Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:38:21 (3036056): wrapper (7.7.26015): starting
00:38:21 (3036056): wrapper: running run_atlas (--nthreads 4)
[2025-12-17 00:38:21] Arguments: --nthreads 4
[2025-12-17 00:38:21] Threads: 4
[2025-12-17 00:38:21] Checking for CVMFS
[2025-12-17 00:38:21] No cvmfs_config command found, will try listing directly
[2025-12-17 00:38:21] CVMFS is ok
[2025-12-17 00:38:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 00:38:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 00:38:21] Further information can be found at the LHC@home message board.
[2025-12-17 00:38:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 00:38:21] Checking for apptainer binary...
[2025-12-17 00:38:21] which: no apptainer in ((null))
[2025-12-17 00:38:21] apptainer is not installed, using version from CVMFS
[2025-12-17 00:38:21] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 00:38:22] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2025-12-17 00:38:22] apptainer works
[2025-12-17 00:38:22] Set ATHENA_PROC_NUMBER=4
[2025-12-17 00:38:22] Set ATHENA_CORE_NUMBER=4
[2025-12-17 00:38:22] Starting ATLAS job with PandaID=6931012254
[2025-12-17 00:38:22] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 05:04:36]  *** The last 200 lines of the pilot log: ***
[2025-12-17 05:04:36] 2025-12-17 03:58:14,975 | INFO     | time since job start (15580s) is within the limit (174528.0s)
[2025-12-17 05:04:36] 2025-12-17 03:58:16,980 | INFO     | time since job start (15582s) is within the limit (174528.0s)
[2025-12-17 05:04:36] 2025-12-17 03:58:17,226 | INFO     | monitor loop #1131: job 0:6931012254 is in state 'finished'
[2025-12-17 05:04:36] 2025-12-17 03:58:17,226 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 05:04:36] 2025-12-17 03:58:18,985 | INFO     | time since job start (15584s) is within the limit (174528.0s)
[2025-12-17 05:04:36] 2025-12-17 03:58:19,729 | INFO     | monitor loop #1132: job 0:6931012254 is in state 'finished'
[2025-12-17 05:04:36] 2025-12-17 03:58:19,729 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 05:04:36] 2025-12-17 03:58:20,433 | INFO     | PID=3040042 has CPU usage=14.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-12-17 05:04:36] 2025-12-17 03:58:20,433 | INFO     | .. there are 3 such processes running
[2025-12-17 05:04:36] 2025-12-17 03:58:20,459 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-17 05:04:36] 2025-12-17 03:58:20,467 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2549.4081749999996
[2025-12-17 05:04:36] 2025-12-17 03:58:20,475 | INFO     | using path: /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6931012254/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 05:04:36] 2025-12-17 03:58:20,476 | INFO     | extracted standard info from prmon json
[2025-12-17 05:04:36] 2025-12-17 03:58:20,476 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 05:04:36] 2025-12-17 03:58:20,476 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 05:04:36] 2025-12-17 03:58:20,476 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 05:04:36] 2025-12-17 03:58:20,476 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 05:04:36] 2025-12-17 03:58:20,482 | INFO     | fitting pss+swap vs Time
[2025-12-17 05:04:36] 2025-12-17 03:58:20,482 | INFO     | sum of square deviations: 5141528960.0
[2025-12-17 05:04:36] 2025-12-17 03:58:20,484 | INFO     | sum of deviations: -46130109360.999985
[2025-12-17 05:04:36] 2025-12-17 03:58:20,485 | INFO     | mean x: 1765936088.0
[2025-12-17 05:04:36] 2025-12-17 03:58:20,485 | INFO     | mean y: 2370898.71372549
[2025-12-17 05:04:36] 2025-12-17 03:58:20,485 | INFO     | intersect: 15846456480.598007
[2025-12-17 05:04:36] 2025-12-17 03:58:20,485 | INFO     | chi2: 1.753469828575144
