Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:36:08 (3936): wrapper (7.7.26015): starting
10:36:08 (3936): wrapper: running run_atlas (--nthreads 12)
[2025-12-16 10:36:08] Arguments: --nthreads 12
[2025-12-16 10:36:08] Threads: 12
[2025-12-16 10:36:08] Checking for CVMFS
[2025-12-16 10:36:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 10:36:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 10:36:08] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 10:36:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 10:36:08] 2.11.2.0 2984 316623 92540 154075 3 58 17637699 20275200 1 130560 1 141450318 99.974 17760858 14935 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-16 10:36:08] CVMFS is ok
[2025-12-16 10:36:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 10:36:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 10:36:08] Further information can be found at the LHC@home message board.
[2025-12-16 10:36:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 10:36:08] Checking for apptainer binary...
[2025-12-16 10:36:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 10:36:08] Running /usr/bin/apptainer --version
[2025-12-16 10:36:08] apptainer version 1.3.2-1.el7
[2025-12-16 10:36:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 10:36:10] c-205-26.aglt2.org
[2025-12-16 10:36:10] apptainer works
[2025-12-16 10:36:10] Set ATHENA_PROC_NUMBER=12
[2025-12-16 10:36:10] Set ATHENA_CORE_NUMBER=12
[2025-12-16 10:36:10] Starting ATLAS job with PandaID=6931013665
[2025-12-16 10:36:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 11:55:39]  *** The last 200 lines of the pilot log: ***
[2025-12-16 11:55:39]  protocol_id=None
[2025-12-16 11:55:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-16 11:55:39]  replicas=None
[2025-12-16 11:55:39]  scope=mc23_13p6TeV
[2025-12-16 11:55:39]  status=None
[2025-12-16 11:55:39]  status_code=0
[2025-12-16 11:55:39]  storage_token=
[2025-12-16 11:55:39]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6931013665/log.47886933._006909.job.log.tgz.1
[2025-12-16 11:55:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/49/7d/log.47886933._006909.job.log.tgz.1
[2025-12-16 11:55:39]  workdir=None
[2025-12-16 11:55:39] ]
[2025-12-16 11:55:39] 2025-12-16 16:54:29,806 | INFO     | transferring file log.47886933._006909.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6931013665/log.47886933._006909.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-16 11:55:39] 2025-12-16 16:54:29,807 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6931013665/log.47886933._006909.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886933._006909.job
[2025-12-16 11:55:39] 2025-12-16 16:54:29,831 | INFO     | adding to output.list: log.47886933._006909.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/49/7d/log.47886933._006909.job.log.tg
[2025-12-16 11:55:39] 2025-12-16 16:54:29,832 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-16 11:55:39] 2025-12-16 16:54:29,832 | INFO     | summary of transferred files:
[2025-12-16 11:55:39] 2025-12-16 16:54:29,832 | INFO     |  -- lfn=log.47886933._006909.job.log.tgz.1, status_code=0, status=transferred
[2025-12-16 11:55:39] 2025-12-16 16:54:29,832 | INFO     | stage-out finished correctly
[2025-12-16 11:55:39] 2025-12-16 16:54:30,913 | INFO     | time since job start (4685s) is within the limit (174528.0s)
[2025-12-16 11:55:39] 2025-12-16 16:54:31,572 | INFO     | monitor loop #351: job 0:6931013665 is in state 'finished'
[2025-12-16 11:55:39] 2025-12-16 16:54:31,573 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 11:55:39] 2025-12-16 16:54:32,918 | INFO     | time since job start (4687s) is within the limit (174528.0s)
[2025-12-16 11:55:39] 2025-12-16 16:54:33,384 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-16 11:55:39] 2025-12-16 16:54:33,460 | INFO     | job 6931013665 has state=finished
