Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:20:34 (29665): wrapper (7.7.26015): starting
10:20:34 (29665): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 10:20:34] Arguments: --nthreads 8
[2025-12-16 10:20:34] Threads: 8
[2025-12-16 10:20:34] Checking for CVMFS
[2025-12-16 10:20:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 10:20:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 10:20:35] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 10:20:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 10:20:35] 2.11.2.0 6509 146616 88332 154075 0 56 13777733 20275201 1 130560 0 46394246 99.894 7945741 29040 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-16 10:20:35] CVMFS is ok
[2025-12-16 10:20:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 10:20:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 10:20:35] Further information can be found at the LHC@home message board.
[2025-12-16 10:20:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 10:20:35] Checking for apptainer binary...
[2025-12-16 10:20:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 10:20:35] Running /usr/bin/apptainer --version
[2025-12-16 10:20:35] apptainer version 1.3.2-1.el7
[2025-12-16 10:20:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 10:20:37] c-204-16.aglt2.org
[2025-12-16 10:20:37] apptainer works
[2025-12-16 10:20:37] Set ATHENA_PROC_NUMBER=8
[2025-12-16 10:20:37] Set ATHENA_CORE_NUMBER=8
[2025-12-16 10:20:37] Starting ATLAS job with PandaID=6931012393
[2025-12-16 10:20:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 12:35:14]  *** The last 200 lines of the pilot log: ***
[2025-12-16 12:35:14] 2025-12-16 17:34:12,880 | INFO     | monitor loop #588: job 0:6931012393 is in state 'finished'
[2025-12-16 12:35:14] 2025-12-16 17:34:12,880 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 12:35:14] 2025-12-16 17:34:14,840 | INFO     | time since job start (7999s) is within the limit (174528.0s)
[2025-12-16 12:35:14] 2025-12-16 17:34:15,383 | INFO     | monitor loop #589: job 0:6931012393 is in state 'finished'
[2025-12-16 12:35:14] 2025-12-16 17:34:15,383 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 12:35:14] 2025-12-16 17:34:16,846 | INFO     | time since job start (8001s) is within the limit (174528.0s)
[2025-12-16 12:35:14] 2025-12-16 17:34:17,886 | INFO     | monitor loop #590: job 0:6931012393 is in state 'finished'
[2025-12-16 12:35:14] 2025-12-16 17:34:17,886 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 12:35:14] 2025-12-16 17:34:18,851 | INFO     | time since job start (8003s) is within the limit (174528.0s)
[2025-12-16 12:35:14] 2025-12-16 17:34:20,046 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-16 12:35:14] 2025-12-16 17:34:20,050 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1712.5
[2025-12-16 12:35:14] 2025-12-16 17:34:20,052 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6931012393/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 12:35:14] 2025-12-16 17:34:20,054 | INFO     | extracted standard info from prmon json
[2025-12-16 12:35:14] 2025-12-16 17:34:20,054 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 12:35:14] 2025-12-16 17:34:20,054 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 12:35:14] 2025-12-16 17:34:20,054 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 12:35:14] 2025-12-16 17:34:20,055 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 12:35:14] 2025-12-16 17:34:20,058 | INFO     | fitting pss+swap vs Time
