Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:02:39 (7883): wrapper (7.7.26015): starting
11:02:39 (7883): wrapper: running run_atlas (--nthreads 12)
[2025-12-16 11:02:39] Arguments: --nthreads 12
[2025-12-16 11:02:39] Threads: 12
[2025-12-16 11:02:39] Checking for CVMFS
[2025-12-16 11:02:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 11:02:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 11:02:39] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 11:02:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 11:02:40] 2.11.2.0 2998 132409 97692 154075 2 59 12690701 20275200 1 130560 0 56600657 99.957 5841324 35509 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-16 11:02:40] CVMFS is ok
[2025-12-16 11:02:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 11:02:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 11:02:40] Further information can be found at the LHC@home message board.
[2025-12-16 11:02:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 11:02:40] Checking for apptainer binary...
[2025-12-16 11:02:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 11:02:40] Running /usr/bin/apptainer --version
[2025-12-16 11:02:40] apptainer version 1.3.2-1.el7
[2025-12-16 11:02:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 11:02:41] c-205-12.aglt2.org
[2025-12-16 11:02:41] apptainer works
[2025-12-16 11:02:41] Set ATHENA_PROC_NUMBER=12
[2025-12-16 11:02:41] Set ATHENA_CORE_NUMBER=12
[2025-12-16 11:02:41] Starting ATLAS job with PandaID=6930759003
[2025-12-16 11:02:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 12:21:08]  *** The last 200 lines of the pilot log: ***
[2025-12-16 12:21:08]  protocol_id=None
[2025-12-16 12:21:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-16 12:21:08]  replicas=None
[2025-12-16 12:21:08]  scope=mc23_13p6TeV
[2025-12-16 12:21:08]  status=None
[2025-12-16 12:21:08]  status_code=0
[2025-12-16 12:21:08]  storage_token=
[2025-12-16 12:21:08]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6930759003/log.47886831._011708.job.log.tgz.1
[2025-12-16 12:21:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a8/7d/log.47886831._011708.job.log.tgz.1
[2025-12-16 12:21:08]  workdir=None
[2025-12-16 12:21:08] ]
[2025-12-16 12:21:08] 2025-12-16 17:20:03,272 | INFO     | transferring file log.47886831._011708.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6930759003/log.47886831._011708.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-16 12:21:08] 2025-12-16 17:20:03,273 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6930759003/log.47886831._011708.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886831._011708.job
[2025-12-16 12:21:08] 2025-12-16 17:20:03,295 | INFO     | adding to output.list: log.47886831._011708.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a8/7d/log.47886831._011708.job.log.tg
[2025-12-16 12:21:08] 2025-12-16 17:20:03,296 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-16 12:21:08] 2025-12-16 17:20:03,296 | INFO     | summary of transferred files:
[2025-12-16 12:21:08] 2025-12-16 17:20:03,296 | INFO     |  -- lfn=log.47886831._011708.job.log.tgz.1, status_code=0, status=transferred
[2025-12-16 12:21:08] 2025-12-16 17:20:03,296 | INFO     | stage-out finished correctly
[2025-12-16 12:21:08] 2025-12-16 17:20:04,634 | INFO     | time since job start (4628s) is within the limit (174528.0s)
[2025-12-16 12:21:08] 2025-12-16 17:20:06,027 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-16 12:21:08] 2025-12-16 17:20:06,639 | INFO     | time since job start (4630s) is within the limit (174528.0s)
[2025-12-16 12:21:08] 2025-12-16 17:20:07,528 | INFO     | job 6930759003 has state=finished
[2025-12-16 12:21:08] 2025-12-16 17:20:07,529 | INFO     | preparing for final server update for job 6930759003 in state='finished'
[2025-12-16 12:21:08] 2025-12-16 17:20:07,529 | INFO     | this job has now completed (state=finished)
