Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:16:54 (32547): wrapper (7.7.26015): starting
23:16:54 (32547): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 23:16:54] Arguments: --nthreads 8
[2025-12-16 23:16:54] Threads: 8
[2025-12-16 23:16:54] Checking for CVMFS
[2025-12-16 23:16:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 23:16:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 23:16:56] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 23:16:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 23:16:57] 2.11.2.0 2518 1442 64276 154090 1 256 24822679 25165825 4686 130560 0 976517 99.891 301209 1526 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-16 23:16:57] CVMFS is ok
[2025-12-16 23:16:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 23:16:57] Checking for apptainer binary...
[2025-12-16 23:16:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 23:16:57] Running /usr/bin/apptainer --version
[2025-12-16 23:16:57] apptainer version 1.3.2-1.el7
[2025-12-16 23:16:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 23:17:06] cg-vwn419.simple-grid.lan
[2025-12-16 23:17:06] apptainer works
[2025-12-16 23:17:06] Set ATHENA_PROC_NUMBER=8
[2025-12-16 23:17:06] Set ATHENA_CORE_NUMBER=8
[2025-12-16 23:17:06] Starting ATLAS job with PandaID=6930225440
[2025-12-16 23:17:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 03:38:03]  *** The last 200 lines of the pilot log: ***
[2025-12-17 03:38:03] 2025-12-17 02:37:02,477 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-17 03:38:03] 2025-12-17 02:37:02,479 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6930225440/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 03:38:03] 2025-12-17 02:37:02,479 | INFO     | extracted standard info from prmon json
[2025-12-17 03:38:03] 2025-12-17 02:37:02,480 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 03:38:03] 2025-12-17 02:37:02,480 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 03:38:03] 2025-12-17 02:37:02,480 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 03:38:03] 2025-12-17 02:37:02,480 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 03:38:03] 2025-12-17 02:37:02,485 | INFO     | fitting pss+swap vs Time
[2025-12-17 03:38:03] 2025-12-17 02:37:02,486 | INFO     | sum of square deviations: 4504437945.0
[2025-12-17 03:38:03] 2025-12-17 02:37:02,488 | INFO     | sum of deviations: 36158939530.5
[2025-12-17 03:38:03] 2025-12-17 02:37:02,489 | INFO     | mean x: 1765931485.5
[2025-12-17 03:38:03] 2025-12-17 02:37:02,489 | INFO     | mean y: 2455614.2172131147
[2025-12-17 03:38:03] 2025-12-17 02:37:02,489 | INFO     | intersect: -14173388426.453777
[2025-12-17 03:38:03] 2025-12-17 02:37:02,489 | INFO     | chi2: 5.5177667150942025
[2025-12-17 03:38:03] 2025-12-17 02:37:02,490 | INFO     | sum of square deviations: 4233158440.0
[2025-12-17 03:38:03] 2025-12-17 02:37:02,492 | INFO     | sum of deviations: 51413308137.0
[2025-12-17 03:38:03] 2025-12-17 02:37:02,492 | INFO     | mean x: 1765931333.0
[2025-12-17 03:38:03] 2025-12-17 02:37:02,492 | INFO     | mean y: 2464039.6652719667
[2025-12-17 03:38:03] 2025-12-17 02:37:02,492 | INFO     | intersect: -21445438999.917664