[2025-12-16 12:35:14] 2025-12-16 17:34:20,058 | INFO     | sum of square deviations: 697054930.0
[2025-12-16 12:35:14] 2025-12-16 17:34:20,059 | INFO     | sum of deviations: -4527422013.000001
[2025-12-16 12:35:14] 2025-12-16 17:34:20,059 | INFO     | mean x: 1765902452.0
[2025-12-16 12:35:14] 2025-12-16 17:34:20,060 | INFO     | mean y: 2529904.3740458013
[2025-12-16 12:35:14] 2025-12-16 17:34:20,060 | INFO     | intersect: 11472193613.653713
[2025-12-16 12:35:14] 2025-12-16 17:34:20,060 | INFO     | chi2: 1.6027545756367727
[2025-12-16 12:35:14] 2025-12-16 17:34:20,061 | INFO     | sum of square deviations: 620244187.5
[2025-12-16 12:35:14] 2025-12-16 17:34:20,061 | INFO     | sum of deviations: -3765094490.499997
[2025-12-16 12:35:14] 2025-12-16 17:34:20,061 | INFO     | mean x: 1765902299.5
[2025-12-16 12:35:14] 2025-12-16 17:34:20,062 | INFO     | mean y: 2531418.261904762
[2025-12-16 12:35:14] 2025-12-16 17:34:20,062 | INFO     | intersect: 10722162738.642035
[2025-12-16 12:35:14] 2025-12-16 17:34:20,062 | INFO     | chi2: 1.603812494523844
[2025-12-16 12:35:14] 2025-12-16 17:34:20,062 | INFO     | current chi2=1.603812494523844 (change=-0.0660062933622183 %)
[2025-12-16 12:35:14] 2025-12-16 17:34:20,063 | INFO     | right removable region: 125
[2025-12-16 12:35:14] 2025-12-16 17:34:20,063 | INFO     | sum of square deviations: 620244187.5
[2025-12-16 12:35:14] 2025-12-16 17:34:20,064 | INFO     | sum of deviations: -23726371143.999992
[2025-12-16 12:35:14] 2025-12-16 17:34:20,064 | INFO     | mean x: 1765902604.5
[2025-12-16 12:35:14] 2025-12-16 17:34:20,064 | INFO     | mean y: 2567342.793650794
[2025-12-16 12:35:14] 2025-12-16 17:34:20,064 | INFO     | intersect: 67554124363.26671
[2025-12-16 12:35:14] 2025-12-16 17:34:20,064 | INFO     | chi2: 0.15608707194386462
[2025-12-16 12:35:14] 2025-12-16 17:34:20,065 | INFO     | current chi2=0.15608707194386462 (change=90.26132420293659 %)
[2025-12-16 12:35:14] 2025-12-16 17:34:20,065 | INFO     | sum of square deviations: 549294020.0
[2025-12-16 12:35:14] 2025-12-16 17:34:20,065 | INFO     | sum of deviations: -24464851295.999996
[2025-12-16 12:35:14] 2025-12-16 17:34:20,066 | INFO     | mean x: 1765902757.0
[2025-12-16 12:35:14] 2025-12-16 17:34:20,066 | INFO     | mean y: 2568821.256198347
[2025-12-16 12:35:14] 2025-12-16 17:34:20,066 | INFO     | intersect: 78653613216.75392
[2025-12-16 12:35:14] 2025-12-16 17:34:20,066 | INFO     | chi2: 0.11820619175632525
[2025-12-16 12:35:14] 2025-12-16 17:34:20,066 | INFO     | current chi2=0.11820619175632525 (change=24.269069639004375 %)
[2025-12-16 12:35:14] 2025-12-16 17:34:20,066 | INFO     | left removable region: 20
[2025-12-16 12:35:14] 2025-12-16 17:34:20,067 | INFO     | sum of square deviations: 358927660.0
[2025-12-16 12:35:14] 2025-12-16 17:34:20,067 | INFO     | sum of deviations: -16550545132.0
[2025-12-16 12:35:14] 2025-12-16 17:34:20,067 | INFO     | mean x: 1765902879.0
[2025-12-16 12:35:14] 2025-12-16 17:34:20,067 | INFO     | mean y: 2555901.066666667
[2025-12-16 12:35:14] 2025-12-16 17:34:20,067 | INFO     | intersect: 81430260017.31738
[2025-12-16 12:35:14] 2025-12-16 17:34:20,068 | INFO     | chi2: 0.10957445511532918
[2025-12-16 12:35:14] 2025-12-16 17:34:20,068 | INFO     | current memory leak: -46.11 B/s (using 105 data points, chi2=0.11)
[2025-12-16 12:35:14] 2025-12-16 17:34:20,068 | INFO     | could have reported an average CPU frequency of 2005 MHz (8 samples)
[2025-12-16 12:35:14] 2025-12-16 17:34:20,068 | INFO     | ..............................