[2025-12-16 12:21:08] 2025-12-16 17:20:07,529 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-16 12:21:08] 2025-12-16 17:20:07,529 | INFO     | log transfer has been attempted: DONE
[2025-12-16 12:21:08] 2025-12-16 17:20:07,530 | INFO     | job 6930759003 has finished - writing final server update
[2025-12-16 12:21:08] 2025-12-16 17:20:07,530 | INFO     | total number of processed events: 400 (read)
[2025-12-16 12:21:08] 2025-12-16 17:20:07,531 | INFO     | executing command: lscpu
[2025-12-16 12:21:08] 2025-12-16 17:20:07,555 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-16 12:21:08] 2025-12-16 17:20:08,402 | WARNING  | process 17966 can no longer be monitored (due to stat problems) - aborting
[2025-12-16 12:21:08] 2025-12-16 17:20:08,402 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6930759003/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 12:21:08] 2025-12-16 17:20:08,494 | INFO     | number of running child processes to parent process 17966: 1
[2025-12-16 12:21:08] 2025-12-16 17:20:08,495 | INFO     | maximum number of monitored processes: 6
[2025-12-16 12:21:08] 2025-12-16 17:20:08,645 | INFO     | time since job start (4632s) is within the limit (174528.0s)
[2025-12-16 12:21:08] 2025-12-16 17:20:10,650 | INFO     | time since job start (4634s) is within the limit (174528.0s)
[2025-12-16 12:21:08] 2025-12-16 17:20:10,998 | INFO     | monitor loop #344: job 0:6930759003 is in state 'finished'
[2025-12-16 12:21:08] 2025-12-16 17:20:10,998 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 12:21:08] 2025-12-16 17:20:12,239 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-16 12:21:08] 2025-12-16 17:20:12,242 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-12-16 12:21:08] 2025-12-16 17:20:12,245 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6930759003/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 12:21:08] 2025-12-16 17:20:12,246 | INFO     | extracted standard info from prmon json
[2025-12-16 12:21:08] 2025-12-16 17:20:12,246 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 12:21:08] 2025-12-16 17:20:12,246 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 12:21:08] 2025-12-16 17:20:12,246 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 12:21:08] 2025-12-16 17:20:12,246 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 12:21:08] 2025-12-16 17:20:12,249 | INFO     | fitting pss+swap vs Time
[2025-12-16 12:21:08] 2025-12-16 17:20:12,249 | INFO     | sum of square deviations: 101843770.0
[2025-12-16 12:21:08] 2025-12-16 17:20:12,249 | INFO     | sum of deviations: 1106655839.0
[2025-12-16 12:21:08] 2025-12-16 17:20:12,250 | INFO     | mean x: 1765903384.0
[2025-12-16 12:21:08] 2025-12-16 17:20:12,250 | INFO     | mean y: 2667033.5942028984
[2025-12-16 12:21:08] 2025-12-16 17:20:12,250 | INFO     | intersect: -19186010791.406372
[2025-12-16 12:21:08] 2025-12-16 17:20:12,250 | INFO     | chi2: 0.031310265348666724
[2025-12-16 12:21:08] 2025-12-16 17:20:12,251 | INFO     | current memory leak: 10.87 B/s (using 69 data points, chi2=0.03)
[2025-12-16 12:21:08] 2025-12-16 17:20:12,251 | INFO     | could have reported an average CPU frequency of 2035 MHz (6 samples)
[2025-12-16 12:21:08] 2025-12-16 17:20:12,251 | INFO     | ..............................
[2025-12-16 12:21:08] 2025-12-16 17:20:12,251 | INFO     | . Timing measurements:
[2025-12-16 12:21:08] 2025-12-16 17:20:12,251 | INFO     | . get job = 0 s
[2025-12-16 12:21:08] 2025-12-16 17:20:12,251 | INFO     | . initial setup = 2 s
[2025-12-16 12:21:08] 2025-12-16 17:20:12,251 | INFO     | . payload setup = 7 s
[2025-12-16 12:21:08] 2025-12-16 17:20:12,251 | INFO     | . stage-in = 0 s
[2025-12-16 12:21:08] 2025-12-16 17:20:12,252 | INFO     | . payload execution = 4598 s
[2025-12-16 12:21:08] 2025-12-16 17:20:12,252 | INFO     | . stage-out = 0 s
[2025-12-16 12:21:08] 2025-12-16 17:20:12,252 | INFO     | . log creation = 0 s
[2025-12-16 12:21:08] 2025-12-16 17:20:12,252 | INFO     | ..............................
