2025-12-17 09:20:02,659 | INFO     | ready for new job
[2025-12-17 10:20:51] 2025-12-17 09:20:02,659 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 10:20:51] 2025-12-17 09:20:02,662 | INFO     | ***************************************
[2025-12-17 10:20:51] 2025-12-17 09:20:02,662 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 10:20:51] 2025-12-17 09:20:02,662 | INFO     | ***************************************
[2025-12-17 10:20:51] 2025-12-17 09:20:02,662 | INFO     | 
[2025-12-17 10:20:51] 2025-12-17 09:20:02,669 | INFO     | architecture information:
[2025-12-17 10:20:51] 2025-12-17 09:20:02,669 | INFO     | executing command: cat /etc/os-release
[2025-12-17 10:20:51] 2025-12-17 09:20:02,686 | INFO     | cat /etc/os-release:
[2025-12-17 10:20:51] NAME="CentOS Linux"
[2025-12-17 10:20:51] VERSION="7 (Core)"
[2025-12-17 10:20:51] ID="centos"
[2025-12-17 10:20:51] ID_LIKE="rhel fedora"
[2025-12-17 10:20:51] VERSION_ID="7"
[2025-12-17 10:20:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 10:20:51] ANSI_COLOR="0;31"
[2025-12-17 10:20:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 10:20:51] HOME_URL="https://www.centos.org/"
[2025-12-17 10:20:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 10:20:51] 
[2025-12-17 10:20:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 10:20:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 10:20:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 10:20:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 10:20:51] 
[2025-12-17 10:20:51] 2025-12-17 09:20:02,687 | INFO     | ***************************************
[2025-12-17 10:20:51] 2025-12-17 09:20:03,190 | INFO     | executing command: df -mP /scratch/boinc/var/slot104/slots/0
[2025-12-17 10:20:51] 2025-12-17 09:20:03,219 | INFO     | sufficient remaining disk space (3271898955776 B)
[2025-12-17 10:20:51] 2025-12-17 09:20:03,220 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 10:20:51] 2025-12-17 09:20:03,220 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 10:20:51] 2025-12-17 09:20:03,220 | INFO     | update_server=False
[2025-12-17 10:20:51] 2025-12-17 09:20:03,220 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 10:20:51] 2025-12-17 09:20:03,354 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 10:20:51] 2025-12-17 09:20:03,354 | INFO     | aborting loop
[2025-12-17 10:20:51] 2025-12-17 09:20:03,411 | INFO     | all job control threads have been joined
[2025-12-17 10:20:51] 2025-12-17 09:20:03,462 | INFO     | all payload control threads have been joined
[2025-12-17 10:20:51] 2025-12-17 09:20:03,652 | INFO     | all data control threads have been joined
[2025-12-17 10:20:51] 2025-12-17 09:20:03,877 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 10:20:51] 2025-12-17 09:20:03,970 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 10:20:51] 2025-12-17 09:20:04,226 | INFO     | [job] retrieve thread has finished
[2025-12-17 10:20:51] 2025-12-17 09:20:04,353 | INFO     | [data] copytool_in thread has finished
[2025-12-17 10:20:51] 2025-12-17 09:20:04,359 | INFO     | [job] job monitor thread has finished
[2025-12-17 10:20:51] 2025-12-17 09:20:04,417 | INFO     | [job] control thread has finished
[2025-12-17 10:20:51] 2025-12-17 09:20:04,465 | INFO     | [job] validate thread has finished
[2025-12-17 10:20:51] 2025-12-17 09:20:04,466 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 10:20:51] 2025-12-17 09:20:04,467 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 10:20:51] 2025-12-17 09:20:04,467 | INFO     | [payload] control thread has finished
