Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:58:04 (14322): wrapper (7.7.26015): starting
11:58:04 (14322): wrapper: running run_atlas (--nthreads 12)
[2025-12-16 11:58:04] Arguments: --nthreads 12
[2025-12-16 11:58:04] Threads: 12
[2025-12-16 11:58:04] Checking for CVMFS
[2025-12-16 11:58:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 11:58:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 11:58:05] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 11:58:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 11:58:05] 2.11.2.0 2984 316705 92732 154079 1 56 17738010 20275201 1 130560 1 141528392 99.974 17766373 14939 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-16 11:58:05] CVMFS is ok
[2025-12-16 11:58:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 11:58:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 11:58:05] Further information can be found at the LHC@home message board.
[2025-12-16 11:58:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 11:58:05] Checking for apptainer binary...
[2025-12-16 11:58:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 11:58:05] Running /usr/bin/apptainer --version
[2025-12-16 11:58:05] apptainer version 1.3.2-1.el7
[2025-12-16 11:58:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 11:58:06] c-205-26.aglt2.org
[2025-12-16 11:58:06] apptainer works
[2025-12-16 11:58:06] Set ATHENA_PROC_NUMBER=12
[2025-12-16 11:58:06] Set ATHENA_CORE_NUMBER=12
[2025-12-16 11:58:06] Starting ATLAS job with PandaID=6930227299
[2025-12-16 11:58:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 13:16:34]  *** The last 200 lines of the pilot log: ***
[2025-12-16 13:16:34]  protocol_id=None
[2025-12-16 13:16:34]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-16 13:16:34]  replicas=None
[2025-12-16 13:16:34]  scope=mc23_13p6TeV
[2025-12-16 13:16:34]  status=None
[2025-12-16 13:16:34]  status_code=0
[2025-12-16 13:16:34]  storage_token=
[2025-12-16 13:16:34]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6930227299/log.47886933._006217.job.log.tgz.1
[2025-12-16 13:16:34]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/37/ec/log.47886933._006217.job.log.tgz.1
[2025-12-16 13:16:34]  workdir=None
[2025-12-16 13:16:34] ]
[2025-12-16 13:16:34] 2025-12-16 18:15:51,787 | INFO     | transferring file log.47886933._006217.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6930227299/log.47886933._006217.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-16 13:16:34] 2025-12-16 18:15:51,787 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6930227299/log.47886933._006217.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886933._006217.job
[2025-12-16 13:16:34] 2025-12-16 18:15:51,811 | INFO     | adding to output.list: log.47886933._006217.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/37/ec/log.47886933._006217.job.log.tg
[2025-12-16 13:16:34] 2025-12-16 18:15:51,812 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-16 13:16:34] 2025-12-16 18:15:51,812 | INFO     | summary of transferred files:
[2025-12-16 13:16:34] 2025-12-16 18:15:51,812 | INFO     |  -- lfn=log.47886933._006217.job.log.tgz.1, status_code=0, status=transferred
[2025-12-16 13:16:34] 2025-12-16 18:15:51,812 | INFO     | stage-out finished correctly
[2025-12-16 13:16:34] 2025-12-16 18:15:53,606 | INFO     | monitor loop #349: job 0:6930227299 is in state 'finished'
[2025-12-16 13:16:34] 2025-12-16 18:15:53,611 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 13:16:34] 2025-12-16 18:15:53,624 | INFO     | time since job start (4651s) is within the limit (174528.0s)
[2025-12-16 13:16:34] 2025-12-16 18:15:53,927 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-16 13:16:34] 2025-12-16 18:15:54,006 | INFO     | job 6930227299 has state=finished
[2025-12-16 13:16:34] 2025-12-16 18:15:54,006 | INFO     | preparing for final server update for job 6930227299 in state='finished'