[2025-12-16 12:35:14] 2025-12-16 17:34:20,069 | INFO     | . Timing measurements:
[2025-12-16 12:35:14] 2025-12-16 17:34:20,069 | INFO     | . get job = 0 s
[2025-12-16 12:35:14] 2025-12-16 17:34:20,069 | INFO     | . initial setup = 2 s
[2025-12-16 12:35:14] 2025-12-16 17:34:20,069 | INFO     | . payload setup = 8 s
[2025-12-16 12:35:14] 2025-12-16 17:34:20,069 | INFO     | . stage-in = 0 s
[2025-12-16 12:35:14] 2025-12-16 17:34:20,069 | INFO     | . payload execution = 7964 s
[2025-12-16 12:35:14] 2025-12-16 17:34:20,069 | INFO     | . stage-out = 0 s
[2025-12-16 12:35:14] 2025-12-16 17:34:20,069 | INFO     | . log creation = 0 s
[2025-12-16 12:35:14] 2025-12-16 17:34:20,069 | INFO     | ..............................
[2025-12-16 12:35:14] 2025-12-16 17:34:20,168 | INFO     | 
[2025-12-16 12:35:14] 2025-12-16 17:34:20,169 | INFO     | job summary report
[2025-12-16 12:35:14] 2025-12-16 17:34:20,169 | INFO     | --------------------------------------------------
[2025-12-16 12:35:14] 2025-12-16 17:34:20,169 | INFO     | PanDA job id: 6931012393
[2025-12-16 12:35:14] 2025-12-16 17:34:20,169 | INFO     | task id: 47886933
[2025-12-16 12:35:14] 2025-12-16 17:34:20,169 | INFO     | errors: (none)
[2025-12-16 12:35:14] 2025-12-16 17:34:20,169 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 12:35:14] 2025-12-16 17:34:20,170 | INFO     | pilot state: finished 
[2025-12-16 12:35:14] 2025-12-16 17:34:20,170 | INFO     | transexitcode: 0
[2025-12-16 12:35:14] 2025-12-16 17:34:20,170 | INFO     | exeerrorcode: 0
[2025-12-16 12:35:14] 2025-12-16 17:34:20,170 | INFO     | exeerrordiag: 
[2025-12-16 12:35:14] 2025-12-16 17:34:20,170 | INFO     | exitcode: 0
[2025-12-16 12:35:14] 2025-12-16 17:34:20,171 | INFO     | exitmsg: OK
[2025-12-16 12:35:14] 2025-12-16 17:34:20,171 | INFO     | cpuconsumptiontime: 59361 s
[2025-12-16 12:35:14] 2025-12-16 17:34:20,171 | INFO     | nevents: 400
[2025-12-16 12:35:14] 2025-12-16 17:34:20,171 | INFO     | neventsw: 0
[2025-12-16 12:35:14] 2025-12-16 17:34:20,171 | INFO     | pid: 8447
[2025-12-16 12:35:14] 2025-12-16 17:34:20,171 | INFO     | pgrp: 8447
[2025-12-16 12:35:14] 2025-12-16 17:34:20,172 | INFO     | corecount: 8
[2025-12-16 12:35:14] 2025-12-16 17:34:20,172 | INFO     | event service: False
[2025-12-16 12:35:14] 2025-12-16 17:34:20,172 | INFO     | sizes: {0: 2283966, 6: 2284228, 11: 2284256, 7976: 2311931, 7977: 2320985, 7987: 2321123}
[2025-12-16 12:35:14] 2025-12-16 17:34:20,172 | INFO     | --------------------------------------------------
[2025-12-16 12:35:14] 2025-12-16 17:34:20,172 | INFO     | 
[2025-12-16 12:35:14] 2025-12-16 17:34:20,172 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-16 12:35:14] 2025-12-16 17:34:20,202 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 12:35:14] 2025-12-16 17:34:20,202 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 12:35:14] 2025-12-16 17:34:20,203 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 12:35:14] 2025-12-16 17:34:20,203 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 12:35:14] 2025-12-16 17:34:20,203 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 12:35:14] 2025-12-16 17:34:20,203 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 12:35:14] 2025-12-16 17:34:20,203 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 