[2025-12-16 11:55:39] 2025-12-16 16:54:33,460 | INFO     | preparing for final server update for job 6931013665 in state='finished'
[2025-12-16 11:55:39] 2025-12-16 16:54:33,461 | INFO     | this job has now completed (state=finished)
[2025-12-16 11:55:39] 2025-12-16 16:54:33,461 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-16 11:55:39] 2025-12-16 16:54:33,461 | INFO     | log transfer has been attempted: DONE
[2025-12-16 11:55:39] 2025-12-16 16:54:33,461 | INFO     | job 6931013665 has finished - writing final server update
[2025-12-16 11:55:39] 2025-12-16 16:54:33,462 | INFO     | total number of processed events: 400 (read)
[2025-12-16 11:55:39] 2025-12-16 16:54:33,463 | INFO     | executing command: lscpu
[2025-12-16 11:55:39] 2025-12-16 16:54:33,489 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-16 11:55:39] 2025-12-16 16:54:34,074 | INFO     | monitor loop #352: job 0:6931013665 is in state 'finished'
[2025-12-16 11:55:39] 2025-12-16 16:54:34,074 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 11:55:39] 2025-12-16 16:54:34,924 | INFO     | time since job start (4689s) is within the limit (174528.0s)
[2025-12-16 11:55:39] 2025-12-16 16:54:36,577 | INFO     | monitor loop #353: job 0:6931013665 is in state 'finished'
[2025-12-16 11:55:39] 2025-12-16 16:54:36,577 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 11:55:39] 2025-12-16 16:54:36,930 | INFO     | time since job start (4691s) is within the limit (174528.0s)
[2025-12-16 11:55:39] 2025-12-16 16:54:38,212 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-16 11:55:39] 2025-12-16 16:54:38,216 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-12-16 11:55:39] 2025-12-16 16:54:38,217 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6931013665/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 11:55:39] 2025-12-16 16:54:38,218 | INFO     | extracted standard info from prmon json
[2025-12-16 11:55:39] 2025-12-16 16:54:38,218 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 11:55:39] 2025-12-16 16:54:38,218 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 11:55:39] 2025-12-16 16:54:38,219 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 11:55:39] 2025-12-16 16:54:38,219 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 11:55:39] 2025-12-16 16:54:38,220 | INFO     | fitting pss+swap vs Time
[2025-12-16 11:55:39] 2025-12-16 16:54:38,221 | INFO     | sum of square deviations: 106336877.5
[2025-12-16 11:55:39] 2025-12-16 16:54:38,221 | INFO     | sum of deviations: -7810449333.0
[2025-12-16 11:55:39] 2025-12-16 16:54:38,221 | INFO     | mean x: 1765901823.5
[2025-12-16 11:55:39] 2025-12-16 16:54:38,221 | INFO     | mean y: 2746482.057142857
[2025-12-16 11:55:39] 2025-12-16 16:54:38,221 | INFO     | intersect: 129708329754.41774
[2025-12-16 11:55:39] 2025-12-16 16:54:38,222 | INFO     | chi2: 0.08709806508263614
[2025-12-16 11:55:39] 2025-12-16 16:54:38,222 | INFO     | current memory leak: -73.45 B/s (using 70 data points, chi2=0.09)
[2025-12-16 11:55:39] 2025-12-16 16:54:38,222 | INFO     | could have reported an average CPU frequency of 2030 MHz (6 samples)
[2025-12-16 11:55:39] 2025-12-16 16:54:38,222 | INFO     | ..............................
[2025-12-16 11:55:39] 2025-12-16 16:54:38,222 | INFO     | . Timing measurements:
[2025-12-16 11:55:39] 2025-12-16 16:54:38,222 | INFO     | . get job = 0 s
[2025-12-16 11:55:39] 2025-12-16 16:54:38,223 | INFO     | . initial setup = 2 s
[2025-12-16 11:55:39] 2025-12-16 16:54:38,223 | INFO     | . payload setup = 7 s
[2025-12-16 11:55:39] 2025-12-16 16:54:38,223 | INFO     | . stage-in = 0 s
[2025-12-16 11:55:39] 2025-12-16 16:54:38,223 | INFO     | . payload execution = 4656 s
[2025-12-16 11:55:39] 2025-12-16 16:54:38,223 | INFO     | . stage-out = 0 s
[2025-12-16 11:55:39] 2025-12-16 16:54:38,223 | INFO     | . log creation = 0 s
[2025-12-16 11:55:39] 2025-12-16 16:54:38,223 | INFO     | ..............................