[2025-12-16 13:16:34] 2025-12-16 18:15:54,007 | INFO     | this job has now completed (state=finished)
[2025-12-16 13:16:34] 2025-12-16 18:15:54,007 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-16 13:16:34] 2025-12-16 18:15:54,007 | INFO     | log transfer has been attempted: DONE
[2025-12-16 13:16:34] 2025-12-16 18:15:54,007 | INFO     | job 6930227299 has finished - writing final server update
[2025-12-16 13:16:34] 2025-12-16 18:15:54,008 | INFO     | total number of processed events: 400 (read)
[2025-12-16 13:16:34] 2025-12-16 18:15:54,010 | INFO     | executing command: lscpu
[2025-12-16 13:16:34] 2025-12-16 18:15:54,040 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-16 13:16:34] 2025-12-16 18:15:55,630 | INFO     | time since job start (4653s) is within the limit (174528.0s)
[2025-12-16 13:16:34] 2025-12-16 18:15:56,115 | INFO     | monitor loop #350: job 0:6930227299 is in state 'finished'
[2025-12-16 13:16:34] 2025-12-16 18:15:56,115 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 13:16:34] 2025-12-16 18:15:57,635 | INFO     | time since job start (4655s) is within the limit (174528.0s)
[2025-12-16 13:16:34] 2025-12-16 18:15:58,618 | INFO     | monitor loop #351: job 0:6930227299 is in state 'finished'
[2025-12-16 13:16:34] 2025-12-16 18:15:58,619 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 13:16:34] 2025-12-16 18:15:59,641 | INFO     | time since job start (4657s) is within the limit (174528.0s)
[2025-12-16 13:16:34] 2025-12-16 18:16:00,242 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-16 13:16:34] 2025-12-16 18:16:00,245 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-12-16 13:16:34] 2025-12-16 18:16:00,247 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6930227299/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 13:16:34] 2025-12-16 18:16:00,248 | INFO     | extracted standard info from prmon json
[2025-12-16 13:16:34] 2025-12-16 18:16:00,249 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 13:16:34] 2025-12-16 18:16:00,249 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 13:16:34] 2025-12-16 18:16:00,250 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 13:16:34] 2025-12-16 18:16:00,250 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 13:16:34] 2025-12-16 18:16:00,252 | INFO     | fitting pss+swap vs Time
[2025-12-16 13:16:34] 2025-12-16 18:16:00,252 | INFO     | sum of square deviations: 101843770.0
[2025-12-16 13:16:34] 2025-12-16 18:16:00,252 | INFO     | sum of deviations: -9002622780.0
[2025-12-16 13:16:34] 2025-12-16 18:16:00,253 | INFO     | mean x: 1765906710.0
[2025-12-16 13:16:34] 2025-12-16 18:16:00,253 | INFO     | mean y: 2766201.84057971
[2025-12-16 13:16:34] 2025-12-16 18:16:00,253 | INFO     | intersect: 156102564695.16867
[2025-12-16 13:16:34] 2025-12-16 18:16:00,253 | INFO     | chi2: 0.055012659903554285
[2025-12-16 13:16:34] 2025-12-16 18:16:00,253 | INFO     | current memory leak: -88.40 B/s (using 69 data points, chi2=0.06)
[2025-12-16 13:16:34] 2025-12-16 18:16:00,254 | INFO     | could have reported an average CPU frequency of 2041 MHz (6 samples)
[2025-12-16 13:16:34] 2025-12-16 18:16:00,254 | INFO     | ..............................
[2025-12-16 13:16:34] 2025-12-16 18:16:00,254 | INFO     | . Timing measurements:
[2025-12-16 13:16:34] 2025-12-16 18:16:00,254 | INFO     | . get job = 0 s
[2025-12-16 13:16:34] 2025-12-16 18:16:00,254 | INFO     | . initial setup = 2 s
[2025-12-16 13:16:34] 2025-12-16 18:16:00,254 | INFO     | . payload setup = 7 s
[2025-12-16 13:16:34] 2025-12-16 18:16:00,254 | INFO     | . stage-in = 0 s
[2025-12-16 13:16:34] 2025-12-16 18:16:00,255 | INFO     | . payload execution = 4622 s
[2025-12-16 13:16:34] 2025-12-16 18:16:00,255 | INFO     | . stage-out = 0 s
[2025-12-16 13:16:34] 2025-12-16 18:16:00,255 | INFO     | . log creation = 0 s
[2025-12-16 13:16:34] 2025-12-16 18:16:00,255 | INFO     | ..............................
