Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:24:43 (3098481): wrapper (7.7.26015): starting
16:24:43 (3098481): wrapper: running run_atlas (--nthreads 3)
[2025-12-16 16:24:43] Arguments: --nthreads 3
[2025-12-16 16:24:43] Threads: 3
[2025-12-16 16:24:43] Checking for CVMFS
[2025-12-16 16:24:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 16:24:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 16:24:43] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 16:24:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 16:24:43] 2.9.2.0 2672154 1675 64892 154075 0 57 18625069 36864000 0 130560 0 1099313 99.989 63049 17325 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-16 16:24:43] CVMFS is ok
[2025-12-16 16:24:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 16:24:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 16:24:43] Further information can be found at the LHC@home message board.
[2025-12-16 16:24:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 16:24:43] Checking for apptainer binary...
[2025-12-16 16:24:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 16:24:43] Running /usr/bin/apptainer --version
[2025-12-16 16:24:43] apptainer version 1.4.1-1.1
[2025-12-16 16:24:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 16:24:43] atlasA219a
[2025-12-16 16:24:43] apptainer works
[2025-12-16 16:24:43] Set ATHENA_PROC_NUMBER=3
[2025-12-16 16:24:43] Set ATHENA_CORE_NUMBER=3
[2025-12-16 16:24:43] Starting ATLAS job with PandaID=6930761791
[2025-12-16 16:24:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 18:05:05]  *** The last 200 lines of the pilot log: ***
[2025-12-16 18:05:05]  filesize=258560
[2025-12-16 18:05:05]  filetype=log
[2025-12-16 18:05:05]  guid=c710d89f-01be-4596-9ce7-92095f8be977
[2025-12-16 18:05:05]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-12-16 18:05:05]  is_altstaged=None
[2025-12-16 18:05:05]  is_tar=False
[2025-12-16 18:05:05]  lfn=log.47886831._012798.job.log.tgz.1
[2025-12-16 18:05:05]  mtime=0
[2025-12-16 18:05:05]  protocol_id=None
[2025-12-16 18:05:05]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-16 18:05:05]  replicas=None
[2025-12-16 18:05:05]  scope=mc23_13p6TeV
[2025-12-16 18:05:05]  status=None
[2025-12-16 18:05:05]  status_code=0
[2025-12-16 18:05:05]  storage_token=
[2025-12-16 18:05:05]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6930761791/log.47886831._012798.job.log.tgz.1
[2025-12-16 18:05:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c8/9f/log.47886831._012798.job.log.tgz.1
[2025-12-16 18:05:05]  workdir=None
[2025-12-16 18:05:05] ]
[2025-12-16 18:05:05] 2025-12-16 17:04:31,287 | INFO     | transferring file log.47886831._012798.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6930761791/log.47886831._012798.job.log.tgz.1 to /local/data/boinc/
[2025-12-16 18:05:05] 2025-12-16 17:04:31,287 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6930761791/log.47886831._012798.job.log.tgz.1 /local/data/boinc/slots/0/log.47886831._0127
[2025-12-16 18:05:05] 2025-12-16 17:04:31,299 | INFO     | adding to output.list: log.47886831._012798.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c8/9f/log.47886831._012798.job.log.tg
[2025-12-16 18:05:05] 2025-12-16 17:04:31,300 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-16 18:05:05] 2025-12-16 17:04:31,300 | INFO     | summary of transferred files:
[2025-12-16 18:05:05] 2025-12-16 17:04:31,300 | INFO     |  -- lfn=log.47886831._012798.job.log.tgz.1, status_code=0, status=transferred
[2025-12-16 18:05:05] 2025-12-16 17:04:31,300 | INFO     | stage-out finished correctly
[2025-12-16 18:05:05] 2025-12-16 17:04:31,332 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-16 18:05:05] 2025-12-16 17:04:31,360 | INFO     | job 6930761791 has state=finished