12:35:14] 2025-12-16 17:34:20,204 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 12:35:14] 2025-12-16 17:34:20,204 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 12:35:14] 2025-12-16 17:34:20,204 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 12:35:14] 2025-12-16 17:34:20,204 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 12:35:14] 2025-12-16 17:34:20,204 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 12:35:14] 2025-12-16 17:34:20,204 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 12:35:14] 2025-12-16 17:34:20,205 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 12:35:14] 2025-12-16 17:34:20,205 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 12:35:14] 2025-12-16 17:34:20,205 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 12:35:14] 2025-12-16 17:34:20,205 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 12:35:14] 2025-12-16 17:34:20,205 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 12:35:14] 2025-12-16 17:34:20,205 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 12:35:14] 2025-12-16 17:34:20,206 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 12:35:14] 2025-12-16 17:34:20,206 | INFO     | job 6931012393 has completed (purged errors)
[2025-12-16 12:35:14] 2025-12-16 17:34:20,206 | INFO     | overall cleanup function is called
[2025-12-16 12:35:14] 2025-12-16 17:34:21,215 | INFO     | --- collectZombieJob: --- 10, [8447]
[2025-12-16 12:35:14] 2025-12-16 17:34:21,215 | INFO     | zombie collector waiting for pid 8447
[2025-12-16 12:35:14] 2025-12-16 17:34:21,215 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 12:35:14] 2025-12-16 17:34:21,215 | INFO     | collected zombie processes
[2025-12-16 12:35:14] 2025-12-16 17:34:21,216 | INFO     | will attempt to kill all subprocesses of pid=8447
[2025-12-16 12:35:14] 2025-12-16 17:34:21,306 | INFO     | process IDs to be killed: [8447] (in reverse order)
[2025-12-16 12:35:14] 2025-12-16 17:34:21,359 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 12:35:14] 2025-12-16 17:34:21,360 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 12:35:14] 2025-12-16 17:34:21,364 | INFO     | did not find any defunct processes belonging to 8447
[2025-12-16 12:35:14] 2025-12-16 17:34:21,367 | INFO     | did not find any defunct processes belonging to 8447
[2025-12-16 12:35:14] 2025-12-16 17:34:21,367 | INFO     | ready for new job
[2025-12-16 12:35:14] 2025-12-16 17:34:21,367 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 12:35:14] 2025-12-16 17:34:21,369 | INFO     | ***************************************
[2025-12-16 12:35:14] 2025-12-16 17:34:21,369 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 12:35:14] 2025-12-16 17:34:21,369 | INFO     | ***************************************
[2025-12-16 12:35:14] 2025-12-16 17:34:21,369 | INFO     | 
[2025-12-16 12:35:14] 2025-12-16 17:34:21,370 | INFO     | architecture information:
[2025-12-16 12:35:14] 2025-12-16 17:34:21,370 | INFO     | executing command: cat /etc/os-release
[2025-12-16 12:35:14] 2025-12-16 17:34:21,389 | INFO     | cat /etc/os-release:
[2025-12-16 12:35:14] NAME="CentOS Linux"
[2025-12-16 12:35:14] VERSION="7 (Core)"
[2025-12-16 12:35:14] ID="centos"
[2025-12-16 12:35:14] ID_LIKE="rhel fedora"
[2025-12-16 12:35:14] VERSION_ID="7"