[2025-12-16 13:16:34] 2025-12-16 18:16:00,695 | INFO     | 
[2025-12-16 13:16:34] 2025-12-16 18:16:00,696 | INFO     | job summary report
[2025-12-16 13:16:34] 2025-12-16 18:16:00,696 | INFO     | --------------------------------------------------
[2025-12-16 13:16:34] 2025-12-16 18:16:00,696 | INFO     | PanDA job id: 6930227299
[2025-12-16 13:16:34] 2025-12-16 18:16:00,696 | INFO     | task id: 47886933
[2025-12-16 13:16:34] 2025-12-16 18:16:00,696 | INFO     | errors: (none)
[2025-12-16 13:16:34] 2025-12-16 18:16:00,697 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 13:16:34] 2025-12-16 18:16:00,697 | INFO     | pilot state: finished 
[2025-12-16 13:16:34] 2025-12-16 18:16:00,697 | INFO     | transexitcode: 0
[2025-12-16 13:16:34] 2025-12-16 18:16:00,697 | INFO     | exeerrorcode: 0
[2025-12-16 13:16:34] 2025-12-16 18:16:00,697 | INFO     | exeerrordiag: 
[2025-12-16 13:16:34] 2025-12-16 18:16:00,697 | INFO     | exitcode: 0
[2025-12-16 13:16:34] 2025-12-16 18:16:00,697 | INFO     | exitmsg: OK
[2025-12-16 13:16:34] 2025-12-16 18:16:00,698 | INFO     | cpuconsumptiontime: 49669 s
[2025-12-16 13:16:34] 2025-12-16 18:16:00,698 | INFO     | nevents: 400
[2025-12-16 13:16:34] 2025-12-16 18:16:00,698 | INFO     | neventsw: 0
[2025-12-16 13:16:34] 2025-12-16 18:16:00,698 | INFO     | pid: 24389
[2025-12-16 13:16:34] 2025-12-16 18:16:00,698 | INFO     | pgrp: 24389
[2025-12-16 13:16:34] 2025-12-16 18:16:00,698 | INFO     | corecount: 12
[2025-12-16 13:16:34] 2025-12-16 18:16:00,699 | INFO     | event service: False
[2025-12-16 13:16:34] 2025-12-16 18:16:00,699 | INFO     | sizes: {0: 2283794, 1: 2283993, 6: 2284255, 11: 2284283, 4633: 2310406, 4634: 2319404, 4636: 2319588, 4642: 2319782}
[2025-12-16 13:16:34] 2025-12-16 18:16:00,699 | INFO     | --------------------------------------------------
[2025-12-16 13:16:34] 2025-12-16 18:16:00,699 | INFO     | 
[2025-12-16 13:16:34] 2025-12-16 18:16:00,699 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-16 13:16:34] 2025-12-16 18:16:00,725 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 13:16:34] 2025-12-16 18:16:00,726 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 13:16:34] 2025-12-16 18:16:00,726 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 13:16:34] 2025-12-16 18:16:00,726 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 13:16:34] 2025-12-16 18:16:00,726 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 13:16:34] 2025-12-16 18:16:00,726 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 13:16:34] 2025-12-16 18:16:00,726 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 13:16:34] 2025-12-16 18:16:00,727 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 13:16:34] 2025-12-16 18:16:00,727 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 13:16:34] 2025-12-16 18:16:00,727 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 13:16:34] 2025-12-16 18:16:00,727 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 13:16:34] 2025-12-16 18:16:00,727 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 13:16:34] 2025-12-16 18:16:00,727 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 13:16:34] 2025-12-16 18:16:00,728 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 13:16:34] 2025-12-16 18:16:00,728 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 13:16:34] 2025-12-16 18:16:00,728 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 13:16:34] 2025-12-16 18:16:00,728 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 13:16:34] 2025-12-16 18:16:00,728 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 13:16:34] 2025-12-16 18:16:00,728 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 13:16:34] 2025-12-16 18:16:00,729 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 13:16:34] 2025-12-16 18:16:00,729 | INFO     | job 6930227299 has completed (purged errors)
[2025-12-16 13:16:34] 2025-12-16 18:16:00,729 | INFO     | overall cleanup function is called