[2025-12-17 05:04:36] 2025-12-17 03:58:20,486 | INFO     | sum of square deviations: 4844974562.5
[2025-12-17 05:04:36] 2025-12-17 03:58:20,488 | INFO     | sum of deviations: -45043656661.00001
[2025-12-17 05:04:36] 2025-12-17 03:58:20,488 | INFO     | mean x: 1765935935.5
[2025-12-17 05:04:36] 2025-12-17 03:58:20,488 | INFO     | mean y: 2371457.48
[2025-12-17 05:04:36] 2025-12-17 03:58:20,489 | INFO     | intersect: 16420251662.601067
[2025-12-17 05:04:36] 2025-12-17 03:58:20,489 | INFO     | chi2: 1.7498532523663002
[2025-12-17 05:04:36] 2025-12-17 03:58:20,489 | INFO     | current chi2=1.7498532523663002 (change=0.2062525485130597 %)
[2025-12-17 05:04:36] 2025-12-17 03:58:20,489 | INFO     | right removable region: 249
[2025-12-17 05:04:36] 2025-12-17 03:58:20,490 | INFO     | sum of square deviations: 4844974562.5
[2025-12-17 05:04:36] 2025-12-17 03:58:20,492 | INFO     | sum of deviations: -72746526945.50005
[2025-12-17 05:04:36] 2025-12-17 03:58:20,492 | INFO     | mean x: 1765936240.5
[2025-12-17 05:04:36] 2025-12-17 03:58:20,492 | INFO     | mean y: 2384398.852
[2025-12-17 05:04:36] 2025-12-17 03:58:20,492 | INFO     | intersect: 26517637811.716187
[2025-12-17 05:04:36] 2025-12-17 03:58:20,493 | INFO     | chi2: 0.5139554838503534
[2025-12-17 05:04:36] 2025-12-17 03:58:20,493 | INFO     | current chi2=0.5139554838503534 (change=70.68923140422727 %)
[2025-12-17 05:04:36] 2025-12-17 03:58:20,493 | INFO     | sum of square deviations: 4560048290.0
[2025-12-17 05:04:36] 2025-12-17 03:58:20,495 | INFO     | sum of deviations: -64569218579.99999
[2025-12-17 05:04:36] 2025-12-17 03:58:20,496 | INFO     | mean x: 1765936393.0
[2025-12-17 05:04:36] 2025-12-17 03:58:20,496 | INFO     | mean y: 2380012.8163265307
[2025-12-17 05:04:36] 2025-12-17 03:58:20,496 | INFO     | intersect: 25007626823.041172
[2025-12-17 05:04:36] 2025-12-17 03:58:20,496 | INFO     | chi2: 0.5041047271320137
[2025-12-17 05:04:36] 2025-12-17 03:58:20,496 | INFO     | current chi2=0.5041047271320137 (change=1.9166556302778728 %)
[2025-12-17 05:04:36] 2025-12-17 03:58:20,497 | INFO     | left removable region: 20
[2025-12-17 05:04:36] 2025-12-17 03:58:20,497 | INFO     | sum of square deviations: 3723716330.0
[2025-12-17 05:04:36] 2025-12-17 03:58:20,499 | INFO     | sum of deviations: -37605978999.00001
[2025-12-17 05:04:36] 2025-12-17 03:58:20,499 | INFO     | mean x: 1765936515.0
[2025-12-17 05:04:36] 2025-12-17 03:58:20,499 | INFO     | mean y: 2365778.7991266376
[2025-12-17 05:04:36] 2025-12-17 03:58:20,499 | INFO     | intersect: 17836638212.9341
[2025-12-17 05:04:36] 2025-12-17 03:58:20,500 | INFO     | chi2: 0.3916847391856663
[2025-12-17 05:04:36] 2025-12-17 03:58:20,500 | INFO     | current memory leak: -10.10 B/s (using 229 data points, chi2=0.39)
[2025-12-17 05:04:36] 2025-12-17 03:58:20,500 | INFO     | could have reported an average CPU frequency of 2518 MHz (12 samples)
[2025-12-17 05:04:36] 2025-12-17 03:58:20,501 | INFO     | ..............................
[2025-12-17 05:04:36] 2025-12-17 03:58:20,501 | INFO     | . Timing measurements:
[2025-12-17 05:04:36] 2025-12-17 03:58:20,501 | INFO     | . get job = 0 s
[2025-12-17 05:04:36] 2025-12-17 03:58:20,501 | INFO     | . initial setup = 1 s
[2025-12-17 05:04:36] 2025-12-17 03:58:20,501 | INFO     | . payload setup = 6 s
[2025-12-17 05:04:36] 2025-12-17 03:58:20,501 | INFO     | . stage-in = 0 s
[2025-12-17 05:04:36] 2025-12-17 03:58:20,501 | INFO     | . payload execution = 15552 s
[2025-12-17 05:04:36] 2025-12-17 03:58:20,502 | INFO     | . stage-out = 1 s
[2025-12-17 05:04:36] 2025-12-17 03:58:20,502 | INFO     | . log creation = 0 s
[2025-12-17 05:04:36] 2025-12-17 03:58:20,502 | INFO     | ..............................