[2025-12-16 12:35:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 12:35:14] ANSI_COLOR="0;31"
[2025-12-16 12:35:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 12:35:14] HOME_URL="https://www.centos.org/"
[2025-12-16 12:35:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 12:35:14] 
[2025-12-16 12:35:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 12:35:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 12:35:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 12:35:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 12:35:14] 
[2025-12-16 12:35:14] 2025-12-16 17:34:21,389 | INFO     | ***************************************
[2025-12-16 12:35:14] 2025-12-16 17:34:21,892 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-16 12:35:14] 2025-12-16 17:34:21,911 | INFO     | sufficient remaining disk space (18797821952 B)
[2025-12-16 12:35:14] 2025-12-16 17:34:21,911 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 12:35:14] 2025-12-16 17:34:21,912 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 12:35:14] 2025-12-16 17:34:21,912 | INFO     | update_server=False
[2025-12-16 12:35:14] 2025-12-16 17:34:21,912 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 12:35:14] 2025-12-16 17:34:21,912 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 12:35:14] 2025-12-16 17:34:21,913 | INFO     | aborting loop
[2025-12-16 12:35:14] 2025-12-16 17:34:21,913 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 12:35:14] 2025-12-16 17:34:22,120 | INFO     | all data control threads have been joined
[2025-12-16 12:35:14] 2025-12-16 17:34:22,915 | INFO     | [job] queue monitor thread has finished
[2025-12-16 12:35:14] 2025-12-16 17:34:22,918 | INFO     | [job] retrieve thread has finished
[2025-12-16 12:35:14] 2025-12-16 17:34:22,918 | INFO     | [job] job monitor thread has finished
[2025-12-16 12:35:14] 2025-12-16 17:34:22,918 | INFO     | all payload control threads have been joined
[2025-12-16 12:35:14] 2025-12-16 17:34:23,126 | INFO     | [data] control thread has finished
[2025-12-16 12:35:14] 2025-12-16 17:34:23,146 | INFO     | [payload] validate_post thread has finished
[2025-12-16 12:35:14] 2025-12-16 17:34:23,219 | INFO     | all job control threads have been joined
[2025-12-16 12:35:14] 2025-12-16 17:34:23,292 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 12:35:14] 2025-12-16 17:34:23,516 | INFO     | [job] validate thread has finished
[2025-12-16 12:35:14] 2025-12-16 17:34:23,767 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 12:35:14] 2025-12-16 17:34:23,889 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 12:35:14] 2025-12-16 17:34:23,928 | INFO     | [payload] control thread has finished
[2025-12-16 12:35:14] 2025-12-16 17:34:24,056 | INFO     | [data] copytool_in thread has finished
[2025-12-16 12:35:14] 2025-12-16 17:34:24,059 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 12:35:14] 2025-12-16 17:34:24,224 | INFO     | [job] control thread has finished
[2025-12-16 12:35:14] 2025-12-16 17:34:24,494 | INFO     | [payload] failed_post thread has finished
[2025-12-16 12:35:14] 2025-12-16 17:34:25,293 | INFO     | [data] copytool_out thread has finished