[2025-12-17 03:38:03] 2025-12-17 02:37:02,493 | INFO     | chi2: 4.792144407628288
[2025-12-17 03:38:03] 2025-12-17 02:37:02,493 | INFO     | current chi2=4.792144407628288 (change=13.150652155715978 %)
[2025-12-17 03:38:03] 2025-12-17 02:37:02,493 | INFO     | right removable region: 238
[2025-12-17 03:38:03] 2025-12-17 02:37:02,494 | INFO     | sum of square deviations: 4233158440.0
[2025-12-17 03:38:03] 2025-12-17 02:37:02,496 | INFO     | sum of deviations: -42291344957.00001
[2025-12-17 03:38:03] 2025-12-17 02:37:02,496 | INFO     | mean x: 1765931638.0
[2025-12-17 03:38:03] 2025-12-17 02:37:02,496 | INFO     | mean y: 2499641.619246862
[2025-12-17 03:38:03] 2025-12-17 02:37:02,496 | INFO     | intersect: 17645029476.41987
[2025-12-17 03:38:03] 2025-12-17 02:37:02,496 | INFO     | chi2: 1.4309976308457335
[2025-12-17 03:38:03] 2025-12-17 02:37:02,497 | INFO     | current chi2=1.4309976308457335 (change=74.06563733600501 %)
[2025-12-17 03:38:03] 2025-12-17 02:37:02,497 | INFO     | sum of square deviations: 3972995422.5
[2025-12-17 03:38:03] 2025-12-17 02:37:02,499 | INFO     | sum of deviations: -60579479511.50001
[2025-12-17 03:38:03] 2025-12-17 02:37:02,499 | INFO     | mean x: 1765931790.5
[2025-12-17 03:38:03] 2025-12-17 02:37:02,500 | INFO     | mean y: 2510255.55982906
[2025-12-17 03:38:03] 2025-12-17 02:37:02,500 | INFO     | intersect: 26929102749.337433
[2025-12-17 03:38:03] 2025-12-17 02:37:02,500 | INFO     | chi2: 1.0051909272213395
[2025-12-17 03:38:03] 2025-12-17 02:37:02,500 | INFO     | current chi2=1.0051909272213395 (change=29.755933514211208 %)
[2025-12-17 03:38:03] 2025-12-17 02:37:02,501 | INFO     | sum of square deviations: 3723716330.0
[2025-12-17 03:38:03] 2025-12-17 02:37:02,503 | INFO     | sum of deviations: -55612838679.99998
[2025-12-17 03:38:03] 2025-12-17 02:37:02,503 | INFO     | mean x: 1765931943.0
[2025-12-17 03:38:03] 2025-12-17 02:37:02,503 | INFO     | mean y: 2507192.7030567685
[2025-12-17 03:38:03] 2025-12-17 02:37:02,503 | INFO     | intersect: 26376290682.789135
[2025-12-17 03:38:03] 2025-12-17 02:37:02,504 | INFO     | chi2: 0.9931604303274462
[2025-12-17 03:38:03] 2025-12-17 02:37:02,504 | INFO     | current chi2=0.9931604303274462 (change=1.1968369956491138 %)
[2025-12-17 03:38:03] 2025-12-17 02:37:02,504 | INFO     | left removable region: 30
[2025-12-17 03:38:03] 2025-12-17 02:37:02,504 | INFO     | sum of square deviations: 2790348132.0
[2025-12-17 03:38:03] 2025-12-17 02:37:02,506 | INFO     | sum of deviations: -15522765647.999998
[2025-12-17 03:38:03] 2025-12-17 02:37:02,506 | INFO     | mean x: 1765932217.5
[2025-12-17 03:38:03] 2025-12-17 02:37:02,506 | INFO     | mean y: 2500610.4134615385
[2025-12-17 03:38:03] 2025-12-17 02:37:02,507 | INFO     | intersect: 9826418869.264418
[2025-12-17 03:38:03] 2025-12-17 02:37:02,507 | INFO     | chi2: 0.1304368621268963
[2025-12-17 03:38:03] 2025-12-17 02:37:02,507 | INFO     | current memory leak: -5.56 B/s (using 208 data points, chi2=0.13)
[2025-12-17 03:38:03] 2025-12-17 02:37:02,508 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-12-17 03:38:03] 2025-12-17 02:37:02,508 | INFO     | ..............................