[2025-12-16 12:21:08] 2025-12-16 17:20:12,638 | INFO     | 
[2025-12-16 12:21:08] 2025-12-16 17:20:12,638 | INFO     | job summary report
[2025-12-16 12:21:08] 2025-12-16 17:20:12,638 | INFO     | --------------------------------------------------
[2025-12-16 12:21:08] 2025-12-16 17:20:12,638 | INFO     | PanDA job id: 6930759003
[2025-12-16 12:21:08] 2025-12-16 17:20:12,638 | INFO     | task id: 47886831
[2025-12-16 12:21:08] 2025-12-16 17:20:12,638 | INFO     | errors: (none)
[2025-12-16 12:21:08] 2025-12-16 17:20:12,639 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 12:21:08] 2025-12-16 17:20:12,639 | INFO     | pilot state: finished 
[2025-12-16 12:21:08] 2025-12-16 17:20:12,639 | INFO     | transexitcode: 0
[2025-12-16 12:21:08] 2025-12-16 17:20:12,639 | INFO     | exeerrorcode: 0
[2025-12-16 12:21:08] 2025-12-16 17:20:12,639 | INFO     | exeerrordiag: 
[2025-12-16 12:21:08] 2025-12-16 17:20:12,639 | INFO     | exitcode: 0
[2025-12-16 12:21:08] 2025-12-16 17:20:12,639 | INFO     | exitmsg: OK
[2025-12-16 12:21:08] 2025-12-16 17:20:12,640 | INFO     | cpuconsumptiontime: 50237 s
[2025-12-16 12:21:08] 2025-12-16 17:20:12,640 | INFO     | nevents: 400
[2025-12-16 12:21:08] 2025-12-16 17:20:12,640 | INFO     | neventsw: 0
[2025-12-16 12:21:08] 2025-12-16 17:20:12,640 | INFO     | pid: 17966
[2025-12-16 12:21:08] 2025-12-16 17:20:12,640 | INFO     | pgrp: 17966
[2025-12-16 12:21:08] 2025-12-16 17:20:12,640 | INFO     | corecount: 12
[2025-12-16 12:21:08] 2025-12-16 17:20:12,640 | INFO     | event service: False
[2025-12-16 12:21:08] 2025-12-16 17:20:12,641 | INFO     | sizes: {0: 2283993, 5: 2284255, 11: 2284311, 4609: 2310436, 4610: 2319434, 4613: 2319490, 4619: 2319812}
[2025-12-16 12:21:08] 2025-12-16 17:20:12,641 | INFO     | --------------------------------------------------
[2025-12-16 12:21:08] 2025-12-16 17:20:12,641 | INFO     | 
[2025-12-16 12:21:08] 2025-12-16 17:20:12,641 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-16 12:21:08] 2025-12-16 17:20:12,652 | INFO     | time since job start (4636s) is within the limit (174528.0s)
[2025-12-16 12:21:08] 2025-12-16 17:20:12,664 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 12:21:08] 2025-12-16 17:20:12,664 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 12:21:08] 2025-12-16 17:20:12,664 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 12:21:08] 2025-12-16 17:20:12,665 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 12:21:08] 2025-12-16 17:20:12,665 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 12:21:08] 2025-12-16 17:20:12,665 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 12:21:08] 2025-12-16 17:20:12,665 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 12:21:08] 2025-12-16 17:20:12,665 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 12:21:08] 2025-12-16 17:20:12,665 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 12:21:08] 2025-12-16 17:20:12,665 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 12:21:08] 2025-12-16 17:20:12,666 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 12:21:08] 2025-12-16 17:20:12,666 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 12:21:08] 2025-12-16 17:20:12,666 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 12:21:08] 2025-12-16 17:20:12,666 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 12:21:08] 2025-12-16 17:20:12,666 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 12:21:08] 2025-12-16 17:20:12,666 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 12:21:08] 2025-12-16 17:20:12,666 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 12:21:08] 2025-12-16 17:20:12,667 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 12:21:08] 2025-12-16 17:20:12,667 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 12:21:08] 2025-12-16 17:20:12,667 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 12:21:08] 2025-12-16 17:20:12,667 | INFO     | job 6930759003 has completed (purged errors)