[2025-12-16 12:35:14] 2025-12-16 17:34:25,376 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 12:35:14] 2025-12-16 17:34:29,382 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 12:35:14] 2025-12-16 17:34:32,336 | INFO     | job.realtimelogging is not enabled
[2025-12-16 12:35:14] 2025-12-16 17:34:33,341 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 12:35:14] 2025-12-16 17:34:51,976 | INFO     | PID=896 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-12-16 12:35:14] 2025-12-16 17:34:51,977 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 12:35:14] 2025-12-16 17:34:51,977 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 12:35:14] 2025-12-16 17:34:51,977 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 12:35:14] 2025-12-16 17:35:07,793 | INFO     | [monitor] cgroup control has ended
[2025-12-16 12:35:14] 2025-12-16 17:35:09,505 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140378335369024)>', '<ExcThread(monitor, started 140377759663872)>']
[2025-12-16 12:35:14] 2025-12-16 17:35:10,066 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 12:35:14] 2025-12-16 17:35:10,067 | INFO     | [monitor] control thread has ended
[2025-12-16 12:35:14] 2025-12-16 17:35:14,531 | INFO     | all workflow threads have been joined
[2025-12-16 12:35:14] 2025-12-16 17:35:14,531 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 12:35:14] 2025-12-16 17:35:14,532 | INFO     | traces error code: 0
[2025-12-16 12:35:14] 2025-12-16 17:35:14,532 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 12:35:14] 2025-12-16 17:35:14,658 [wrapper] ==== pilot stdout END ====
[2025-12-16 12:35:14] 2025-12-16 17:35:14,662 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 12:35:14] 2025-12-16 17:35:14,667 [wrapper] pilotpid: 896
[2025-12-16 12:35:14] 2025-12-16 17:35:14,671 [wrapper] Pilot exit status: 0
[2025-12-16 12:35:14] 2025-12-16 17:35:14,688 [wrapper] pandaids: 6931012393
[2025-12-16 12:35:14] 2025-12-16 17:35:14,740 [wrapper] cleanup supervisor_pilot  2599 897
[2025-12-16 12:35:14] 2025-12-16 17:35:14,745 [wrapper] Test setup, not cleaning
[2025-12-16 12:35:14] 2025-12-16 17:35:14,749 [wrapper] apfmon messages muted
[2025-12-16 12:35:14] 2025-12-16 17:35:14,753 [wrapper] ==== wrapper stdout END ====
[2025-12-16 12:35:14] 2025-12-16 17:35:14,758 [wrapper] ==== wrapper stderr END ====
[2025-12-16 12:35:14]  *** Error codes and diagnostics ***
[2025-12-16 12:35:14]     "exeErrorCode": 0,
[2025-12-16 12:35:14]     "exeErrorDiag": "",
[2025-12-16 12:35:14]     "pilotErrorCode": 0,
[2025-12-16 12:35:14]     "pilotErrorDiag": "",
[2025-12-16 12:35:14]  *** Listing of results directory ***
[2025-12-16 12:35:14] total 340884
[2025-12-16 12:35:14] -rw-r--r-- 1 boincer umatlas    579449 Dec 16 04:01 pilot3.tar.gz
[2025-12-16 12:35:14] -rwx------ 1 boincer umatlas     36322 Dec 16 04:04 runpilot2-wrapper.sh
[2025-12-16 12:35:14] -rw-r--r-- 1 boincer umatlas      5112 Dec 16 04:06 queuedata.json
[2025-12-16 12:35:14] -rw-r--r-- 1 boincer umatlas       100 Dec 16 10:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 12:35:14] -rwxr-xr-x 1 boincer umatlas      7986 Dec 16 10:20 run_atlas
[2025-12-16 12:35:14] -rw-r--r-- 1 boincer umatlas       105 Dec 16 10:20 job.xml
[2025-12-16 12:35:14] -rw-r--r-- 2 boincer umatlas 192666776 Dec 16 10:20 EVNT.47886929._000252.pool.root.1
[2025-12-16 12:35:14] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 10:20 start_atlas.sh