[2025-12-17 03:38:03] 2025-12-17 02:37:02,508 | INFO     | . Timing measurements:
[2025-12-17 03:38:03] 2025-12-17 02:37:02,508 | INFO     | . get job = 0 s
[2025-12-17 03:38:03] 2025-12-17 02:37:02,508 | INFO     | . initial setup = 5 s
[2025-12-17 03:38:03] 2025-12-17 02:37:02,508 | INFO     | . payload setup = 126 s
[2025-12-17 03:38:03] 2025-12-17 02:37:02,508 | INFO     | . stage-in = 0 s
[2025-12-17 03:38:03] 2025-12-17 02:37:02,508 | INFO     | . payload execution = 14999 s
[2025-12-17 03:38:03] 2025-12-17 02:37:02,508 | INFO     | . stage-out = 2 s
[2025-12-17 03:38:03] 2025-12-17 02:37:02,509 | INFO     | . log creation = 0 s
[2025-12-17 03:38:03] 2025-12-17 02:37:02,509 | INFO     | ..............................
[2025-12-17 03:38:03] 2025-12-17 02:37:02,771 | INFO     | time since job start (15395s) is within the limit (174528.0s)
[2025-12-17 03:38:03] 2025-12-17 02:37:02,927 | INFO     | 
[2025-12-17 03:38:03] 2025-12-17 02:37:02,927 | INFO     | job summary report
[2025-12-17 03:38:03] 2025-12-17 02:37:02,927 | INFO     | --------------------------------------------------
[2025-12-17 03:38:03] 2025-12-17 02:37:02,927 | INFO     | PanDA job id: 6930225440
[2025-12-17 03:38:03] 2025-12-17 02:37:02,927 | INFO     | task id: 47886831
[2025-12-17 03:38:03] 2025-12-17 02:37:02,927 | INFO     | errors: (none)
[2025-12-17 03:38:03] 2025-12-17 02:37:02,928 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 03:38:03] 2025-12-17 02:37:02,928 | INFO     | pilot state: finished 
[2025-12-17 03:38:03] 2025-12-17 02:37:02,928 | INFO     | transexitcode: 0
[2025-12-17 03:38:03] 2025-12-17 02:37:02,928 | INFO     | exeerrorcode: 0
[2025-12-17 03:38:03] 2025-12-17 02:37:02,928 | INFO     | exeerrordiag: 
[2025-12-17 03:38:03] 2025-12-17 02:37:02,928 | INFO     | exitcode: 0
[2025-12-17 03:38:03] 2025-12-17 02:37:02,928 | INFO     | exitmsg: OK
[2025-12-17 03:38:03] 2025-12-17 02:37:02,928 | INFO     | cpuconsumptiontime: 57307 s
[2025-12-17 03:38:03] 2025-12-17 02:37:02,928 | INFO     | nevents: 400
[2025-12-17 03:38:03] 2025-12-17 02:37:02,929 | INFO     | neventsw: 0
[2025-12-17 03:38:03] 2025-12-17 02:37:02,929 | INFO     | pid: 10531
[2025-12-17 03:38:03] 2025-12-17 02:37:02,929 | INFO     | pgrp: 10531
[2025-12-17 03:38:03] 2025-12-17 02:37:02,929 | INFO     | corecount: 8
[2025-12-17 03:38:03] 2025-12-17 02:37:02,929 | INFO     | event service: False
[2025-12-17 03:38:03] 2025-12-17 02:37:02,929 | INFO     | sizes: {0: 2283823, 1: 2284022, 12: 2284022, 23: 2284050, 33: 2284078, 44: 2284134, 55: 2284290, 66: 2284318, 76: 2284346, 86: 2284664, 87: 2284692, 15129: 2315293
[2025-12-17 03:38:03] 2025-12-17 02:37:02,929 | INFO     | --------------------------------------------------
[2025-12-17 03:38:03] 2025-12-17 02:37:02,929 | INFO     | 
[2025-12-17 03:38:03] 2025-12-17 02:37:02,929 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-12-17 03:38:03] 2025-12-17 02:37:03,127 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 03:38:03] 2025-12-17 02:37:03,127 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 03:38:03] 2025-12-17 02:37:03,127 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 03:38:03] 2025-12-17 02:37:03,128 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 03:38:03] 2025-12-17 02:37:03,128 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 