[2025-12-16 11:55:39] 2025-12-16 16:54:38,611 | INFO     | 
[2025-12-16 11:55:39] 2025-12-16 16:54:38,611 | INFO     | job summary report
[2025-12-16 11:55:39] 2025-12-16 16:54:38,612 | INFO     | --------------------------------------------------
[2025-12-16 11:55:39] 2025-12-16 16:54:38,612 | INFO     | PanDA job id: 6931013665
[2025-12-16 11:55:39] 2025-12-16 16:54:38,612 | INFO     | task id: 47886933
[2025-12-16 11:55:39] 2025-12-16 16:54:38,612 | INFO     | errors: (none)
[2025-12-16 11:55:39] 2025-12-16 16:54:38,612 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 11:55:39] 2025-12-16 16:54:38,613 | INFO     | pilot state: finished 
[2025-12-16 11:55:39] 2025-12-16 16:54:38,613 | INFO     | transexitcode: 0
[2025-12-16 11:55:39] 2025-12-16 16:54:38,613 | INFO     | exeerrorcode: 0
[2025-12-16 11:55:39] 2025-12-16 16:54:38,613 | INFO     | exeerrordiag: 
[2025-12-16 11:55:39] 2025-12-16 16:54:38,613 | INFO     | exitcode: 0
[2025-12-16 11:55:39] 2025-12-16 16:54:38,613 | INFO     | exitmsg: OK
[2025-12-16 11:55:39] 2025-12-16 16:54:38,614 | INFO     | cpuconsumptiontime: 50637 s
[2025-12-16 11:55:39] 2025-12-16 16:54:38,614 | INFO     | nevents: 400
[2025-12-16 11:55:39] 2025-12-16 16:54:38,614 | INFO     | neventsw: 0
[2025-12-16 11:55:39] 2025-12-16 16:54:38,614 | INFO     | pid: 14007
[2025-12-16 11:55:39] 2025-12-16 16:54:38,614 | INFO     | pgrp: 14007
[2025-12-16 11:55:39] 2025-12-16 16:54:38,614 | INFO     | corecount: 12
[2025-12-16 11:55:39] 2025-12-16 16:54:38,615 | INFO     | event service: False
[2025-12-16 11:55:39] 2025-12-16 16:54:38,615 | INFO     | sizes: {0: 2283965, 5: 2284227, 11: 2284283, 4667: 2310462, 4668: 2319460, 4672: 2319516, 4676: 2319838}
[2025-12-16 11:55:39] 2025-12-16 16:54:38,615 | INFO     | --------------------------------------------------
[2025-12-16 11:55:39] 2025-12-16 16:54:38,615 | INFO     | 
[2025-12-16 11:55:39] 2025-12-16 16:54:38,615 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-16 11:55:39] 2025-12-16 16:54:38,686 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 11:55:39] 2025-12-16 16:54:38,687 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 11:55:39] 2025-12-16 16:54:38,687 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 11:55:39] 2025-12-16 16:54:38,687 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 11:55:39] 2025-12-16 16:54:38,687 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 11:55:39] 2025-12-16 16:54:38,688 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 11:55:39] 2025-12-16 16:54:38,688 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 11:55:39] 2025-12-16 16:54:38,688 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 11:55:39] 2025-12-16 16:54:38,688 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 11:55:39] 2025-12-16 16:54:38,688 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 11:55:39] 2025-12-16 16:54:38,688 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 11:55:39] 2025-12-16 16:54:38,689 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 11:55:39] 2025-12-16 16:54:38,689 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 11:55:39] 2025-12-16 16:54:38,689 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 11:55:39] 2025-12-16 16:54:38,689 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 11:55:39] 2025-12-16 16:54:38,689 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 11:55:39] 2025-12-16 16:54:38,689 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 11:55:39] 2025-12-16 16:54:38,690 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 11:55:39] 2025-12-16 16:54:38,690 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 11:55:39] 2025-12-16 16:54:38,690 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 11:55:39] 2025-12-16 16:54:38,690 | INFO     | job 6931013665 has completed (purged errors)
[2025-12-16 11:55:39] 2025-12-16 16:54:38,690 | INFO     | overall cleanup function is called
