Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:51:30 (797603): wrapper (7.7.26015): starting
00:51:30 (797603): wrapper: running run_atlas (--nthreads 3)
[2025-12-17 00:51:30] Arguments: --nthreads 3
[2025-12-17 00:51:30] Threads: 3
[2025-12-17 00:51:30] Checking for CVMFS
[2025-12-17 00:51:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 00:51:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 00:51:30] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 00:51:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 00:51:30] 2.9.2.0 3658277 5248 82468 154092 2 57 19791602 36864000 0 130560 0 3488752 99.989 190546 14942 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-17 00:51:30] CVMFS is ok
[2025-12-17 00:51:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 00:51:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 00:51:30] Further information can be found at the LHC@home message board.
[2025-12-17 00:51:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 00:51:30] Checking for apptainer binary...
[2025-12-17 00:51:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 00:51:30] Running /usr/bin/apptainer --version
[2025-12-17 00:51:30] apptainer version 1.4.1-1.1
[2025-12-17 00:51:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 00:51:30] thA305b
[2025-12-17 00:51:30] apptainer works
[2025-12-17 00:51:30] Set ATHENA_PROC_NUMBER=3
[2025-12-17 00:51:30] Set ATHENA_CORE_NUMBER=3
[2025-12-17 00:51:30] Starting ATLAS job with PandaID=6930660474
[2025-12-17 00:51:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 02:17:54]  *** The last 200 lines of the pilot log: ***
[2025-12-17 02:17:54] 2025-12-17 01:17:22,525 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 02:17:54] 2025-12-17 01:17:22,525 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 02:17:54] 2025-12-17 01:17:22,525 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 02:17:54] 2025-12-17 01:17:22,525 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 02:17:54] 2025-12-17 01:17:22,525 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 02:17:54] 2025-12-17 01:17:22,525 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 02:17:54] 2025-12-17 01:17:22,525 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 02:17:54] 2025-12-17 01:17:22,525 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 02:17:54] 2025-12-17 01:17:22,525 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 02:17:54] 2025-12-17 01:17:22,525 | INFO     | job 6930660474 has completed (purged errors)
[2025-12-17 02:17:54] 2025-12-17 01:17:22,525 | INFO     | overall cleanup function is called
[2025-12-17 02:17:54] 2025-12-17 01:17:23,532 | INFO     | --- collectZombieJob: --- 10, [807778]
[2025-12-17 02:17:54] 2025-12-17 01:17:23,532 | INFO     | zombie collector waiting for pid 807778
[2025-12-17 02:17:54] 2025-12-17 01:17:23,532 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 02:17:54] 2025-12-17 01:17:23,532 | INFO     | collected zombie processes
[2025-12-17 02:17:54] 2025-12-17 01:17:23,532 | INFO     | will attempt to kill all subprocesses of pid=807778
[2025-12-17 02:17:54] 2025-12-17 01:17:23,576 | INFO     | process IDs to be killed: [807778] (in reverse order)
[2025-12-17 02:17:54] 2025-12-17 01:17:23,602 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 02:17:54] 2025-12-17 01:17:23,602 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 02:17:54] 2025-12-17 01:17:23,604 | INFO     | did not find any defunct processes belonging to 807778
[2025-12-17 02:17:54] 2025-12-17 01:17:23,605 | INFO     | did not find any defunct processes belonging to 807778