03:38:03] 2025-12-17 02:37:03,128 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 03:38:03] 2025-12-17 02:37:03,128 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 03:38:03] 2025-12-17 02:37:03,128 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 03:38:03] 2025-12-17 02:37:03,128 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 03:38:03] 2025-12-17 02:37:03,128 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 03:38:03] 2025-12-17 02:37:03,128 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 03:38:03] 2025-12-17 02:37:03,129 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 03:38:03] 2025-12-17 02:37:03,129 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 03:38:03] 2025-12-17 02:37:03,129 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 03:38:03] 2025-12-17 02:37:03,129 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 03:38:03] 2025-12-17 02:37:03,129 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 03:38:03] 2025-12-17 02:37:03,129 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 03:38:03] 2025-12-17 02:37:03,129 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 03:38:03] 2025-12-17 02:37:03,129 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 03:38:03] 2025-12-17 02:37:03,130 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 03:38:03] 2025-12-17 02:37:03,130 | INFO     | job 6930225440 has completed (purged errors)
[2025-12-17 03:38:03] 2025-12-17 02:37:03,130 | INFO     | overall cleanup function is called
[2025-12-17 03:38:03] 2025-12-17 02:37:04,138 | INFO     | --- collectZombieJob: --- 10, [10531]
[2025-12-17 03:38:03] 2025-12-17 02:37:04,138 | INFO     | zombie collector waiting for pid 10531
[2025-12-17 03:38:03] 2025-12-17 02:37:04,138 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 03:38:03] 2025-12-17 02:37:04,138 | INFO     | collected zombie processes
[2025-12-17 03:38:03] 2025-12-17 02:37:04,138 | INFO     | will attempt to kill all subprocesses of pid=10531
[2025-12-17 03:38:03] 2025-12-17 02:37:04,261 | INFO     | process IDs to be killed: [10531] (in reverse order)
[2025-12-17 03:38:03] 2025-12-17 02:37:04,324 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 03:38:03] 2025-12-17 02:37:04,325 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 03:38:03] 2025-12-17 02:37:04,328 | INFO     | did not find any defunct processes belonging to 10531
[2025-12-17 03:38:03] 2025-12-17 02:37:04,332 | INFO     | did not find any defunct processes belonging to 10531
[2025-12-17 03:38:03] 2025-12-17 02:37:04,332 | INFO     | ready for new job
[2025-12-17 03:38:03] 2025-12-17 02:37:04,332 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 03:38:03] 2025-12-17 02:37:04,336 | INFO     | ***************************************
[2025-12-17 03:38:03] 2025-12-17 02:37:04,336 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 03:38:03] 2025-12-17 02:37:04,336 | INFO     | ***************************************
[2025-12-17 03:38:03] 2025-12-17 02:37:04,336 | INFO     | 
[2025-12-17 03:38:03] 2025-12-17 02:37:04,337 | INFO     | pilot is running in a VM
[2025-12-17 03:38:03] 2025-12-17 02:37:04,337 | INFO     | architecture information:
[2025-12-17 03:38:03] 2025-12-17 02:37:04,337 | INFO     | executing command: cat /etc/os-release
[2025-12-17 03:38:03] 2025-12-17 02:37:04,417 | INFO     | cat /etc/os-release:
[2025-12-17 03:38:03] NAME="CentOS Linux"
[2025-12-17 03:38:03] VERSION="7 (Core)"
[2025-12-17 03:38:03] ID="centos"
[2025-12-17 03:38:03] ID_LIKE="rhel fedora"
[2025-12-17 03:38:03] VERSION_ID="7"
[2025-12-17 03:38:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 03:38:03] ANSI_COLOR="0;31"
[2025-12-17 03:38:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 03:38:03] HOME_URL="https://www.centos.org/"
[2025-12-17 03:38:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 03:38:03] 
[2025-12-17 03:38:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 03:38:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 03:38:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 03:38:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 03:38:03] 
[2025-12-17 03:38:03] 2025-12-17 02:37:04,417 | INFO     | ***************************************
[2025-12-17 03:38:03] 2025-12-17 02:37:04,921 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-12-17 03:38:03] 2025-12-17 02:37:05,112 | INFO     | sufficient remaining disk space (494942552064 B)
[2025-12-17 03:38:03] 2025-12-17 02:37:05,113 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 03:38:03] 2025-12-17 02:37:05,113 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 03:38:03] 2025-12-17 02:37:05,113 | INFO     | update_server=False
[2025-12-17 03:38:03] 2025-12-17 02:37:05,113 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 03:38:03] 2025-12-17 02:37:05,113 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 03:38:03] 2025-12-17 02:37:05,114 | INFO     | aborting loop
[2025-12-17 03:38:03] 2025-12-17 02:37:05,169 | INFO     | all data control threads have been joined
[2025-12-17 03:38:03] 2025-12-17 02:37:05,461 | INFO     | all payload control threads have been joined
[2025-12-17 03:38:03] 2025-12-17 02:37:05,997 | INFO     | all job control threads have been joined
[2025-12-17 03:38:03] 2025-12-17 02:37:06,119 | INFO     | [job] retrieve thread has finished
[2025-12-17 03:38:03] 2025-12-17 02:37:06,119 | INFO     | [job] job monitor thread has finished
[2025-12-17 03:38:03] 2025-12-17 02:37:06,139 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 03:38:03] 2025-12-17 02:37:06,175 | INFO     | [data] control thread has finished
[2025-12-17 03:38:03] 2025-12-17 02:37:06,349 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 03:38:03] 2025-12-17 02:37:06,420 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 03:38:03] 2025-12-17 02:37:06,454 | INFO     | [data] copytool_in thread has finished
[2025-12-17 03:38:03] 2025-12-17 02:37:06,468 | INFO     | [payload] control thread has finished
[2025-12-17 03:38:03] 2025-12-17 02:37:06,627 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 03:38:03] 2025-12-17 02:37:06,825 | INFO     | [job] validate thread has finished
[2025-12-17 03:38:03] 2025-12-17 02:37:07,003 | INFO     | [job] control thread has finished
[2025-12-17 03:38:03] 2025-12-17 02:37:07,095 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 03:38:03] 2025-12-17 02:37:07,108 | INFO     | [payload] failed_post thread has finished
[2025-12-17 03:38:03] 2025-12-17 02:37:07,182 | INFO     | [payload] validate_post thread has finished