[2025-12-17 05:04:36] 2025-12-17 03:58:20,615 | INFO     | 
[2025-12-17 05:04:36] 2025-12-17 03:58:20,615 | INFO     | job summary report
[2025-12-17 05:04:36] 2025-12-17 03:58:20,616 | INFO     | --------------------------------------------------
[2025-12-17 05:04:36] 2025-12-17 03:58:20,616 | INFO     | PanDA job id: 6931012254
[2025-12-17 05:04:36] 2025-12-17 03:58:20,616 | INFO     | task id: 47886933
[2025-12-17 05:04:36] 2025-12-17 03:58:20,616 | INFO     | errors: (none)
[2025-12-17 05:04:36] 2025-12-17 03:58:20,616 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 05:04:36] 2025-12-17 03:58:20,616 | INFO     | pilot state: finished 
[2025-12-17 05:04:36] 2025-12-17 03:58:20,616 | INFO     | transexitcode: 0
[2025-12-17 05:04:36] 2025-12-17 03:58:20,616 | INFO     | exeerrorcode: 0
[2025-12-17 05:04:36] 2025-12-17 03:58:20,617 | INFO     | exeerrordiag: 
[2025-12-17 05:04:36] 2025-12-17 03:58:20,617 | INFO     | exitcode: 0
[2025-12-17 05:04:36] 2025-12-17 03:58:20,617 | INFO     | exitmsg: OK
[2025-12-17 05:04:36] 2025-12-17 03:58:20,617 | INFO     | cpuconsumptiontime: 59358 s
[2025-12-17 05:04:36] 2025-12-17 03:58:20,617 | INFO     | nevents: 400
[2025-12-17 05:04:36] 2025-12-17 03:58:20,617 | INFO     | neventsw: 0
[2025-12-17 05:04:36] 2025-12-17 03:58:20,617 | INFO     | pid: 3046980
[2025-12-17 05:04:36] 2025-12-17 03:58:20,617 | INFO     | pgrp: 3046980
[2025-12-17 05:04:36] 2025-12-17 03:58:20,618 | INFO     | corecount: 4
[2025-12-17 05:04:36] 2025-12-17 03:58:20,618 | INFO     | event service: False
[2025-12-17 05:04:36] 2025-12-17 03:58:20,618 | INFO     | sizes: {0: 2283747, 1: 2284002, 5: 2284264, 12: 2284320, 15561: 2315422, 15562: 2315421, 15563: 2324681, 15571: 2324819}
[2025-12-17 05:04:36] 2025-12-17 03:58:20,618 | INFO     | --------------------------------------------------
[2025-12-17 05:04:36] 2025-12-17 03:58:20,618 | INFO     | 
[2025-12-17 05:04:36] 2025-12-17 03:58:20,618 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2025-12-17 05:04:36] 2025-12-17 03:58:20,637 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 05:04:36] 2025-12-17 03:58:20,637 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 05:04:36] 2025-12-17 03:58:20,637 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 05:04:36] 2025-12-17 03:58:20,638 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 05:04:36] 2025-12-17 03:58:20,638 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 05:04:36] 2025-12-17 03:58:20,638 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 05:04:36] 2025-12-17 03:58:20,638 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 05:04:36] 2025-12-17 03:58:20,638 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 05:04:36] 2025-12-17 03:58:20,638 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 05:04:36] 2025-12-17 03:58:20,639 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 05:04:36] 2025-12-17 03:58:20,639 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 05:04:36] 2025-12-17 03:58:20,639 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 05:04:36] 2025-12-17 03:58:20,639 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 05:04:36] 2025-12-17 03:58:20,640 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 05:04:36] 2025-12-17 03:58:20,640 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 05:04:36] 2025-12-17 03:58:20,640 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 05:04:36] 2025-12-17 03:58:20,640 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 05:04:36] 2025-12-17 03:58:20,640 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 05:04:36] 2025-12-17 03:58:20,640 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 05:04:36] 2025-12-17 03:58:20,640 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 05:04:36] 2025-12-17 03:58:20,641 | INFO     | job 6931012254 has completed (purged errors)