[2025-12-16 13:16:34] 2025-12-16 18:16:01,737 | INFO     | --- collectZombieJob: --- 10, [24389]
[2025-12-16 13:16:34] 2025-12-16 18:16:01,737 | INFO     | zombie collector waiting for pid 24389
[2025-12-16 13:16:34] 2025-12-16 18:16:01,738 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 13:16:34] 2025-12-16 18:16:01,738 | INFO     | collected zombie processes
[2025-12-16 13:16:34] 2025-12-16 18:16:01,738 | INFO     | will attempt to kill all subprocesses of pid=24389
[2025-12-16 13:16:34] 2025-12-16 18:16:01,829 | INFO     | process IDs to be killed: [24389] (in reverse order)
[2025-12-16 13:16:34] 2025-12-16 18:16:01,881 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 13:16:34] 2025-12-16 18:16:01,881 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 13:16:34] 2025-12-16 18:16:01,885 | INFO     | did not find any defunct processes belonging to 24389
[2025-12-16 13:16:34] 2025-12-16 18:16:01,887 | INFO     | did not find any defunct processes belonging to 24389
[2025-12-16 13:16:34] 2025-12-16 18:16:01,887 | INFO     | ready for new job
[2025-12-16 13:16:34] 2025-12-16 18:16:01,887 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 13:16:34] 2025-12-16 18:16:01,889 | INFO     | ***************************************
[2025-12-16 13:16:34] 2025-12-16 18:16:01,889 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 13:16:34] 2025-12-16 18:16:01,889 | INFO     | ***************************************
[2025-12-16 13:16:34] 2025-12-16 18:16:01,889 | INFO     | 
[2025-12-16 13:16:34] 2025-12-16 18:16:01,889 | INFO     | architecture information:
[2025-12-16 13:16:34] 2025-12-16 18:16:01,890 | INFO     | executing command: cat /etc/os-release
[2025-12-16 13:16:34] 2025-12-16 18:16:01,905 | INFO     | cat /etc/os-release:
[2025-12-16 13:16:34] NAME="CentOS Linux"
[2025-12-16 13:16:34] VERSION="7 (Core)"
[2025-12-16 13:16:34] ID="centos"
[2025-12-16 13:16:34] ID_LIKE="rhel fedora"
[2025-12-16 13:16:34] VERSION_ID="7"
[2025-12-16 13:16:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 13:16:34] ANSI_COLOR="0;31"
[2025-12-16 13:16:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 13:16:34] HOME_URL="https://www.centos.org/"
[2025-12-16 13:16:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 13:16:34] 
[2025-12-16 13:16:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 13:16:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 13:16:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 13:16:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 13:16:34] 
[2025-12-16 13:16:34] 2025-12-16 18:16:01,905 | INFO     | ***************************************
[2025-12-16 13:16:34] 2025-12-16 18:16:02,409 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-16 13:16:34] 2025-12-16 18:16:02,427 | INFO     | sufficient remaining disk space (29454499840 B)
[2025-12-16 13:16:34] 2025-12-16 18:16:02,427 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 13:16:34] 2025-12-16 18:16:02,427 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 13:16:34] 2025-12-16 18:16:02,427 | INFO     | update_server=False
[2025-12-16 13:16:34] 2025-12-16 18:16:02,428 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 13:16:34] 2025-12-16 18:16:02,428 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 13:16:34] 2025-12-16 18:16:02,428 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 13:16:34] 2025-12-16 18:16:02,429 | INFO     | aborting loop
[2025-12-16 13:16:34] 2025-12-16 18:16:02,675 | INFO     | all payload control threads have been joined
[2025-12-16 13:16:34] 2025-12-16 18:16:02,901 | INFO     | all data control threads have been joined
[2025-12-16 13:16:34] 2025-12-16 18:16:02,939 | INFO     | all job control threads have been joined
[2025-12-16 13:16:34] 2025-12-16 18:16:03,433 | INFO     | [job] retrieve thread has finished
[2025-12-16 13:16:34] 2025-12-16 18:16:03,434 | INFO     | [job] job monitor thread has finished