[2025-12-16 11:55:39] 2025-12-16 16:54:39,696 | INFO     | --- collectZombieJob: --- 10, [14007]
[2025-12-16 11:55:39] 2025-12-16 16:54:39,697 | INFO     | zombie collector waiting for pid 14007
[2025-12-16 11:55:39] 2025-12-16 16:54:39,697 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 11:55:39] 2025-12-16 16:54:39,697 | INFO     | collected zombie processes
[2025-12-16 11:55:39] 2025-12-16 16:54:39,697 | INFO     | will attempt to kill all subprocesses of pid=14007
[2025-12-16 11:55:39] 2025-12-16 16:54:39,791 | INFO     | process IDs to be killed: [14007] (in reverse order)
[2025-12-16 11:55:39] 2025-12-16 16:54:39,841 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 11:55:39] 2025-12-16 16:54:39,842 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 11:55:39] 2025-12-16 16:54:39,846 | INFO     | did not find any defunct processes belonging to 14007
[2025-12-16 11:55:39] 2025-12-16 16:54:39,848 | INFO     | did not find any defunct processes belonging to 14007
[2025-12-16 11:55:39] 2025-12-16 16:54:39,848 | INFO     | ready for new job
[2025-12-16 11:55:39] 2025-12-16 16:54:39,848 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 11:55:39] 2025-12-16 16:54:39,849 | INFO     | ***************************************
[2025-12-16 11:55:39] 2025-12-16 16:54:39,849 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 11:55:39] 2025-12-16 16:54:39,849 | INFO     | ***************************************
[2025-12-16 11:55:39] 2025-12-16 16:54:39,850 | INFO     | 
[2025-12-16 11:55:39] 2025-12-16 16:54:39,850 | INFO     | architecture information:
[2025-12-16 11:55:39] 2025-12-16 16:54:39,851 | INFO     | executing command: cat /etc/os-release
[2025-12-16 11:55:39] 2025-12-16 16:54:39,866 | INFO     | cat /etc/os-release:
[2025-12-16 11:55:39] NAME="CentOS Linux"
[2025-12-16 11:55:39] VERSION="7 (Core)"
[2025-12-16 11:55:39] ID="centos"
[2025-12-16 11:55:39] ID_LIKE="rhel fedora"
[2025-12-16 11:55:39] VERSION_ID="7"
[2025-12-16 11:55:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 11:55:39] ANSI_COLOR="0;31"
[2025-12-16 11:55:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 11:55:39] HOME_URL="https://www.centos.org/"
[2025-12-16 11:55:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 11:55:39] 
[2025-12-16 11:55:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 11:55:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 11:55:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 11:55:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 11:55:39] 
[2025-12-16 11:55:39] 2025-12-16 16:54:39,866 | INFO     | ***************************************
[2025-12-16 11:55:39] 2025-12-16 16:54:40,369 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-16 11:55:39] 2025-12-16 16:54:40,386 | INFO     | sufficient remaining disk space (29454499840 B)
[2025-12-16 11:55:39] 2025-12-16 16:54:40,386 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 11:55:39] 2025-12-16 16:54:40,387 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 11:55:39] 2025-12-16 16:54:40,387 | INFO     | update_server=False
[2025-12-16 11:55:39] 2025-12-16 16:54:40,387 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 11:55:39] 2025-12-16 16:54:40,387 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 11:55:39] 2025-12-16 16:54:40,388 | INFO     | aborting loop
[2025-12-16 11:55:39] 2025-12-16 16:54:40,388 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 11:55:39] 2025-12-16 16:54:40,425 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 11:55:39] 2025-12-16 16:54:41,012 | INFO     | all payload control threads have been joined
[2025-12-16 11:55:39] 2025-12-16 16:54:41,249 | INFO     | all data control threads have been joined
[2025-12-16 11:55:39] 2025-12-16 16:54:41,391 | INFO     | [job] job monitor thread has finished
[2025-12-16 11:55:39] 2025-12-16 16:54:41,393 | INFO     | [job] retrieve thread has finished
[2025-12-16 11:55:39] 2025-12-16 16:54:41,423 | INFO     | all job control threads have been joined