[2025-12-17 05:04:36] 2025-12-17 03:58:20,641 | INFO     | overall cleanup function is called
[2025-12-17 05:04:36] 2025-12-17 03:58:21,649 | INFO     | --- collectZombieJob: --- 10, [3046980]
[2025-12-17 05:04:36] 2025-12-17 03:58:21,649 | INFO     | zombie collector waiting for pid 3046980
[2025-12-17 05:04:36] 2025-12-17 03:58:21,649 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 05:04:36] 2025-12-17 03:58:21,650 | INFO     | collected zombie processes
[2025-12-17 05:04:36] 2025-12-17 03:58:21,650 | INFO     | will attempt to kill all subprocesses of pid=3046980
[2025-12-17 05:04:36] 2025-12-17 03:58:22,010 | INFO     | process IDs to be killed: [3046980] (in reverse order)
[2025-12-17 05:04:36] 2025-12-17 03:58:22,099 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 05:04:36] 2025-12-17 03:58:22,099 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 05:04:36] 2025-12-17 03:58:22,109 | INFO     | did not find any defunct processes belonging to 3046980
[2025-12-17 05:04:36] 2025-12-17 03:58:22,117 | INFO     | did not find any defunct processes belonging to 3046980
[2025-12-17 05:04:36] 2025-12-17 03:58:22,117 | INFO     | ready for new job
[2025-12-17 05:04:36] 2025-12-17 03:58:22,118 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 05:04:36] 2025-12-17 03:58:22,120 | INFO     | ***************************************
[2025-12-17 05:04:36] 2025-12-17 03:58:22,121 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 05:04:36] 2025-12-17 03:58:22,121 | INFO     | ***************************************
[2025-12-17 05:04:36] 2025-12-17 03:58:22,121 | INFO     | 
[2025-12-17 05:04:36] 2025-12-17 03:58:22,124 | INFO     | architecture information:
[2025-12-17 05:04:36] 2025-12-17 03:58:22,124 | INFO     | executing command: cat /etc/os-release
[2025-12-17 05:04:36] 2025-12-17 03:58:22,139 | INFO     | cat /etc/os-release:
[2025-12-17 05:04:36] NAME="CentOS Linux"
[2025-12-17 05:04:36] VERSION="7 (Core)"
[2025-12-17 05:04:36] ID="centos"
[2025-12-17 05:04:36] ID_LIKE="rhel fedora"
[2025-12-17 05:04:36] VERSION_ID="7"
[2025-12-17 05:04:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 05:04:36] ANSI_COLOR="0;31"
[2025-12-17 05:04:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 05:04:36] HOME_URL="https://www.centos.org/"
[2025-12-17 05:04:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 05:04:36] 
[2025-12-17 05:04:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 05:04:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 05:04:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 05:04:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 05:04:36] 
[2025-12-17 05:04:36] 2025-12-17 03:58:22,139 | INFO     | ***************************************
[2025-12-17 05:04:36] 2025-12-17 03:58:22,642 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2025-12-17 05:04:36] 2025-12-17 03:58:22,658 | INFO     | sufficient remaining disk space (1670617497600 B)
[2025-12-17 05:04:36] 2025-12-17 03:58:22,659 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 05:04:36] 2025-12-17 03:58:22,659 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 05:04:36] 2025-12-17 03:58:22,659 | INFO     | update_server=False
[2025-12-17 05:04:36] 2025-12-17 03:58:22,659 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 05:04:36] 2025-12-17 03:58:22,861 | INFO     | all data control threads have been joined
[2025-12-17 05:04:36] 2025-12-17 03:58:23,224 | INFO     | all job control threads have been joined
[2025-12-17 05:04:36] 2025-12-17 03:58:23,237 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 05:04:36] 2025-12-17 03:58:23,237 | INFO     | aborting loop
[2025-12-17 05:04:36] 2025-12-17 03:58:23,421 | INFO     | all payload control threads have been joined