[2025-12-16 13:16:34] 2025-12-16 18:16:03,471 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 13:16:34] 2025-12-16 18:16:03,590 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 13:16:34] 2025-12-16 18:16:03,681 | INFO     | [payload] control thread has finished
[2025-12-16 13:16:34] 2025-12-16 18:16:03,783 | INFO     | [payload] failed_post thread has finished
[2025-12-16 13:16:34] 2025-12-16 18:16:03,906 | INFO     | [data] control thread has finished
[2025-12-16 13:16:34] 2025-12-16 18:16:03,945 | INFO     | [job] control thread has finished
[2025-12-16 13:16:34] 2025-12-16 18:16:04,046 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 13:16:34] 2025-12-16 18:16:04,161 | INFO     | [data] copytool_in thread has finished
[2025-12-16 13:16:34] 2025-12-16 18:16:04,434 | INFO     | [data] copytool_out thread has finished
[2025-12-16 13:16:34] 2025-12-16 18:16:04,515 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 13:16:34] 2025-12-16 18:16:04,648 | INFO     | [job] validate thread has finished
[2025-12-16 13:16:34] 2025-12-16 18:16:04,928 | INFO     | [payload] validate_post thread has finished
[2025-12-16 13:16:34] 2025-12-16 18:16:05,347 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 13:16:34] 2025-12-16 18:16:06,349 | INFO     | [job] queue monitor thread has finished
[2025-12-16 13:16:34] 2025-12-16 18:16:08,521 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 13:16:34] 2025-12-16 18:16:13,088 | INFO     | job.realtimelogging is not enabled
[2025-12-16 13:16:34] 2025-12-16 18:16:14,094 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 13:16:34] 2025-12-16 18:16:28,858 | INFO     | [monitor] cgroup control has ended
[2025-12-16 13:16:34] 2025-12-16 18:16:29,171 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139634743039808)>', '<ExcThread(monitor, started 139634436708096)>']
[2025-12-16 13:16:34] 2025-12-16 18:16:32,845 | INFO     | PID=17998 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 13:16:34] 2025-12-16 18:16:32,846 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 13:16:34] 2025-12-16 18:16:32,846 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 13:16:34] 2025-12-16 18:16:32,846 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 13:16:34] 2025-12-16 18:16:32,846 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 13:16:34] 2025-12-16 18:16:32,846 | INFO     | [monitor] control thread has ended
[2025-12-16 13:16:34] 2025-12-16 18:16:34,183 | INFO     | all workflow threads have been joined
[2025-12-16 13:16:34] 2025-12-16 18:16:34,184 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 13:16:34] 2025-12-16 18:16:34,184 | INFO     | traces error code: 0
[2025-12-16 13:16:34] 2025-12-16 18:16:34,184 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 13:16:34] 2025-12-16 18:16:34,274 [wrapper] ==== pilot stdout END ====
[2025-12-16 13:16:34] 2025-12-16 18:16:34,278 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 13:16:34] 2025-12-16 18:16:34,282 [wrapper] pilotpid: 17998
[2025-12-16 13:16:34] 2025-12-16 18:16:34,286 [wrapper] Pilot exit status: 0
[2025-12-16 13:16:34] 2025-12-16 18:16:34,301 [wrapper] pandaids: 6930227299
[2025-12-16 13:16:34] 2025-12-16 18:16:34,343 [wrapper] cleanup supervisor_pilot 20188 17999
[2025-12-16 13:16:34] 2025-12-16 18:16:34,347 [wrapper] Test setup, not cleaning
[2025-12-16 13:16:34] 2025-12-16 18:16:34,351 [wrapper] apfmon messages muted
[2025-12-16 13:16:34] 2025-12-16 18:16:34,355 [wrapper] ==== wrapper stdout END ====
[2025-12-16 13:16:34] 2025-12-16 18:16:34,359 [wrapper] ==== wrapper stderr END ====
[2025-12-16 13:16:34]  *** Error codes and diagnostics ***
[2025-12-16 13:16:34]     "exeErrorCode": 0,
[2025-12-16 13:16:34]     "exeErrorDiag": "",
[2025-12-16 13:16:34]     "pilotErrorCode": 0,
[2025-12-16 13:16:34]     "pilotErrorDiag": "",
[2025-12-16 13:16:34]  *** Listing of results directory ***
[2025-12-16 13:16:34] total 337968
[2025-12-16 13:16:34] -rw-r--r-- 1 boincer umatlas    579449 Dec 15 18:23 pilot3.tar.gz