[2025-12-17 02:17:54] 2025-12-17 01:17:23,605 | INFO     | ready for new job
[2025-12-17 02:17:54] 2025-12-17 01:17:23,605 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 02:17:54] 2025-12-17 01:17:23,606 | INFO     | ***************************************
[2025-12-17 02:17:54] 2025-12-17 01:17:23,606 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 02:17:54] 2025-12-17 01:17:23,606 | INFO     | ***************************************
[2025-12-17 02:17:54] 2025-12-17 01:17:23,606 | INFO     | 
[2025-12-17 02:17:54] 2025-12-17 01:17:23,606 | INFO     | architecture information:
[2025-12-17 02:17:54] 2025-12-17 01:17:23,606 | INFO     | executing command: cat /etc/os-release
[2025-12-17 02:17:54] 2025-12-17 01:17:23,615 | INFO     | cat /etc/os-release:
[2025-12-17 02:17:54] NAME="CentOS Linux"
[2025-12-17 02:17:54] VERSION="7 (Core)"
[2025-12-17 02:17:54] ID="centos"
[2025-12-17 02:17:54] ID_LIKE="rhel fedora"
[2025-12-17 02:17:54] VERSION_ID="7"
[2025-12-17 02:17:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 02:17:54] ANSI_COLOR="0;31"
[2025-12-17 02:17:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 02:17:54] HOME_URL="https://www.centos.org/"
[2025-12-17 02:17:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 02:17:54] 
[2025-12-17 02:17:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 02:17:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 02:17:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 02:17:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 02:17:54] 
[2025-12-17 02:17:54] 2025-12-17 01:17:23,615 | INFO     | ***************************************
[2025-12-17 02:17:54] 2025-12-17 01:17:24,118 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-17 02:17:54] 2025-12-17 01:17:24,130 | INFO     | sufficient remaining disk space (184934203392 B)
[2025-12-17 02:17:54] 2025-12-17 01:17:24,130 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 02:17:54] 2025-12-17 01:17:24,130 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 02:17:54] 2025-12-17 01:17:24,130 | INFO     | update_server=False
[2025-12-17 02:17:54] 2025-12-17 01:17:24,130 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 02:17:54] 2025-12-17 01:17:24,130 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 02:17:54] 2025-12-17 01:17:24,434 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-17 02:17:54] 2025-12-17 01:17:24,434 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-17 02:17:54] 2025-12-17 01:17:24,434 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 02:17:54] 2025-12-17 01:17:24,434 | INFO     | will abort loop
[2025-12-17 02:17:54] 2025-12-17 01:17:24,686 | INFO     | all data control threads have been joined
[2025-12-17 02:17:54] 2025-12-17 01:17:24,753 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 02:17:54] 2025-12-17 01:17:25,136 | INFO     | [job] retrieve thread has finished
[2025-12-17 02:17:54] 2025-12-17 01:17:25,136 | INFO     | [job] queue monitor thread has finished
[2025-12-17 02:17:54] 2025-12-17 01:17:25,261 | INFO     | [data] copytool_in thread has finished
[2025-12-17 02:17:54] 2025-12-17 01:17:25,399 | INFO     | all job control threads have been joined
[2025-12-17 02:17:54] 2025-12-17 01:17:25,439 | INFO     | [job] job monitor thread has finished
[2025-12-17 02:17:54] 2025-12-17 01:17:25,464 | INFO     | all payload control threads have been joined
[2025-12-17 02:17:54] 2025-12-17 01:17:25,471 | INFO     | [payload] validate_post thread has finished
[2025-12-17 02:17:54] 2025-12-17 01:17:25,490 | INFO     | [job] validate thread has finished