[2025-12-16 12:35:14] drwxrwx--x 2 boincer umatlas      4096 Dec 16 10:20 shared
[2025-12-16 12:35:14] -rw-r--r-- 2 boincer umatlas    592400 Dec 16 10:20 input.tar.gz
[2025-12-16 12:35:14] -rw-r--r-- 1 boincer umatlas         0 Dec 16 10:20 boinc_lockfile
[2025-12-16 12:35:14] -rw-r--r-- 1 boincer umatlas      2514 Dec 16 10:20 pandaJob.out
[2025-12-16 12:35:14] -rw------- 1 boincer umatlas        57 Dec 16 10:20 setup.sh.local
[2025-12-16 12:35:14] -rw------- 1 boincer umatlas    987386 Dec 16 10:20 agis_schedconf.cvmfs.json
[2025-12-16 12:35:14] -rw------- 1 boincer umatlas   1516240 Dec 16 10:20 agis_ddmendpoints.agis.ALL.json
[2025-12-16 12:35:14] drwx------ 5 boincer umatlas      4096 Dec 16 10:20 pilot3
[2025-12-16 12:35:14] -rw-r--r-- 1 boincer umatlas      5910 Dec 16 12:28 init_data.xml
[2025-12-16 12:35:14] -rw-r--r-- 1 boincer umatlas       529 Dec 16 12:33 boinc_task_state.xml
[2025-12-16 12:35:14] -rw------- 1 boincer umatlas 149488483 Dec 16 12:33 HITS.47886933._006517.pool.root.1
[2025-12-16 12:35:14] -rw------- 1 boincer umatlas      1048 Dec 16 12:34 memory_monitor_summary.json
[2025-12-16 12:35:14] -rw------- 1 boincer umatlas    377751 Dec 16 12:34 log.47886933._006517.job.log.tgz.1
[2025-12-16 12:35:14] -rw------- 1 boincer umatlas      7847 Dec 16 12:34 heartbeat.json
[2025-12-16 12:35:14] -rw------- 1 boincer umatlas        95 Dec 16 12:34 pilot_heartbeat.json
[2025-12-16 12:35:14] -rw-r--r-- 1 boincer umatlas        27 Dec 16 12:34 wrapper_checkpoint.txt
[2025-12-16 12:35:14] -rw-r--r-- 1 boincer umatlas      8192 Dec 16 12:34 boinc_mmap_file
[2025-12-16 12:35:14] -rw------- 1 boincer umatlas      4816 Dec 16 12:35 pilotlog.txt
[2025-12-16 12:35:14] -rw------- 1 boincer umatlas   1119703 Dec 16 12:35 log.47886933._006517.job.log.1
[2025-12-16 12:35:14] -rw------- 1 boincer umatlas       357 Dec 16 12:35 output.list
[2025-12-16 12:35:14] -rw-r--r-- 1 boincer umatlas       620 Dec 16 12:35 runtime_log
[2025-12-16 12:35:14] -rw------- 1 boincer umatlas   1515520 Dec 16 12:35 result.tar.gz
[2025-12-16 12:35:14] -rw-r--r-- 1 boincer umatlas      9342 Dec 16 12:35 runtime_log.err
[2025-12-16 12:35:14] -rw------- 1 boincer umatlas       660 Dec 16 12:35 10VMDmz9fp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmqRVKDmLp6hGo.diag
[2025-12-16 12:35:14] -rw-r--r-- 1 boincer umatlas     21250 Dec 16 12:35 stderr.txt
[2025-12-16 12:35:14] HITS file was successfully produced:
[2025-12-16 12:35:14] -rw------- 1 boincer umatlas 149488483 Dec 16 12:33 shared/HITS.pool.root.1
[2025-12-16 12:35:14]  *** Contents of shared directory: ***
[2025-12-16 12:35:14] total 336220
[2025-12-16 12:35:14] -rw-r--r-- 2 boincer umatlas 192666776 Dec 16 10:20 ATLAS.root_0
[2025-12-16 12:35:14] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 10:20 start_atlas.sh
[2025-12-16 12:35:14] -rw-r--r-- 2 boincer umatlas    592400 Dec 16 10:20 input.tar.gz
[2025-12-16 12:35:14] -rw------- 1 boincer umatlas 149488483 Dec 16 12:33 HITS.pool.root.1
[2025-12-16 12:35:14] -rw------- 1 boincer umatlas   1515520 Dec 16 12:35 result.tar.gz
12:35:16 (29665): run_atlas exited; CPU time 59329.724961
12:35:16 (29665): called boinc_finish(0)

</stderr_txt>
]]>

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