[2025-12-16 12:21:08] 2025-12-16 17:20:12,667 | INFO     | overall cleanup function is called
[2025-12-16 12:21:08] 2025-12-16 17:20:13,675 | INFO     | --- collectZombieJob: --- 10, [17966]
[2025-12-16 12:21:08] 2025-12-16 17:20:13,675 | INFO     | zombie collector waiting for pid 17966
[2025-12-16 12:21:08] 2025-12-16 17:20:13,676 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 12:21:08] 2025-12-16 17:20:13,676 | INFO     | collected zombie processes
[2025-12-16 12:21:08] 2025-12-16 17:20:13,676 | INFO     | will attempt to kill all subprocesses of pid=17966
[2025-12-16 12:21:08] 2025-12-16 17:20:13,766 | INFO     | process IDs to be killed: [17966] (in reverse order)
[2025-12-16 12:21:08] 2025-12-16 17:20:13,815 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 12:21:08] 2025-12-16 17:20:13,815 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 12:21:08] 2025-12-16 17:20:13,819 | INFO     | did not find any defunct processes belonging to 17966
[2025-12-16 12:21:08] 2025-12-16 17:20:13,822 | INFO     | did not find any defunct processes belonging to 17966
[2025-12-16 12:21:08] 2025-12-16 17:20:13,822 | INFO     | ready for new job
[2025-12-16 12:21:08] 2025-12-16 17:20:13,822 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 12:21:08] 2025-12-16 17:20:13,823 | INFO     | ***************************************
[2025-12-16 12:21:08] 2025-12-16 17:20:13,823 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 12:21:08] 2025-12-16 17:20:13,823 | INFO     | ***************************************
[2025-12-16 12:21:08] 2025-12-16 17:20:13,823 | INFO     | 
[2025-12-16 12:21:08] 2025-12-16 17:20:13,824 | INFO     | architecture information:
[2025-12-16 12:21:08] 2025-12-16 17:20:13,824 | INFO     | executing command: cat /etc/os-release
[2025-12-16 12:21:08] 2025-12-16 17:20:13,839 | INFO     | cat /etc/os-release:
[2025-12-16 12:21:08] NAME="CentOS Linux"
[2025-12-16 12:21:08] VERSION="7 (Core)"
[2025-12-16 12:21:08] ID="centos"
[2025-12-16 12:21:08] ID_LIKE="rhel fedora"
[2025-12-16 12:21:08] VERSION_ID="7"
[2025-12-16 12:21:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 12:21:08] ANSI_COLOR="0;31"
[2025-12-16 12:21:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 12:21:08] HOME_URL="https://www.centos.org/"
[2025-12-16 12:21:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 12:21:08] 
[2025-12-16 12:21:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 12:21:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 12:21:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 12:21:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 12:21:08] 
[2025-12-16 12:21:08] 2025-12-16 17:20:13,839 | INFO     | ***************************************
[2025-12-16 12:21:08] 2025-12-16 17:20:14,342 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-16 12:21:08] 2025-12-16 17:20:14,359 | INFO     | sufficient remaining disk space (29456596992 B)
[2025-12-16 12:21:08] 2025-12-16 17:20:14,359 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 12:21:08] 2025-12-16 17:20:14,359 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 12:21:08] 2025-12-16 17:20:14,360 | INFO     | update_server=False
[2025-12-16 12:21:08] 2025-12-16 17:20:14,360 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 12:21:08] 2025-12-16 17:20:14,360 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-16 12:21:08] 2025-12-16 17:20:14,360 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 12:21:08] 2025-12-16 17:20:14,361 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 12:21:08] 2025-12-16 17:20:14,361 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 12:21:08] 2025-12-16 17:20:14,361 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 12:21:08] 2025-12-16 17:20:14,506 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 12:21:08] 2025-12-16 17:20:14,506 | INFO     | aborting loop
[2025-12-16 12:21:08] 2025-12-16 17:20:15,365 | INFO     | [job] retrieve thread has finished