[2025-12-16 18:05:05] 2025-12-16 17:04:31,360 | INFO     | preparing for final server update for job 6930761791 in state='finished'
[2025-12-16 18:05:05] 2025-12-16 17:04:31,360 | INFO     | this job has now completed (state=finished)
[2025-12-16 18:05:05] 2025-12-16 17:04:31,360 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-16 18:05:05] 2025-12-16 17:04:31,360 | INFO     | log transfer has been attempted: DONE
[2025-12-16 18:05:05] 2025-12-16 17:04:31,360 | INFO     | job 6930761791 has finished - writing final server update
[2025-12-16 18:05:05] 2025-12-16 17:04:31,361 | INFO     | total number of processed events: 400 (read)
[2025-12-16 18:05:05] 2025-12-16 17:04:31,361 | INFO     | executing command: lscpu
[2025-12-16 18:05:05] 2025-12-16 17:04:31,373 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-16 18:05:05] 2025-12-16 17:04:31,944 | INFO     | monitor loop #460: job 0:6930761791 is in state 'finished'
[2025-12-16 18:05:05] 2025-12-16 17:04:31,945 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 18:05:05] 2025-12-16 17:04:32,482 | INFO     | time since job start (5983s) is within the limit (174528.0s)
[2025-12-16 18:05:05] 2025-12-16 17:04:33,676 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-16 18:05:05] 2025-12-16 17:04:33,677 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 4300.159499999999
[2025-12-16 18:05:05] 2025-12-16 17:04:33,678 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6930761791/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 18:05:05] 2025-12-16 17:04:33,678 | INFO     | extracted standard info from prmon json
[2025-12-16 18:05:05] 2025-12-16 17:04:33,678 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 18:05:05] 2025-12-16 17:04:33,678 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 18:05:05] 2025-12-16 17:04:33,678 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 18:05:05] 2025-12-16 17:04:33,678 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 18:05:05] 2025-12-16 17:04:33,679 | INFO     | fitting pss+swap vs Time
[2025-12-16 18:05:05] 2025-12-16 17:04:33,679 | INFO     | sum of square deviations: 233641590.0
[2025-12-16 18:05:05] 2025-12-16 17:04:33,679 | INFO     | sum of deviations: -24199872603.000004
[2025-12-16 18:05:05] 2025-12-16 17:04:33,680 | INFO     | mean x: 1765901758.0
[2025-12-16 18:05:05] 2025-12-16 17:04:33,680 | INFO     | mean y: 2489322.912087912
[2025-12-16 18:05:05] 2025-12-16 17:04:33,680 | INFO     | intersect: 182909126677.21933
[2025-12-16 18:05:05] 2025-12-16 17:04:33,680 | INFO     | chi2: 0.1848656801722387
[2025-12-16 18:05:05] 2025-12-16 17:04:33,680 | INFO     | current memory leak: -103.58 B/s (using 91 data points, chi2=0.18)
[2025-12-16 18:05:05] 2025-12-16 17:04:33,680 | INFO     | could have reported an average CPU frequency of 4257 MHz (7 samples)
[2025-12-16 18:05:05] 2025-12-16 17:04:33,680 | INFO     | ..............................
[2025-12-16 18:05:05] 2025-12-16 17:04:33,680 | INFO     | . Timing measurements:
[2025-12-16 18:05:05] 2025-12-16 17:04:33,680 | INFO     | . get job = 0 s
[2025-12-16 18:05:05] 2025-12-16 17:04:33,680 | INFO     | . initial setup = 1 s
[2025-12-16 18:05:05] 2025-12-16 17:04:33,680 | INFO     | . payload setup = 2 s
[2025-12-16 18:05:05] 2025-12-16 17:04:33,680 | INFO     | . stage-in = 0 s
[2025-12-16 18:05:05] 2025-12-16 17:04:33,680 | INFO     | . payload execution = 5961 s
[2025-12-16 18:05:05] 2025-12-16 17:04:33,680 | INFO     | . stage-out = 0 s
[2025-12-16 18:05:05] 2025-12-16 17:04:33,680 | INFO     | . log creation = 0 s
[2025-12-16 18:05:05] 2025-12-16 17:04:33,680 | INFO     | ..............................