[2025-12-17 03:38:03] 2025-12-17 02:37:07,292 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 03:38:03] 2025-12-17 02:37:07,642 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 03:38:03] 2025-12-17 02:37:08,427 | INFO     | [data] copytool_out thread has finished
[2025-12-17 03:38:03] 2025-12-17 02:37:08,648 | INFO     | [job] queue monitor thread has finished
[2025-12-17 03:38:03] 2025-12-17 02:37:10,360 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 03:38:03] 2025-12-17 02:37:34,807 | INFO     | 15403s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-17 03:38:03] 2025-12-17 02:37:35,970 | INFO     | PID=3994 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-17 03:38:03] 2025-12-17 02:37:35,970 | INFO     | .. there are 9 such processes running
[2025-12-17 03:38:03] 2025-12-17 02:37:35,971 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 03:38:03] 2025-12-17 02:37:35,971 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 03:38:03] 2025-12-17 02:37:35,972 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 03:38:03] 2025-12-17 02:37:52,658 | INFO     | [monitor] cgroup control has ended
[2025-12-17 03:38:03] 2025-12-17 02:37:53,541 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139835214821184)>', '<ExcThread(monitor, started 139834773452544)>']
[2025-12-17 03:38:03] 2025-12-17 02:37:54,081 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 03:38:03] 2025-12-17 02:37:54,081 | INFO     | [monitor] control thread has ended
[2025-12-17 03:38:03] 2025-12-17 02:37:58,566 | INFO     | all workflow threads have been joined
[2025-12-17 03:38:03] 2025-12-17 02:37:58,566 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 03:38:03] 2025-12-17 02:37:58,566 | INFO     | traces error code: 0
[2025-12-17 03:38:03] 2025-12-17 02:37:58,566 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 03:38:03] 2025-12-17 02:37:58,889 [wrapper] ==== pilot stdout END ====
[2025-12-17 03:38:03] 2025-12-17 02:37:58,998 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 03:38:03] 2025-12-17 02:37:59,092 [wrapper] pilotpid: 3994
[2025-12-17 03:38:03] 2025-12-17 02:37:59,171 [wrapper] Pilot exit status: 0
[2025-12-17 03:38:03] 2025-12-17 02:37:59,674 [wrapper] pandaids: 6930225440
[2025-12-17 03:38:03] 2025-12-17 02:38:00,628 [wrapper] cleanup supervisor_pilot  5204 3995
[2025-12-17 03:38:03] 2025-12-17 02:38:00,739 [wrapper] Test setup, not cleaning
[2025-12-17 03:38:03] 2025-12-17 02:38:00,841 [wrapper] apfmon messages muted
[2025-12-17 03:38:03] 2025-12-17 02:38:00,921 [wrapper] ==== wrapper stdout END ====
[2025-12-17 03:38:03] 2025-12-17 02:38:00,995 [wrapper] ==== wrapper stderr END ====
[2025-12-17 03:38:03]  *** Error codes and diagnostics ***
[2025-12-17 03:38:03]     "exeErrorCode": 0,
[2025-12-17 03:38:03]     "exeErrorDiag": "",
[2025-12-17 03:38:03]     "pilotErrorCode": 0,
[2025-12-17 03:38:03]     "pilotErrorDiag": "",
[2025-12-17 03:38:03]  *** Listing of results directory ***
[2025-12-17 03:38:03] total 335604
[2025-12-17 03:38:03] -rw-r--r--. 1 boinc boinc    579449 Dec 15 21:57 pilot3.tar.gz
[2025-12-17 03:38:03] -rwx------. 1 boinc boinc     36322 Dec 15 21:58 runpilot2-wrapper.sh
[2025-12-17 03:38:03] -rw-r--r--. 1 boinc boinc      5112 Dec 15 22:00 queuedata.json
[2025-12-17 03:38:03] -rw-r--r--. 1 boinc boinc       100 Dec 16 23:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 03:38:03] -rwxr-xr-x. 1 boinc boinc      7986 Dec 16 23:16 run_atlas