[2025-12-16 12:21:08] 2025-12-16 17:20:15,376 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 12:21:08] 2025-12-16 17:20:15,399 | INFO     | all data control threads have been joined
[2025-12-16 12:21:08] 2025-12-16 17:20:15,511 | INFO     | [job] job monitor thread has finished
[2025-12-16 12:21:08] 2025-12-16 17:20:15,584 | INFO     | all payload control threads have been joined
[2025-12-16 12:21:08] 2025-12-16 17:20:15,689 | INFO     | all job control threads have been joined
[2025-12-16 12:21:08] 2025-12-16 17:20:15,711 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 12:21:08] 2025-12-16 17:20:15,724 | INFO     | [payload] validate_post thread has finished
[2025-12-16 12:21:08] 2025-12-16 17:20:16,143 | INFO     | [data] copytool_in thread has finished
[2025-12-16 12:21:08] 2025-12-16 17:20:16,352 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 12:21:08] 2025-12-16 17:20:16,366 | INFO     | [data] copytool_out thread has finished
[2025-12-16 12:21:08] 2025-12-16 17:20:16,404 | INFO     | [data] control thread has finished
[2025-12-16 12:21:08] 2025-12-16 17:20:16,452 | INFO     | [payload] failed_post thread has finished
[2025-12-16 12:21:08] 2025-12-16 17:20:16,590 | INFO     | [payload] control thread has finished
[2025-12-16 12:21:08] 2025-12-16 17:20:16,613 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 12:21:08] 2025-12-16 17:20:16,621 | INFO     | [job] validate thread has finished
[2025-12-16 12:21:08] 2025-12-16 17:20:16,695 | INFO     | [job] control thread has finished
[2025-12-16 12:21:08] 2025-12-16 17:20:16,826 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 12:21:08] 2025-12-16 17:20:17,342 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 12:21:08] 2025-12-16 17:20:18,347 | INFO     | [job] queue monitor thread has finished
[2025-12-16 12:21:08] 2025-12-16 17:20:20,619 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 12:21:08] 2025-12-16 17:21:03,607 | INFO     | [monitor] cgroup control has ended
[2025-12-16 12:21:08] 2025-12-16 17:21:03,663 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139978570127168)>', '<ExcThread(monitor, started 139977572722432)>']
[2025-12-16 12:21:08] 2025-12-16 17:21:04,603 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 12:21:08] 2025-12-16 17:21:04,603 | INFO     | [monitor] control thread has ended
[2025-12-16 12:21:08] 2025-12-16 17:21:08,675 | INFO     | all workflow threads have been joined
[2025-12-16 12:21:08] 2025-12-16 17:21:08,675 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 12:21:08] 2025-12-16 17:21:08,686 | INFO     | traces error code: 0
[2025-12-16 12:21:08] 2025-12-16 17:21:08,686 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 12:21:08] 2025-12-16 17:21:08,770 [wrapper] ==== pilot stdout END ====
[2025-12-16 12:21:08] 2025-12-16 17:21:08,774 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 12:21:08] 2025-12-16 17:21:08,778 [wrapper] pilotpid: 11557
[2025-12-16 12:21:08] 2025-12-16 17:21:08,782 [wrapper] Pilot exit status: 0
[2025-12-16 12:21:08] 2025-12-16 17:21:08,796 [wrapper] pandaids: 6930759003
[2025-12-16 12:21:08] 2025-12-16 17:21:08,843 [wrapper] cleanup supervisor_pilot 13411 11558
[2025-12-16 12:21:08] 2025-12-16 17:21:08,847 [wrapper] Test setup, not cleaning
[2025-12-16 12:21:08] 2025-12-16 17:21:08,851 [wrapper] apfmon messages muted
[2025-12-16 12:21:08] 2025-12-16 17:21:08,855 [wrapper] ==== wrapper stdout END ====
[2025-12-16 12:21:08] 2025-12-16 17:21:08,859 [wrapper] ==== wrapper stderr END ====
[2025-12-16 12:21:08]  *** Error codes and diagnostics ***
[2025-12-16 12:21:08]     "exeErrorCode": 0,
[2025-12-16 12:21:08]     "exeErrorDiag": "",
[2025-12-16 12:21:08]     "pilotErrorCode": 0,
[2025-12-16 12:21:08]     "pilotErrorDiag": "",
[2025-12-16 12:21:08]  *** Listing of results directory ***
[2025-12-16 12:21:08] total 337684
[2025-12-16 12:21:08] -rw-r--r-- 1 boincer umatlas    579449 Dec 15 23:16 pilot3.tar.gz