[2025-12-16 18:05:05] 2025-12-16 17:04:33,711 | INFO     | 
[2025-12-16 18:05:05] 2025-12-16 17:04:33,711 | INFO     | job summary report
[2025-12-16 18:05:05] 2025-12-16 17:04:33,711 | INFO     | --------------------------------------------------
[2025-12-16 18:05:05] 2025-12-16 17:04:33,711 | INFO     | PanDA job id: 6930761791
[2025-12-16 18:05:05] 2025-12-16 17:04:33,711 | INFO     | task id: 47886831
[2025-12-16 18:05:05] 2025-12-16 17:04:33,711 | INFO     | errors: (none)
[2025-12-16 18:05:05] 2025-12-16 17:04:33,711 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 18:05:05] 2025-12-16 17:04:33,711 | INFO     | pilot state: finished 
[2025-12-16 18:05:05] 2025-12-16 17:04:33,711 | INFO     | transexitcode: 0
[2025-12-16 18:05:05] 2025-12-16 17:04:33,711 | INFO     | exeerrorcode: 0
[2025-12-16 18:05:05] 2025-12-16 17:04:33,712 | INFO     | exeerrordiag: 
[2025-12-16 18:05:05] 2025-12-16 17:04:33,712 | INFO     | exitcode: 0
[2025-12-16 18:05:05] 2025-12-16 17:04:33,712 | INFO     | exitmsg: OK
[2025-12-16 18:05:05] 2025-12-16 17:04:33,712 | INFO     | cpuconsumptiontime: 17211 s
[2025-12-16 18:05:05] 2025-12-16 17:04:33,712 | INFO     | nevents: 400
[2025-12-16 18:05:05] 2025-12-16 17:04:33,712 | INFO     | neventsw: 0
[2025-12-16 18:05:05] 2025-12-16 17:04:33,712 | INFO     | pid: 3108653
[2025-12-16 18:05:05] 2025-12-16 17:04:33,712 | INFO     | pgrp: 3108653
[2025-12-16 18:05:05] 2025-12-16 17:04:33,712 | INFO     | corecount: 3
[2025-12-16 18:05:05] 2025-12-16 17:04:33,712 | INFO     | event service: False
[2025-12-16 18:05:05] 2025-12-16 17:04:33,712 | INFO     | sizes: {0: 2283997, 3: 2284259, 11: 2284287, 5968: 2311151, 5969: 2320211, 5972: 2320349}
[2025-12-16 18:05:05] 2025-12-16 17:04:33,712 | INFO     | --------------------------------------------------
[2025-12-16 18:05:05] 2025-12-16 17:04:33,712 | INFO     | 
[2025-12-16 18:05:05] 2025-12-16 17:04:33,712 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-12-16 18:05:05] 2025-12-16 17:04:33,724 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 18:05:05] 2025-12-16 17:04:33,724 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 18:05:05] 2025-12-16 17:04:33,724 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 18:05:05] 2025-12-16 17:04:33,724 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 18:05:05] 2025-12-16 17:04:33,724 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 18:05:05] 2025-12-16 17:04:33,724 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 18:05:05] 2025-12-16 17:04:33,724 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 18:05:05] 2025-12-16 17:04:33,724 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 18:05:05] 2025-12-16 17:04:33,724 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 18:05:05] 2025-12-16 17:04:33,724 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 18:05:05] 2025-12-16 17:04:33,724 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 18:05:05] 2025-12-16 17:04:33,724 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 18:05:05] 2025-12-16 17:04:33,724 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 18:05:05] 2025-12-16 17:04:33,724 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 18:05:05] 2025-12-16 17:04:33,724 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 18:05:05] 2025-12-16 17:04:33,724 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 18:05:05] 2025-12-16 17:04:33,724 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 18:05:05] 2025-12-16 17:04:33,724 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 18:05:05] 2025-12-16 17:04:33,724 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 18:05:05] 2025-12-16 17:04:33,725 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 18:05:05] 2025-12-16 17:04:33,725 | INFO     | job 6930761791 has completed (purged errors)
[2025-12-16 18:05:05] 2025-12-16 17:04:33,725 | INFO     | overall cleanup function is called