[2025-12-17 10:20:51] 2025-12-17 09:20:04,471 | INFO     | [payload] validate_post thread has finished
[2025-12-17 10:20:51] 2025-12-17 09:20:04,595 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 10:20:51] 2025-12-17 09:20:04,657 | INFO     | [data] control thread has finished
[2025-12-17 10:20:51] 2025-12-17 09:20:04,856 | INFO     | [payload] failed_post thread has finished
[2025-12-17 10:20:51] 2025-12-17 09:20:05,186 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 10:20:51] 2025-12-17 09:20:05,507 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 10:20:51] 2025-12-17 09:20:05,882 | INFO     | [data] copytool_out thread has finished
[2025-12-17 10:20:51] 2025-12-17 09:20:06,512 | INFO     | [job] queue monitor thread has finished
[2025-12-17 10:20:51] 2025-12-17 09:20:07,979 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 10:20:51] 2025-12-17 09:20:27,143 [wrapper] supervise_pilot (15 min periods counter: 12)
[2025-12-17 10:20:51] 2025-12-17 09:20:34,623 | INFO     | PID=666636 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-17 10:20:51] 2025-12-17 09:20:34,623 | INFO     | .. there are 8 such processes running
[2025-12-17 10:20:51] 2025-12-17 09:20:34,623 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 10:20:51] 2025-12-17 09:20:34,623 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 10:20:51] 2025-12-17 09:20:34,624 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 10:20:51] 2025-12-17 09:20:44,777 | INFO     | [monitor] cgroup control has ended
[2025-12-17 10:20:51] 2025-12-17 09:20:46,139 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22394425759552)>', '<ExcThread(monitor, started 22394190141184)>']
[2025-12-17 10:20:51] 2025-12-17 09:20:46,677 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 10:20:51] 2025-12-17 09:20:46,677 | INFO     | [monitor] control thread has ended
[2025-12-17 10:20:51] 2025-12-17 09:20:51,147 | INFO     | all workflow threads have been joined
[2025-12-17 10:20:51] 2025-12-17 09:20:51,147 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 10:20:51] 2025-12-17 09:20:51,148 | INFO     | traces error code: 0
[2025-12-17 10:20:51] 2025-12-17 09:20:51,148 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 10:20:51] 2025-12-17 09:20:51,301 [wrapper] ==== pilot stdout END ====
[2025-12-17 10:20:51] 2025-12-17 09:20:51,305 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 10:20:51] 2025-12-17 09:20:51,309 [wrapper] pilotpid: 666636
[2025-12-17 10:20:51] 2025-12-17 09:20:51,313 [wrapper] Pilot exit status: 0
[2025-12-17 10:20:51] 2025-12-17 09:20:51,328 [wrapper] pandaids: 6931013848
[2025-12-17 10:20:51] 2025-12-17 09:20:51,511 [wrapper] cleanup supervisor_pilot  991560 666637
[2025-12-17 10:20:51] 2025-12-17 09:20:51,515 [wrapper] Test setup, not cleaning
[2025-12-17 10:20:51] 2025-12-17 09:20:51,519 [wrapper] apfmon messages muted
[2025-12-17 10:20:51] 2025-12-17 09:20:51,523 [wrapper] ==== wrapper stdout END ====
[2025-12-17 10:20:51] 2025-12-17 09:20:51,527 [wrapper] ==== wrapper stderr END ====
[2025-12-17 10:20:51]  *** Error codes and diagnostics ***
[2025-12-17 10:20:51]     "exeErrorCode": 0,
[2025-12-17 10:20:51]     "exeErrorDiag": "",
[2025-12-17 10:20:51]     "pilotErrorCode": 0,
[2025-12-17 10:20:51]     "pilotErrorDiag": "",
[2025-12-17 10:20:51]  *** Listing of results directory ***
[2025-12-17 10:20:51] total 336888
[2025-12-17 10:20:51] -rwx------ 1 boinc boinc     36322 Dec 16 13:09 runpilot2-wrapper.sh
[2025-12-17 10:20:51] -rw-r--r-- 1 boinc boinc    579449 Dec 16 13:11 pilot3.tar.gz