[2025-12-17 02:17:54] 2025-12-17 01:17:25,601 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 02:17:54] 2025-12-17 01:17:25,614 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 02:17:54] 2025-12-17 01:17:25,691 | INFO     | [data] control thread has finished
[2025-12-17 02:17:54] 2025-12-17 01:17:26,215 | INFO     | [payload] failed_post thread has finished
[2025-12-17 02:17:54] 2025-12-17 01:17:26,405 | INFO     | [job] control thread has finished
[2025-12-17 02:17:54] 2025-12-17 01:17:26,444 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 02:17:54] 2025-12-17 01:17:26,469 | INFO     | [payload] control thread has finished
[2025-12-17 02:17:54] 2025-12-17 01:17:26,517 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 02:17:54] 2025-12-17 01:17:26,760 | INFO     | [data] copytool_out thread has finished
[2025-12-17 02:17:54] 2025-12-17 01:17:27,281 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 02:17:54] 2025-12-17 01:17:31,288 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 02:17:54] 2025-12-17 01:17:42,700 | INFO     | [monitor] cgroup control has ended
[2025-12-17 02:17:54] 2025-12-17 01:17:43,706 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139764950591296)>', '<ExcThread(monitor, started 139764460148480)>']
[2025-12-17 02:17:54] 2025-12-17 01:17:48,731 | INFO     | all workflow threads have been joined
[2025-12-17 02:17:54] 2025-12-17 01:17:48,732 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 02:17:54] 2025-12-17 01:17:48,732 | INFO     | traces error code: 0
[2025-12-17 02:17:54] 2025-12-17 01:17:48,732 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 02:17:54] 2025-12-17 01:17:54,338 | INFO     | PID=801329 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-17 02:17:54] 2025-12-17 01:17:54,339 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 02:17:54] 2025-12-17 01:17:54,339 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 02:17:54] 2025-12-17 01:17:54,339 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 02:17:54] 2025-12-17 01:17:54,339 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 02:17:54] 2025-12-17 01:17:54,339 | INFO     | [monitor] control thread has ended
[2025-12-17 02:17:54] 2025-12-17 01:17:54,386 [wrapper] ==== pilot stdout END ====
[2025-12-17 02:17:54] 2025-12-17 01:17:54,388 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 02:17:54] 2025-12-17 01:17:54,391 [wrapper] pilotpid: 801329
[2025-12-17 02:17:54] 2025-12-17 01:17:54,393 [wrapper] Pilot exit status: 0
[2025-12-17 02:17:54] 2025-12-17 01:17:54,401 [wrapper] pandaids: 6930660474
[2025-12-17 02:17:54] 2025-12-17 01:17:54,418 [wrapper] cleanup supervisor_pilot  819653 801330
[2025-12-17 02:17:54] 2025-12-17 01:17:54,421 [wrapper] Test setup, not cleaning
[2025-12-17 02:17:54] 2025-12-17 01:17:54,423 [wrapper] apfmon messages muted
[2025-12-17 02:17:54] 2025-12-17 01:17:54,426 [wrapper] ==== wrapper stdout END ====
[2025-12-17 02:17:54] 2025-12-17 01:17:54,428 [wrapper] ==== wrapper stderr END ====
[2025-12-17 02:17:54]  *** Error codes and diagnostics ***
[2025-12-17 02:17:54]     "exeErrorCode": 0,
[2025-12-17 02:17:54]     "exeErrorDiag": "",
[2025-12-17 02:17:54]     "pilotErrorCode": 0,
[2025-12-17 02:17:54]     "pilotErrorDiag": "",
[2025-12-17 02:17:54]  *** Listing of results directory ***
[2025-12-17 02:17:54] total 337268
[2025-12-17 02:17:54] -rw-r--r-- 1 boinc boinc    579449 Dec 16 05:16 pilot3.tar.gz
[2025-12-17 02:17:54] -rwx------ 1 boinc boinc     36322 Dec 16 05:19 runpilot2-wrapper.sh
[2025-12-17 02:17:54] -rw-r--r-- 1 boinc boinc      5112 Dec 16 05:22 queuedata.json