[2025-12-16 18:05:05] 2025-12-16 17:04:34,731 | INFO     | --- collectZombieJob: --- 10, [3108653]
[2025-12-16 18:05:05] 2025-12-16 17:04:34,731 | INFO     | zombie collector waiting for pid 3108653
[2025-12-16 18:05:05] 2025-12-16 17:04:34,731 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 18:05:05] 2025-12-16 17:04:34,731 | INFO     | collected zombie processes
[2025-12-16 18:05:05] 2025-12-16 17:04:34,731 | INFO     | will attempt to kill all subprocesses of pid=3108653
[2025-12-16 18:05:05] 2025-12-16 17:04:34,770 | INFO     | process IDs to be killed: [3108653] (in reverse order)
[2025-12-16 18:05:05] 2025-12-16 17:04:34,796 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 18:05:05] 2025-12-16 17:04:34,796 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 18:05:05] 2025-12-16 17:04:34,797 | INFO     | did not find any defunct processes belonging to 3108653
[2025-12-16 18:05:05] 2025-12-16 17:04:34,798 | INFO     | did not find any defunct processes belonging to 3108653
[2025-12-16 18:05:05] 2025-12-16 17:04:34,798 | INFO     | ready for new job
[2025-12-16 18:05:05] 2025-12-16 17:04:34,798 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 18:05:05] 2025-12-16 17:04:34,799 | INFO     | ***************************************
[2025-12-16 18:05:05] 2025-12-16 17:04:34,799 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 18:05:05] 2025-12-16 17:04:34,799 | INFO     | ***************************************
[2025-12-16 18:05:05] 2025-12-16 17:04:34,799 | INFO     | 
[2025-12-16 18:05:05] 2025-12-16 17:04:34,799 | INFO     | architecture information:
[2025-12-16 18:05:05] 2025-12-16 17:04:34,800 | INFO     | executing command: cat /etc/os-release
[2025-12-16 18:05:05] 2025-12-16 17:04:34,810 | INFO     | cat /etc/os-release:
[2025-12-16 18:05:05] NAME="CentOS Linux"
[2025-12-16 18:05:05] VERSION="7 (Core)"
[2025-12-16 18:05:05] ID="centos"
[2025-12-16 18:05:05] ID_LIKE="rhel fedora"
[2025-12-16 18:05:05] VERSION_ID="7"
[2025-12-16 18:05:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 18:05:05] ANSI_COLOR="0;31"
[2025-12-16 18:05:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 18:05:05] HOME_URL="https://www.centos.org/"
[2025-12-16 18:05:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 18:05:05] 
[2025-12-16 18:05:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 18:05:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 18:05:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 18:05:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 18:05:05] 
[2025-12-16 18:05:05] 2025-12-16 17:04:34,810 | INFO     | ***************************************
[2025-12-16 18:05:05] 2025-12-16 17:04:35,312 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-16 18:05:05] 2025-12-16 17:04:35,325 | INFO     | sufficient remaining disk space (844709756928 B)
[2025-12-16 18:05:05] 2025-12-16 17:04:35,325 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 18:05:05] 2025-12-16 17:04:35,325 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 18:05:05] 2025-12-16 17:04:35,325 | INFO     | update_server=False
[2025-12-16 18:05:05] 2025-12-16 17:04:35,325 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 18:05:05] 2025-12-16 17:04:35,325 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 18:05:05] 2025-12-16 17:04:35,325 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 18:05:05] 2025-12-16 17:04:35,453 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 18:05:05] 2025-12-16 17:04:35,453 | INFO     | aborting loop
[2025-12-16 18:05:05] 2025-12-16 17:04:35,734 | INFO     | all payload control threads have been joined
[2025-12-16 18:05:05] 2025-12-16 17:04:35,776 | INFO     | all data control threads have been joined
[2025-12-16 18:05:05] 2025-12-16 17:04:36,330 | INFO     | [job] retrieve thread has finished