[2025-12-17 10:20:51] -rw-r--r-- 1 boinc boinc      5112 Dec 16 13:12 queuedata.json
[2025-12-17 10:20:51] -rw-r--r-- 1 boinc boinc       100 Dec 17 07:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 10:20:51] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 07:35 run_atlas
[2025-12-17 10:20:51] -rw-r--r-- 1 boinc boinc       105 Dec 17 07:35 job.xml
[2025-12-17 10:20:51] -rw-r--r-- 2 boinc boinc 191431580 Dec 17 07:35 EVNT.47886829._000552.pool.root.1
[2025-12-17 10:20:51] -rw-r--r-- 1 boinc boinc      6691 Dec 17 07:35 init_data.xml
[2025-12-17 10:20:51] -rw-r--r-- 2 boinc boinc     15847 Dec 17 07:35 start_atlas.sh
[2025-12-17 10:20:51] drwxrwx--x 2 boinc boinc      4096 Dec 17 07:35 shared
[2025-12-17 10:20:51] -rw-r--r-- 2 boinc boinc    592419 Dec 17 07:35 input.tar.gz
[2025-12-17 10:20:51] -rw-r--r-- 1 boinc boinc         0 Dec 17 07:35 boinc_lockfile
[2025-12-17 10:20:51] -rw-r--r-- 1 boinc boinc      2539 Dec 17 07:35 pandaJob.out
[2025-12-17 10:20:51] -rw------- 1 boinc boinc    987409 Dec 17 07:35 agis_schedconf.cvmfs.json
[2025-12-17 10:20:51] -rw------- 1 boinc boinc   1516240 Dec 17 07:35 agis_ddmendpoints.agis.ALL.json
[2025-12-17 10:20:51] drwx------ 5 boinc boinc      4096 Dec 17 07:35 pilot3
[2025-12-17 10:20:51] -rw------- 1 boinc boinc 146165408 Dec 17 10:19 HITS.47886831._013495.pool.root.1
[2025-12-17 10:20:51] -rw-r--r-- 1 boinc boinc       528 Dec 17 10:19 boinc_task_state.xml
[2025-12-17 10:20:51] -rw------- 1 boinc boinc      1029 Dec 17 10:19 memory_monitor_summary.json
[2025-12-17 10:20:51] -rw------- 1 boinc boinc    346820 Dec 17 10:19 log.47886831._013495.job.log.tgz.1
[2025-12-17 10:20:51] -rw------- 1 boinc boinc      7785 Dec 17 10:20 heartbeat.json
[2025-12-17 10:20:51] -rw------- 1 boinc boinc        95 Dec 17 10:20 pilot_heartbeat.json
[2025-12-17 10:20:51] -rw-r--r-- 1 boinc boinc      8192 Dec 17 10:20 boinc_mmap_file
[2025-12-17 10:20:51] -rw-r--r-- 1 boinc boinc        26 Dec 17 10:20 wrapper_checkpoint.txt
[2025-12-17 10:20:51] -rw------- 1 boinc boinc      4834 Dec 17 10:20 pilotlog.txt
[2025-12-17 10:20:51] -rw------- 1 boinc boinc   1384442 Dec 17 10:20 log.47886831._013495.job.log.1
[2025-12-17 10:20:51] -rw------- 1 boinc boinc       357 Dec 17 10:20 output.list
[2025-12-17 10:20:51] -rw-r--r-- 1 boinc boinc       620 Dec 17 10:20 runtime_log
[2025-12-17 10:20:51] -rw------- 1 boinc boinc   1751040 Dec 17 10:20 result.tar.gz
[2025-12-17 10:20:51] -rw-r--r-- 1 boinc boinc      9222 Dec 17 10:20 runtime_log.err
[2025-12-17 10:20:51] -rw------- 1 boinc boinc       662 Dec 17 10:20 nvlNDmV3ip8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm03ZKDmSPhtym.diag
[2025-12-17 10:20:51] -rw-r--r-- 1 boinc boinc     20925 Dec 17 10:20 stderr.txt
[2025-12-17 10:20:51] HITS file was successfully produced:
[2025-12-17 10:20:51] -rw------- 1 boinc boinc 146165408 Dec 17 10:19 shared/HITS.pool.root.1
[2025-12-17 10:20:51]  *** Contents of shared directory: ***
[2025-12-17 10:20:51] total 332004
[2025-12-17 10:20:51] -rw-r--r-- 2 boinc boinc 191431580 Dec 17 07:35 ATLAS.root_0
[2025-12-17 10:20:51] -rw-r--r-- 2 boinc boinc     15847 Dec 17 07:35 start_atlas.sh
[2025-12-17 10:20:51] -rw-r--r-- 2 boinc boinc    592419 Dec 17 07:35 input.tar.gz
[2025-12-17 10:20:51] -rw------- 1 boinc boinc 146165408 Dec 17 10:19 HITS.pool.root.1
[2025-12-17 10:20:51] -rw------- 1 boinc boinc   1751040 Dec 17 10:20 result.tar.gz
10:20:53 (662647): run_atlas exited; CPU time 38278.012266
10:20:53 (662647): called boinc_finish(0)

</stderr_txt>
]]>

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