[2025-12-17 02:17:54] -rw-r--r-- 1 boinc boinc       100 Dec 17 00:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 02:17:54] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 00:51 run_atlas
[2025-12-17 02:17:54] -rw-r--r-- 1 boinc boinc       105 Dec 17 00:51 job.xml
[2025-12-17 02:17:54] -rw-r--r-- 2 boinc boinc 190229225 Dec 17 00:51 EVNT.47886829._000459.pool.root.1
[2025-12-17 02:17:54] -rw-r--r-- 2 boinc boinc    592420 Dec 17 00:51 input.tar.gz
[2025-12-17 02:17:54] -rw-r--r-- 2 boinc boinc     15847 Dec 17 00:51 start_atlas.sh
[2025-12-17 02:17:54] drwxrwx--x 2 boinc boinc      4096 Dec 17 00:51 shared
[2025-12-17 02:17:54] -rw-r--r-- 1 boinc boinc         0 Dec 17 00:51 boinc_setup_complete
[2025-12-17 02:17:54] -rw-r--r-- 1 boinc boinc      6447 Dec 17 00:51 init_data.xml
[2025-12-17 02:17:54] -rw-r--r-- 1 boinc boinc         0 Dec 17 00:51 boinc_lockfile
[2025-12-17 02:17:54] -rw-r--r-- 1 boinc boinc      2539 Dec 17 00:51 pandaJob.out
[2025-12-17 02:17:54] -rw------- 1 boinc boinc    987401 Dec 17 00:51 agis_schedconf.cvmfs.json
[2025-12-17 02:17:54] -rw------- 1 boinc boinc   1516240 Dec 17 00:51 agis_ddmendpoints.agis.ALL.json
[2025-12-17 02:17:54] drwx------ 5 boinc boinc      4096 Dec 17 00:51 pilot3
[2025-12-17 02:17:54] -rw------- 1 boinc boinc 149194919 Dec 17 02:17 HITS.47886831._011151.pool.root.1
[2025-12-17 02:17:54] -rw------- 1 boinc boinc        95 Dec 17 02:17 pilot_heartbeat.json
[2025-12-17 02:17:54] -rw-r--r-- 1 boinc boinc       529 Dec 17 02:17 boinc_task_state.xml
[2025-12-17 02:17:54] -rw------- 1 boinc boinc      1030 Dec 17 02:17 memory_monitor_summary.json
[2025-12-17 02:17:54] -rw------- 1 boinc boinc    268318 Dec 17 02:17 log.47886831._011151.job.log.tgz.1
[2025-12-17 02:17:54] -rw------- 1 boinc boinc      7752 Dec 17 02:17 heartbeat.json
[2025-12-17 02:17:54] -rw-r--r-- 1 boinc boinc        27 Dec 17 02:17 wrapper_checkpoint.txt
[2025-12-17 02:17:54] -rw-r--r-- 1 boinc boinc      8192 Dec 17 02:17 boinc_mmap_file
[2025-12-17 02:17:54] -rw------- 1 boinc boinc       746 Dec 17 02:17 pilotlog.txt
[2025-12-17 02:17:54] -rw------- 1 boinc boinc    752678 Dec 17 02:17 log.47886831._011151.job.log.1
[2025-12-17 02:17:54] -rw------- 1 boinc boinc       357 Dec 17 02:17 output.list
[2025-12-17 02:17:54] -rw-r--r-- 1 boinc boinc       620 Dec 17 02:17 runtime_log
[2025-12-17 02:17:54] -rw------- 1 boinc boinc   1044480 Dec 17 02:17 result.tar.gz
[2025-12-17 02:17:54] -rw-r--r-- 1 boinc boinc      8902 Dec 17 02:17 runtime_log.err
[2025-12-17 02:17:54] -rw------- 1 boinc boinc       659 Dec 17 02:17 nz8NDmYibp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMQZKDm3Ew4To.diag
[2025-12-17 02:17:54] -rw-r--r-- 1 boinc boinc     11947 Dec 17 02:17 stderr.txt
[2025-12-17 02:17:54] HITS file was successfully produced:
[2025-12-17 02:17:54] -rw------- 1 boinc boinc 149194919 Dec 17 02:17 shared/HITS.pool.root.1
[2025-12-17 02:17:54]  *** Contents of shared directory: ***
[2025-12-17 02:17:54] total 333092
[2025-12-17 02:17:54] -rw-r--r-- 2 boinc boinc 190229225 Dec 17 00:51 ATLAS.root_0
[2025-12-17 02:17:54] -rw-r--r-- 2 boinc boinc    592420 Dec 17 00:51 input.tar.gz
[2025-12-17 02:17:54] -rw-r--r-- 2 boinc boinc     15847 Dec 17 00:51 start_atlas.sh
[2025-12-17 02:17:54] -rw------- 1 boinc boinc 149194919 Dec 17 02:17 HITS.pool.root.1
[2025-12-17 02:17:54] -rw------- 1 boinc boinc   1044480 Dec 17 02:17 result.tar.gz
02:17:56 (797603): run_atlas exited; CPU time 14791.805537
02:17:56 (797603): called boinc_finish(0)

</stderr_txt>
]]>

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