[2025-12-17 05:04:36] 2025-12-17 03:58:23,664 | INFO     | [job] retrieve thread has finished
[2025-12-17 05:04:36] 2025-12-17 03:58:23,865 | INFO     | [data] control thread has finished
[2025-12-17 05:04:36] 2025-12-17 03:58:23,930 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 05:04:36] 2025-12-17 03:58:23,959 | INFO     | [job] validate thread has finished
[2025-12-17 05:04:36] 2025-12-17 03:58:24,039 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 05:04:36] 2025-12-17 03:58:24,080 | INFO     | [payload] validate_post thread has finished
[2025-12-17 05:04:36] 2025-12-17 03:58:24,091 | INFO     | [data] copytool_in thread has finished
[2025-12-17 05:04:36] 2025-12-17 03:58:24,227 | INFO     | [job] control thread has finished
[2025-12-17 05:04:36] 2025-12-17 03:58:24,242 | INFO     | [job] job monitor thread has finished
[2025-12-17 05:04:36] 2025-12-17 03:58:24,357 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 05:04:36] 2025-12-17 03:58:24,426 | INFO     | [payload] control thread has finished
[2025-12-17 05:04:36] 2025-12-17 03:58:24,462 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 05:04:36] 2025-12-17 03:58:24,464 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 05:04:36] 2025-12-17 03:58:24,768 | INFO     | [payload] failed_post thread has finished
[2025-12-17 05:04:36] 2025-12-17 03:58:25,118 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 05:04:36] 2025-12-17 03:58:25,625 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 05:04:36] 2025-12-17 03:58:25,935 | INFO     | [data] copytool_out thread has finished
[2025-12-17 05:04:36] 2025-12-17 03:58:26,630 | INFO     | [job] queue monitor thread has finished
[2025-12-17 05:04:36] 2025-12-17 03:58:28,045 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 05:04:36] 2025-12-17 03:58:52,949 | INFO     | PID=3040042 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-17 05:04:36] 2025-12-17 03:58:52,949 | INFO     | .. there are 3 such processes running
[2025-12-17 05:04:36] 2025-12-17 03:58:52,950 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 05:04:36] 2025-12-17 03:58:52,951 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 05:04:36] 2025-12-17 03:58:52,951 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 05:04:36] 2025-12-17 03:58:59,681 | INFO     | [monitor] cgroup control has ended
[2025-12-17 05:04:36] 2025-12-17 03:59:00,774 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22996240062272)>', '<ExcThread(monitor, started 22995999352576)>']
[2025-12-17 05:04:36] 2025-12-17 03:59:00,983 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 05:04:36] 2025-12-17 03:59:00,983 | INFO     | [monitor] control thread has ended
[2025-12-17 05:04:36] 2025-12-17 03:59:05,799 | INFO     | all workflow threads have been joined
[2025-12-17 05:04:36] 2025-12-17 03:59:05,799 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 05:04:36] 2025-12-17 03:59:05,800 | INFO     | traces error code: 0
[2025-12-17 05:04:36] 2025-12-17 03:59:05,800 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 05:04:36] 2025-12-17 03:59:05,941 [wrapper] ==== pilot stdout END ====
[2025-12-17 05:04:36] 2025-12-17 03:59:05,944 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 05:04:36] 2025-12-17 03:59:05,947 [wrapper] pilotpid: 3040042
[2025-12-17 05:04:36] 2025-12-17 03:59:05,949 [wrapper] Pilot exit status: 0
[2025-12-17 05:04:36] 2025-12-17 03:59:05,959 [wrapper] pandaids: 6931012254
[2025-12-17 05:04:36] 2025-12-17 03:59:06,020 [wrapper] cleanup supervisor_pilot 3231933 3040043
[2025-12-17 05:04:36] 2025-12-17 03:59:06,023 [wrapper] Test setup, not cleaning
[2025-12-17 05:04:36] 2025-12-17 03:59:06,026 [wrapper] apfmon messages muted
[2025-12-17 05:04:36] 2025-12-17 03:59:06,028 [wrapper] ==== wrapper stdout END ====