[2025-12-16 18:05:05] 2025-12-16 17:04:36,331 | INFO     | [job] queue monitor thread has finished
[2025-12-16 18:05:05] 2025-12-16 17:04:36,458 | INFO     | [job] job monitor thread has finished
[2025-12-16 18:05:05] 2025-12-16 17:04:36,739 | INFO     | [payload] control thread has finished
[2025-12-16 18:05:05] 2025-12-16 17:04:36,782 | INFO     | [data] control thread has finished
[2025-12-16 18:05:05] 2025-12-16 17:04:36,858 | INFO     | [data] copytool_in thread has finished
[2025-12-16 18:05:05] 2025-12-16 17:04:36,873 | INFO     | all job control threads have been joined
[2025-12-16 18:05:05] 2025-12-16 17:04:36,908 | INFO     | [payload] failed_post thread has finished
[2025-12-16 18:05:05] 2025-12-16 17:04:36,920 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 18:05:05] 2025-12-16 17:04:37,330 | INFO     | [data] copytool_out thread has finished
[2025-12-16 18:05:05] 2025-12-16 17:04:37,364 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 18:05:05] 2025-12-16 17:04:37,400 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 18:05:05] 2025-12-16 17:04:37,415 | INFO     | [payload] validate_post thread has finished
[2025-12-16 18:05:05] 2025-12-16 17:04:37,419 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 18:05:05] 2025-12-16 17:04:37,420 | INFO     | [job] validate thread has finished
[2025-12-16 18:05:05] 2025-12-16 17:04:37,554 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 18:05:05] 2025-12-16 17:04:37,878 | INFO     | [job] control thread has finished
[2025-12-16 18:05:05] 2025-12-16 17:04:41,370 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 18:05:05] 2025-12-16 17:04:58,254 | INFO     | [monitor] cgroup control has ended
[2025-12-16 18:05:05] 2025-12-16 17:04:58,713 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139843058816832)>', '<ExcThread(monitor, started 139842054780672)>']
[2025-12-16 18:05:05] 2025-12-16 17:05:03,738 | INFO     | all workflow threads have been joined
[2025-12-16 18:05:05] 2025-12-16 17:05:03,739 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 18:05:05] 2025-12-16 17:05:03,739 | INFO     | traces error code: 0
[2025-12-16 18:05:05] 2025-12-16 17:05:03,739 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 18:05:05] 2025-12-16 17:05:05,602 | INFO     | PID=3102208 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 18:05:05] 2025-12-16 17:05:05,602 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 18:05:05] 2025-12-16 17:05:05,602 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 18:05:05] 2025-12-16 17:05:05,603 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 18:05:05] 2025-12-16 17:05:05,603 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 18:05:05] 2025-12-16 17:05:05,603 | INFO     | [monitor] control thread has ended
[2025-12-16 18:05:05] 2025-12-16 17:05:05,650 [wrapper] ==== pilot stdout END ====
[2025-12-16 18:05:05] 2025-12-16 17:05:05,652 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 18:05:05] 2025-12-16 17:05:05,655 [wrapper] pilotpid: 3102208
[2025-12-16 18:05:05] 2025-12-16 17:05:05,658 [wrapper] Pilot exit status: 0
[2025-12-16 18:05:05] 2025-12-16 17:05:05,664 [wrapper] pandaids: 6930761791
[2025-12-16 18:05:05] 2025-12-16 17:05:05,681 [wrapper] cleanup supervisor_pilot 3120971 3102209
[2025-12-16 18:05:05] 2025-12-16 17:05:05,684 [wrapper] Test setup, not cleaning
[2025-12-16 18:05:05] 2025-12-16 17:05:05,687 [wrapper] apfmon messages muted
[2025-12-16 18:05:05] 2025-12-16 17:05:05,690 [wrapper] ==== wrapper stdout END ====
[2025-12-16 18:05:05] 2025-12-16 17:05:05,692 [wrapper] ==== wrapper stderr END ====
[2025-12-16 18:05:05]  *** Error codes and diagnostics ***
[2025-12-16 18:05:05]     "exeErrorCode": 0,
[2025-12-16 18:05:05]     "exeErrorDiag": "",
[2025-12-16 18:05:05]     "pilotErrorCode": 0,
[2025-12-16 18:05:05]     "pilotErrorDiag": "",
[2025-12-16 18:05:05]  *** Listing of results directory ***