[2025-12-16 11:55:39] 2025-12-16 16:54:41,458 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 11:55:39] 2025-12-16 16:54:41,977 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 11:55:39] 2025-12-16 16:54:42,018 | INFO     | [payload] control thread has finished
[2025-12-16 11:55:39] 2025-12-16 16:54:42,129 | INFO     | [data] copytool_in thread has finished
[2025-12-16 11:55:39] 2025-12-16 16:54:42,254 | INFO     | [data] control thread has finished
[2025-12-16 11:55:39] 2025-12-16 16:54:42,340 | INFO     | [payload] validate_post thread has finished
[2025-12-16 11:55:39] 2025-12-16 16:54:42,428 | INFO     | [job] control thread has finished
[2025-12-16 11:55:39] 2025-12-16 16:54:42,431 | INFO     | [data] copytool_out thread has finished
[2025-12-16 11:55:39] 2025-12-16 16:54:42,694 | INFO     | [payload] failed_post thread has finished
[2025-12-16 11:55:39] 2025-12-16 16:54:42,723 | INFO     | [job] validate thread has finished
[2025-12-16 11:55:39] 2025-12-16 16:54:42,831 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 11:55:39] 2025-12-16 16:54:43,310 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 11:55:39] 2025-12-16 16:54:44,315 | INFO     | [job] queue monitor thread has finished
[2025-12-16 11:55:39] 2025-12-16 16:54:44,394 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 11:55:39] 2025-12-16 16:54:50,619 | INFO     | job.realtimelogging is not enabled
[2025-12-16 11:55:39] 2025-12-16 16:54:51,625 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 11:55:39] 2025-12-16 16:55:10,134 | INFO     | PID=7639 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-16 11:55:39] 2025-12-16 16:55:10,135 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 11:55:39] 2025-12-16 16:55:10,135 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 11:55:39] 2025-12-16 16:55:10,135 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 11:55:39] 2025-12-16 16:55:32,435 | INFO     | [monitor] cgroup control has ended
[2025-12-16 11:55:39] 2025-12-16 16:55:34,422 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140342930958144)>', '<ExcThread(monitor, started 140342259074816)>']
[2025-12-16 11:55:39] 2025-12-16 16:55:35,262 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 11:55:39] 2025-12-16 16:55:35,263 | INFO     | [monitor] control thread has ended
[2025-12-16 11:55:39] 2025-12-16 16:55:39,448 | INFO     | all workflow threads have been joined
[2025-12-16 11:55:39] 2025-12-16 16:55:39,448 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 11:55:39] 2025-12-16 16:55:39,448 | INFO     | traces error code: 0
[2025-12-16 11:55:39] 2025-12-16 16:55:39,448 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 11:55:39] 2025-12-16 16:55:39,541 [wrapper] ==== pilot stdout END ====
[2025-12-16 11:55:39] 2025-12-16 16:55:39,545 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 11:55:39] 2025-12-16 16:55:39,549 [wrapper] pilotpid: 7639
[2025-12-16 11:55:39] 2025-12-16 16:55:39,552 [wrapper] Pilot exit status: 0
[2025-12-16 11:55:39] 2025-12-16 16:55:39,568 [wrapper] pandaids: 6931013665
[2025-12-16 11:55:39] 2025-12-16 16:55:39,614 [wrapper] cleanup supervisor_pilot 11237 7640
[2025-12-16 11:55:39] 2025-12-16 16:55:39,618 [wrapper] Test setup, not cleaning
[2025-12-16 11:55:39] 2025-12-16 16:55:39,622 [wrapper] apfmon messages muted
[2025-12-16 11:55:39] 2025-12-16 16:55:39,626 [wrapper] ==== wrapper stdout END ====
[2025-12-16 11:55:39] 2025-12-16 16:55:39,630 [wrapper] ==== wrapper stderr END ====
[2025-12-16 11:55:39]  *** Error codes and diagnostics ***
[2025-12-16 11:55:39]     "exeErrorCode": 0,
[2025-12-16 11:55:39]     "exeErrorDiag": "",
[2025-12-16 11:55:39]     "pilotErrorCode": 0,
[2025-12-16 11:55:39]     "pilotErrorDiag": "",
[2025-12-16 11:55:39]  *** Listing of results directory ***
[2025-12-16 11:55:39] total 337504
[2025-12-16 11:55:39] -rw-r--r-- 1 boincer umatlas    579449 Dec 16 04:01 pilot3.tar.gz