[2025-12-17 03:38:03] -rw-r--r--. 1 boinc boinc       105 Dec 16 23:16 job.xml
[2025-12-17 03:38:03] -rw-r--r--. 2 boinc boinc 189520245 Dec 16 23:16 EVNT.47886829._000403.pool.root.1
[2025-12-17 03:38:03] -rw-r--r--. 2 boinc boinc     15847 Dec 16 23:16 start_atlas.sh
[2025-12-17 03:38:03] drwxrwx--x. 2 boinc boinc        68 Dec 16 23:16 shared
[2025-12-17 03:38:03] -rw-r--r--. 2 boinc boinc    592410 Dec 16 23:16 input.tar.gz
[2025-12-17 03:38:03] -rw-r--r--. 1 boinc boinc      6392 Dec 16 23:16 init_data.xml
[2025-12-17 03:38:03] -rw-r--r--. 1 boinc boinc         0 Dec 16 23:16 boinc_lockfile
[2025-12-17 03:38:03] -rw-r--r--. 1 boinc boinc      2539 Dec 16 23:17 pandaJob.out
[2025-12-17 03:38:03] -rw-------. 1 boinc boinc    987393 Dec 16 23:20 agis_schedconf.cvmfs.json
[2025-12-17 03:38:03] drwx------. 5 boinc boinc      4096 Dec 16 23:20 pilot3
[2025-12-17 03:38:03] -rw-------. 1 boinc boinc 145198395 Dec 17 03:34 HITS.47886831._010219.pool.root.1
[2025-12-17 03:38:03] -rw-r--r--. 1 boinc boinc       531 Dec 17 03:34 boinc_task_state.xml
[2025-12-17 03:38:03] -rw-------. 1 boinc boinc      1014 Dec 17 03:35 memory_monitor_summary.json
[2025-12-17 03:38:03] -rw-------. 1 boinc boinc   1516240 Dec 17 03:35 agis_ddmendpoints.agis.ALL.json
[2025-12-17 03:38:03] -rw-------. 1 boinc boinc    470862 Dec 17 03:35 log.47886831._010219.job.log.tgz.1
[2025-12-17 03:38:03] -rw-------. 1 boinc boinc      7775 Dec 17 03:37 heartbeat.json
[2025-12-17 03:38:03] -rw-------. 1 boinc boinc        95 Dec 17 03:37 pilot_heartbeat.json
[2025-12-17 03:38:03] -rw-r--r--. 1 boinc boinc        28 Dec 17 03:37 wrapper_checkpoint.txt
[2025-12-17 03:38:03] -rw-r--r--. 1 boinc boinc      8192 Dec 17 03:37 boinc_mmap_file
[2025-12-17 03:38:03] -rw-------. 1 boinc boinc      5000 Dec 17 03:37 pilotlog.txt
[2025-12-17 03:38:03] -rw-------. 1 boinc boinc   2054280 Dec 17 03:38 log.47886831._010219.job.log.1
[2025-12-17 03:38:03] -rw-------. 1 boinc boinc       357 Dec 17 03:38 output.list
[2025-12-17 03:38:03] -rw-r--r--. 1 boinc boinc       620 Dec 17 03:38 runtime_log
[2025-12-17 03:38:03] -rw-------. 1 boinc boinc   2539520 Dec 17 03:38 result.tar.gz
[2025-12-17 03:38:03] -rw-r--r--. 1 boinc boinc      8833 Dec 17 03:38 runtime_log.err
[2025-12-17 03:38:03] -rw-------. 1 boinc boinc       656 Dec 17 03:38 f4VLDmipUp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmuJUKDmRR7kin.diag
[2025-12-17 03:38:03] -rw-r--r--. 1 boinc boinc     20817 Dec 17 03:38 stderr.txt
[2025-12-17 03:38:03] HITS file was successfully produced:
[2025-12-17 03:38:03] -rw-------. 1 boinc boinc 145198395 Dec 17 03:34 shared/HITS.pool.root.1
[2025-12-17 03:38:03]  *** Contents of shared directory: ***
[2025-12-17 03:38:03] total 329952
[2025-12-17 03:38:03] -rw-r--r--. 2 boinc boinc 189520245 Dec 16 23:16 ATLAS.root_0
[2025-12-17 03:38:03] -rw-r--r--. 2 boinc boinc     15847 Dec 16 23:16 start_atlas.sh
[2025-12-17 03:38:03] -rw-r--r--. 2 boinc boinc    592410 Dec 16 23:16 input.tar.gz
[2025-12-17 03:38:03] -rw-------. 1 boinc boinc 145198395 Dec 17 03:34 HITS.pool.root.1
[2025-12-17 03:38:03] -rw-------. 1 boinc boinc   2539520 Dec 17 03:38 result.tar.gz
03:38:05 (32547): run_atlas exited; CPU time 57539.206521
03:38:05 (32547): called boinc_finish(0)

</stderr_txt>
]]>

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