[2025-12-16 13:16:34] -rwx------ 1 boincer umatlas     36322 Dec 15 18:25 runpilot2-wrapper.sh
[2025-12-16 13:16:34] -rw-r--r-- 1 boincer umatlas      5112 Dec 15 18:26 queuedata.json
[2025-12-16 13:16:34] -rw-r--r-- 1 boincer umatlas       100 Dec 16 11:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 13:16:34] -rwxr-xr-x 1 boincer umatlas      7986 Dec 16 11:58 run_atlas
[2025-12-16 13:16:34] -rw-r--r-- 1 boincer umatlas       105 Dec 16 11:58 job.xml
[2025-12-16 13:16:34] -rw-r--r-- 2 boincer umatlas 192552199 Dec 16 11:58 EVNT.47886929._000321.pool.root.1
[2025-12-16 13:16:34] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 11:58 start_atlas.sh
[2025-12-16 13:16:34] drwxrwx--x 2 boincer umatlas      4096 Dec 16 11:58 shared
[2025-12-16 13:16:34] -rw-r--r-- 2 boincer umatlas    592404 Dec 16 11:58 input.tar.gz
[2025-12-16 13:16:34] -rw-r--r-- 1 boincer umatlas         0 Dec 16 11:58 boinc_lockfile
[2025-12-16 13:16:34] -rw-r--r-- 1 boincer umatlas      2513 Dec 16 11:58 pandaJob.out
[2025-12-16 13:16:34] -rw------- 1 boincer umatlas        57 Dec 16 11:58 setup.sh.local
[2025-12-16 13:16:34] -rw------- 1 boincer umatlas    987401 Dec 16 11:58 agis_schedconf.cvmfs.json
[2025-12-16 13:16:34] -rw------- 1 boincer umatlas   1516240 Dec 16 11:58 agis_ddmendpoints.agis.ALL.json
[2025-12-16 13:16:34] drwx------ 5 boincer umatlas      4096 Dec 16 11:58 pilot3
[2025-12-16 13:16:34] -rw-r--r-- 1 boincer umatlas      5953 Dec 16 13:10 init_data.xml
[2025-12-16 13:16:34] -rw------- 1 boincer umatlas 147496753 Dec 16 13:15 HITS.47886933._006217.pool.root.1
[2025-12-16 13:16:34] -rw-r--r-- 1 boincer umatlas       529 Dec 16 13:15 boinc_task_state.xml
[2025-12-16 13:16:34] -rw------- 1 boincer umatlas      1045 Dec 16 13:15 memory_monitor_summary.json
[2025-12-16 13:16:34] -rw------- 1 boincer umatlas    386385 Dec 16 13:15 log.47886933._006217.job.log.tgz.1
[2025-12-16 13:16:34] -rw------- 1 boincer umatlas      7853 Dec 16 13:16 heartbeat.json
[2025-12-16 13:16:34] -rw------- 1 boincer umatlas        95 Dec 16 13:16 pilot_heartbeat.json
[2025-12-16 13:16:34] -rw-r--r-- 1 boincer umatlas        27 Dec 16 13:16 wrapper_checkpoint.txt
[2025-12-16 13:16:34] -rw------- 1 boincer umatlas      4818 Dec 16 13:16 pilotlog.txt
[2025-12-16 13:16:34] -rw------- 1 boincer umatlas    674553 Dec 16 13:16 log.47886933._006217.job.log.1
[2025-12-16 13:16:34] -rw-r--r-- 1 boincer umatlas      8192 Dec 16 13:16 boinc_mmap_file
[2025-12-16 13:16:34] -rw------- 1 boincer umatlas       357 Dec 16 13:16 output.list
[2025-12-16 13:16:34] -rw-r--r-- 1 boincer umatlas       620 Dec 16 13:16 runtime_log
[2025-12-16 13:16:34] -rw------- 1 boincer umatlas   1075200 Dec 16 13:16 result.tar.gz
[2025-12-16 13:16:34] -rw------- 1 boincer umatlas       659 Dec 16 13:16 vUfMDmh7Wp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmBUUKDmHaWxRm.diag
[2025-12-16 13:16:34] -rw-r--r-- 1 boincer umatlas      9344 Dec 16 13:16 runtime_log.err
[2025-12-16 13:16:34] -rw-r--r-- 1 boincer umatlas     21836 Dec 16 13:16 stderr.txt
[2025-12-16 13:16:34] HITS file was successfully produced:
[2025-12-16 13:16:34] -rw------- 1 boincer umatlas 147496753 Dec 16 13:15 shared/HITS.pool.root.1
[2025-12-16 13:16:34]  *** Contents of shared directory: ***
[2025-12-16 13:16:34] total 333732
[2025-12-16 13:16:34] -rw-r--r-- 2 boincer umatlas 192552199 Dec 16 11:58 ATLAS.root_0
[2025-12-16 13:16:34] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 11:58 start_atlas.sh
[2025-12-16 13:16:34] -rw-r--r-- 2 boincer umatlas    592404 Dec 16 11:58 input.tar.gz
[2025-12-16 13:16:34] -rw------- 1 boincer umatlas 147496753 Dec 16 13:15 HITS.pool.root.1
[2025-12-16 13:16:34] -rw------- 1 boincer umatlas   1075200 Dec 16 13:16 result.tar.gz
13:16:36 (14322): run_atlas exited; CPU time 49656.209903
13:16:36 (14322): called boinc_finish(0)

</stderr_txt>
]]>

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