[2025-12-16 18:05:05] total 337184
[2025-12-16 18:05:05] -rw-r--r-- 1 boinc boinc    579449 Dec 16 10:01 pilot3.tar.gz
[2025-12-16 18:05:05] -rwx------ 1 boinc boinc     36322 Dec 16 10:04 runpilot2-wrapper.sh
[2025-12-16 18:05:05] -rw-r--r-- 1 boinc boinc      5112 Dec 16 10:06 queuedata.json
[2025-12-16 18:05:05] -rw-r--r-- 1 boinc boinc       100 Dec 16 16:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 18:05:05] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 16:24 run_atlas
[2025-12-16 18:05:05] -rw-r--r-- 1 boinc boinc       105 Dec 16 16:24 job.xml
[2025-12-16 18:05:05] -rw-r--r-- 2 boinc boinc 191149356 Dec 16 16:24 EVNT.47886829._000527.pool.root.1
[2025-12-16 18:05:05] -rw-r--r-- 2 boinc boinc    592422 Dec 16 16:24 input.tar.gz
[2025-12-16 18:05:05] -rw-r--r-- 2 boinc boinc     15847 Dec 16 16:24 start_atlas.sh
[2025-12-16 18:05:05] drwxrwx--x 2 boinc boinc      4096 Dec 16 16:24 shared
[2025-12-16 18:05:05] -rw-r--r-- 1 boinc boinc         0 Dec 16 16:24 boinc_setup_complete
[2025-12-16 18:05:05] -rw-r--r-- 1 boinc boinc      6199 Dec 16 16:24 init_data.xml
[2025-12-16 18:05:05] -rw-r--r-- 1 boinc boinc         0 Dec 16 16:24 boinc_lockfile
[2025-12-16 18:05:05] -rw-r--r-- 1 boinc boinc      2540 Dec 16 16:24 pandaJob.out
[2025-12-16 18:05:05] -rw------- 1 boinc boinc    987386 Dec 16 16:24 agis_schedconf.cvmfs.json
[2025-12-16 18:05:05] -rw------- 1 boinc boinc   1516240 Dec 16 16:24 agis_ddmendpoints.agis.ALL.json
[2025-12-16 18:05:05] drwx------ 5 boinc boinc      4096 Dec 16 16:24 pilot3
[2025-12-16 18:05:05] -rw------- 1 boinc boinc 147961093 Dec 16 18:04 HITS.47886831._012798.pool.root.1
[2025-12-16 18:05:05] -rw-r--r-- 1 boinc boinc       529 Dec 16 18:04 boinc_task_state.xml
[2025-12-16 18:05:05] -rw------- 1 boinc boinc        95 Dec 16 18:04 pilot_heartbeat.json
[2025-12-16 18:05:05] -rw------- 1 boinc boinc      1014 Dec 16 18:04 memory_monitor_summary.json
[2025-12-16 18:05:05] -rw------- 1 boinc boinc    258560 Dec 16 18:04 log.47886831._012798.job.log.tgz.1
[2025-12-16 18:05:05] -rw------- 1 boinc boinc      7760 Dec 16 18:04 heartbeat.json
[2025-12-16 18:05:05] -rw-r--r-- 1 boinc boinc        27 Dec 16 18:05 wrapper_checkpoint.txt
[2025-12-16 18:05:05] -rw-r--r-- 1 boinc boinc      8192 Dec 16 18:05 boinc_mmap_file
[2025-12-16 18:05:05] -rw------- 1 boinc boinc       747 Dec 16 18:05 pilotlog.txt
[2025-12-16 18:05:05] -rw------- 1 boinc boinc    868027 Dec 16 18:05 log.47886831._012798.job.log.1
[2025-12-16 18:05:05] -rw------- 1 boinc boinc       357 Dec 16 18:05 output.list
[2025-12-16 18:05:05] -rw-r--r-- 1 boinc boinc       620 Dec 16 18:05 runtime_log
[2025-12-16 18:05:05] -rw------- 1 boinc boinc   1146880 Dec 16 18:05 result.tar.gz
[2025-12-16 18:05:05] -rw-r--r-- 1 boinc boinc      8917 Dec 16 18:05 runtime_log.err
[2025-12-16 18:05:05] -rw------- 1 boinc boinc       663 Dec 16 18:05 RCAODmg9fp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmyqZKDmoiqYin.diag
[2025-12-16 18:05:05] -rw-r--r-- 1 boinc boinc     21245 Dec 16 18:05 stderr.txt
[2025-12-16 18:05:05] HITS file was successfully produced:
[2025-12-16 18:05:05] -rw------- 1 boinc boinc 147961093 Dec 16 18:04 shared/HITS.pool.root.1
[2025-12-16 18:05:05]  *** Contents of shared directory: ***
[2025-12-16 18:05:05] total 332892
[2025-12-16 18:05:05] -rw-r--r-- 2 boinc boinc 191149356 Dec 16 16:24 ATLAS.root_0
[2025-12-16 18:05:05] -rw-r--r-- 2 boinc boinc    592422 Dec 16 16:24 input.tar.gz
[2025-12-16 18:05:05] -rw-r--r-- 2 boinc boinc     15847 Dec 16 16:24 start_atlas.sh
[2025-12-16 18:05:05] -rw------- 1 boinc boinc 147961093 Dec 16 18:04 HITS.pool.root.1
[2025-12-16 18:05:05] -rw------- 1 boinc boinc   1146880 Dec 16 18:05 result.tar.gz
18:05:07 (3098481): run_atlas exited; CPU time 17239.554878
18:05:07 (3098481): called boinc_finish(0)

</stderr_txt>
]]>

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