[2025-12-16 11:55:39] -rwx------ 1 boincer umatlas     36322 Dec 16 04:04 runpilot2-wrapper.sh
[2025-12-16 11:55:39] -rw-r--r-- 1 boincer umatlas      5112 Dec 16 04:06 queuedata.json
[2025-12-16 11:55:39] -rw-r--r-- 1 boincer umatlas       100 Dec 16 10:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 11:55:39] -rwxr-xr-x 1 boincer umatlas      7986 Dec 16 10:36 run_atlas
[2025-12-16 11:55:39] -rw-r--r-- 1 boincer umatlas       105 Dec 16 10:36 job.xml
[2025-12-16 11:55:39] -rw-r--r-- 2 boincer umatlas 192355990 Dec 16 10:36 EVNT.47886929._000268.pool.root.1
[2025-12-16 11:55:39] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 10:36 start_atlas.sh
[2025-12-16 11:55:39] drwxrwx--x 2 boincer umatlas      4096 Dec 16 10:36 shared
[2025-12-16 11:55:39] -rw-r--r-- 2 boincer umatlas    592398 Dec 16 10:36 input.tar.gz
[2025-12-16 11:55:39] -rw-r--r-- 1 boincer umatlas         0 Dec 16 10:36 boinc_lockfile
[2025-12-16 11:55:39] -rw-r--r-- 1 boincer umatlas      2513 Dec 16 10:36 pandaJob.out
[2025-12-16 11:55:39] -rw------- 1 boincer umatlas        57 Dec 16 10:36 setup.sh.local
[2025-12-16 11:55:39] -rw------- 1 boincer umatlas    987386 Dec 16 10:36 agis_schedconf.cvmfs.json
[2025-12-16 11:55:39] -rw------- 1 boincer umatlas   1516240 Dec 16 10:36 agis_ddmendpoints.agis.ALL.json
[2025-12-16 11:55:39] drwx------ 5 boincer umatlas      4096 Dec 16 10:36 pilot3
[2025-12-16 11:55:39] -rw-r--r-- 1 boincer umatlas      5953 Dec 16 11:45 init_data.xml
[2025-12-16 11:55:39] -rw------- 1 boincer umatlas 147207269 Dec 16 11:54 HITS.47886933._006909.pool.root.1
[2025-12-16 11:55:39] -rw-r--r-- 1 boincer umatlas       530 Dec 16 11:54 boinc_task_state.xml
[2025-12-16 11:55:39] -rw------- 1 boincer umatlas      1046 Dec 16 11:54 memory_monitor_summary.json
[2025-12-16 11:55:39] -rw------- 1 boincer umatlas        95 Dec 16 11:54 pilot_heartbeat.json
[2025-12-16 11:55:39] -rw------- 1 boincer umatlas    381549 Dec 16 11:54 log.47886933._006909.job.log.tgz.1
[2025-12-16 11:55:39] -rw------- 1 boincer umatlas      7853 Dec 16 11:54 heartbeat.json
[2025-12-16 11:55:39] -rw-r--r-- 1 boincer umatlas        27 Dec 16 11:55 wrapper_checkpoint.txt
[2025-12-16 11:55:39] -rw-r--r-- 1 boincer umatlas      8192 Dec 16 11:55 boinc_mmap_file
[2025-12-16 11:55:39] -rw------- 1 boincer umatlas      4817 Dec 16 11:55 pilotlog.txt
[2025-12-16 11:55:39] -rw------- 1 boincer umatlas    680133 Dec 16 11:55 log.47886933._006909.job.log.1
[2025-12-16 11:55:39] -rw------- 1 boincer umatlas       357 Dec 16 11:55 output.list
[2025-12-16 11:55:39] -rw-r--r-- 1 boincer umatlas       620 Dec 16 11:55 runtime_log
[2025-12-16 11:55:39] -rw------- 1 boincer umatlas   1085440 Dec 16 11:55 result.tar.gz
[2025-12-16 11:55:39] -rw-r--r-- 1 boincer umatlas      9344 Dec 16 11:55 runtime_log.err
[2025-12-16 11:55:39] -rw------- 1 boincer umatlas       659 Dec 16 11:55 iCRKDmAAgp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmXTVKDmKrV3tn.diag
[2025-12-16 11:55:39] -rw-r--r-- 1 boincer umatlas     21809 Dec 16 11:55 stderr.txt
[2025-12-16 11:55:39] HITS file was successfully produced:
[2025-12-16 11:55:39] -rw------- 1 boincer umatlas 147207269 Dec 16 11:54 shared/HITS.pool.root.1
[2025-12-16 11:55:39]  *** Contents of shared directory: ***
[2025-12-16 11:55:39] total 333264
[2025-12-16 11:55:39] -rw-r--r-- 2 boincer umatlas 192355990 Dec 16 10:36 ATLAS.root_0
[2025-12-16 11:55:39] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 10:36 start_atlas.sh
[2025-12-16 11:55:39] -rw-r--r-- 2 boincer umatlas    592398 Dec 16 10:36 input.tar.gz
[2025-12-16 11:55:39] -rw------- 1 boincer umatlas 147207269 Dec 16 11:54 HITS.pool.root.1
[2025-12-16 11:55:39] -rw------- 1 boincer umatlas   1085440 Dec 16 11:55 result.tar.gz
11:55:41 (3936): run_atlas exited; CPU time 50615.421226
11:55:41 (3936): called boinc_finish(0)

</stderr_txt>
]]>

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