[2025-12-16 12:21:08] -rwx------ 1 boincer umatlas     36322 Dec 15 23:17 runpilot2-wrapper.sh
[2025-12-16 12:21:08] -rw-r--r-- 1 boincer umatlas      5112 Dec 15 23:17 queuedata.json
[2025-12-16 12:21:08] -rw-r--r-- 1 boincer umatlas       100 Dec 16 11:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 12:21:08] -rwxr-xr-x 1 boincer umatlas      7986 Dec 16 11:02 run_atlas
[2025-12-16 12:21:08] -rw-r--r-- 1 boincer umatlas       105 Dec 16 11:02 job.xml
[2025-12-16 12:21:08] -rw-r--r-- 2 boincer umatlas 191487709 Dec 16 11:02 EVNT.47886829._000471.pool.root.1
[2025-12-16 12:21:08] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 11:02 start_atlas.sh
[2025-12-16 12:21:08] drwxrwx--x 2 boincer umatlas      4096 Dec 16 11:02 shared
[2025-12-16 12:21:08] -rw-r--r-- 2 boincer umatlas    592414 Dec 16 11:02 input.tar.gz
[2025-12-16 12:21:08] -rw-r--r-- 1 boincer umatlas         0 Dec 16 11:02 boinc_lockfile
[2025-12-16 12:21:08] -rw-r--r-- 1 boincer umatlas      2539 Dec 16 11:02 pandaJob.out
[2025-12-16 12:21:08] -rw------- 1 boincer umatlas        57 Dec 16 11:02 setup.sh.local
[2025-12-16 12:21:08] -rw------- 1 boincer umatlas    987386 Dec 16 11:02 agis_schedconf.cvmfs.json
[2025-12-16 12:21:08] -rw------- 1 boincer umatlas   1516240 Dec 16 11:02 agis_ddmendpoints.agis.ALL.json
[2025-12-16 12:21:08] drwx------ 5 boincer umatlas      4096 Dec 16 11:02 pilot3
[2025-12-16 12:21:08] -rw-r--r-- 1 boincer umatlas      5953 Dec 16 12:19 init_data.xml
[2025-12-16 12:21:08] -rw------- 1 boincer umatlas 148272479 Dec 16 12:19 HITS.47886831._011708.pool.root.1
[2025-12-16 12:21:08] -rw------- 1 boincer umatlas        95 Dec 16 12:19 pilot_heartbeat.json
[2025-12-16 12:21:08] -rw------- 1 boincer umatlas      1046 Dec 16 12:19 memory_monitor_summary.json
[2025-12-16 12:21:08] -rw------- 1 boincer umatlas    387994 Dec 16 12:20 log.47886831._011708.job.log.tgz.1
[2025-12-16 12:21:08] -rw-r--r-- 1 boincer umatlas       530 Dec 16 12:20 boinc_task_state.xml
[2025-12-16 12:21:08] -rw------- 1 boincer umatlas      7842 Dec 16 12:20 heartbeat.json
[2025-12-16 12:21:08] -rw------- 1 boincer umatlas      4552 Dec 16 12:21 pilotlog.txt
[2025-12-16 12:21:08] -rw-r--r-- 1 boincer umatlas        27 Dec 16 12:21 wrapper_checkpoint.txt
[2025-12-16 12:21:08] -rw------- 1 boincer umatlas    670439 Dec 16 12:21 log.47886831._011708.job.log.1
[2025-12-16 12:21:08] -rw------- 1 boincer umatlas       357 Dec 16 12:21 output.list
[2025-12-16 12:21:08] -rw-r--r-- 1 boincer umatlas       620 Dec 16 12:21 runtime_log
[2025-12-16 12:21:08] -rw------- 1 boincer umatlas   1075200 Dec 16 12:21 result.tar.gz
[2025-12-16 12:21:08] -rw-r--r-- 1 boincer umatlas      9344 Dec 16 12:21 runtime_log.err
[2025-12-16 12:21:08] -rw------- 1 boincer umatlas       659 Dec 16 12:21 jeZLDmyfbp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmotUKDmDEvoRm.diag
[2025-12-16 12:21:08] -rw-r--r-- 1 boincer umatlas      8192 Dec 16 12:21 boinc_mmap_file
[2025-12-16 12:21:08] -rw-r--r-- 1 boincer umatlas     21771 Dec 16 12:21 stderr.txt
[2025-12-16 12:21:09] HITS file was successfully produced:
[2025-12-16 12:21:09] -rw------- 1 boincer umatlas 148272479 Dec 16 12:19 shared/HITS.pool.root.1
[2025-12-16 12:21:09]  *** Contents of shared directory: ***
[2025-12-16 12:21:09] total 333452
[2025-12-16 12:21:09] -rw-r--r-- 2 boincer umatlas 191487709 Dec 16 11:02 ATLAS.root_0
[2025-12-16 12:21:09] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 11:02 start_atlas.sh
[2025-12-16 12:21:09] -rw-r--r-- 2 boincer umatlas    592414 Dec 16 11:02 input.tar.gz
[2025-12-16 12:21:09] -rw------- 1 boincer umatlas 148272479 Dec 16 12:19 HITS.pool.root.1
[2025-12-16 12:21:09] -rw------- 1 boincer umatlas   1075200 Dec 16 12:21 result.tar.gz
12:21:10 (7883): run_atlas exited; CPU time 50203.487095
12:21:10 (7883): called boinc_finish(0)

</stderr_txt>
]]>

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