[2025-12-17 05:04:36] 2025-12-17 03:59:06,030 [wrapper] ==== wrapper stderr END ====
[2025-12-17 05:04:36]  *** Error codes and diagnostics ***
[2025-12-17 05:04:36]     "exeErrorCode": 0,
[2025-12-17 05:04:36]     "exeErrorDiag": "",
[2025-12-17 05:04:36]     "pilotErrorCode": 0,
[2025-12-17 05:04:36]     "pilotErrorDiag": "",
[2025-12-17 05:04:36]  *** Listing of results directory ***
[2025-12-17 05:04:36] total 343688
[2025-12-17 05:04:36] -rw-r--r-- 1 boinc boinc    579449 Dec 16 10:01 pilot3.tar.gz
[2025-12-17 05:04:36] -rwx------ 1 boinc boinc     36322 Dec 16 10:01 runpilot2-wrapper.sh
[2025-12-17 05:04:36] -rw-r--r-- 1 boinc boinc      5112 Dec 16 10:02 queuedata.json
[2025-12-17 05:04:36] -rw-r--r-- 1 boinc boinc       100 Dec 17 00:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 05:04:36] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 00:38 run_atlas
[2025-12-17 05:04:36] -rw-r--r-- 1 boinc boinc       105 Dec 17 00:38 job.xml
[2025-12-17 05:04:36] -rw-r--r-- 1 boinc boinc      6425 Dec 17 00:38 init_data.xml
[2025-12-17 05:04:36] -rw-r--r-- 2 boinc boinc 191391568 Dec 17 00:38 EVNT.47886929._000247.pool.root.1
[2025-12-17 05:04:36] -rw-r--r-- 2 boinc boinc     15847 Dec 17 00:38 start_atlas.sh
[2025-12-17 05:04:36] drwxrwx--x 2 boinc boinc      4096 Dec 17 00:38 shared
[2025-12-17 05:04:36] -rw-r--r-- 2 boinc boinc    592396 Dec 17 00:38 input.tar.gz
[2025-12-17 05:04:36] -rw-r--r-- 1 boinc boinc         0 Dec 17 00:38 boinc_lockfile
[2025-12-17 05:04:36] -rw-r--r-- 1 boinc boinc      2512 Dec 17 00:38 pandaJob.out
[2025-12-17 05:04:36] -rw------- 1 boinc boinc    987401 Dec 17 00:38 agis_schedconf.cvmfs.json
[2025-12-17 05:04:36] drwx------ 5 boinc boinc      4096 Dec 17 00:38 pilot3
[2025-12-17 05:04:36] -rw------- 1 boinc boinc 151408830 Dec 17 04:57 HITS.47886933._006378.pool.root.1
[2025-12-17 05:04:36] -rw-r--r-- 1 boinc boinc       529 Dec 17 04:57 boinc_task_state.xml
[2025-12-17 05:04:36] -rw------- 1 boinc boinc      1034 Dec 17 04:58 memory_monitor_summary.json
[2025-12-17 05:04:36] -rw------- 1 boinc boinc   1516240 Dec 17 04:58 agis_ddmendpoints.agis.ALL.json
[2025-12-17 05:04:36] -rw------- 1 boinc boinc    408844 Dec 17 04:58 log.47886933._006378.job.log.tgz.1
[2025-12-17 05:04:36] -rw------- 1 boinc boinc      7822 Dec 17 04:58 heartbeat.json
[2025-12-17 05:04:36] -rw------- 1 boinc boinc        95 Dec 17 04:58 pilot_heartbeat.json
[2025-12-17 05:04:36] -rw------- 1 boinc boinc      4834 Dec 17 04:59 pilotlog.txt
[2025-12-17 05:04:36] -rw------- 1 boinc boinc   2203013 Dec 17 04:59 log.47886933._006378.job.log.1
[2025-12-17 05:04:36] -rw------- 1 boinc boinc       357 Dec 17 04:59 output.list
[2025-12-17 05:04:36] -rw-r--r-- 1 boinc boinc       620 Dec 17 04:59 runtime_log
[2025-12-17 05:04:36] -rw------- 1 boinc boinc   2631680 Dec 17 04:59 result.tar.gz
[2025-12-17 05:04:36] -rw------- 1 boinc boinc       666 Dec 17 04:59 wieMDm76fp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmRMVKDm1fiCIo.diag
[2025-12-17 05:04:36] -rw-r--r-- 1 boinc boinc      9206 Dec 17 04:59 runtime_log.err
[2025-12-17 05:04:36] -rw-r--r-- 1 boinc boinc        27 Dec 17 05:04 wrapper_checkpoint.txt
[2025-12-17 05:04:36] -rw-r--r-- 1 boinc boinc      8192 Dec 17 05:04 boinc_mmap_file
[2025-12-17 05:04:36] -rw-r--r-- 1 boinc boinc     21192 Dec 17 05:04 stderr.txt
[2025-12-17 05:04:36] HITS file was successfully produced:
[2025-12-17 05:04:36] -rw------- 1 boinc boinc 151408830 Dec 17 04:57 shared/HITS.pool.root.1
[2025-12-17 05:04:36]  *** Contents of shared directory: ***
[2025-12-17 05:04:36] total 337944
[2025-12-17 05:04:36] -rw-r--r-- 2 boinc boinc 191391568 Dec 17 00:38 ATLAS.root_0
[2025-12-17 05:04:36] -rw-r--r-- 2 boinc boinc     15847 Dec 17 00:38 start_atlas.sh
[2025-12-17 05:04:36] -rw-r--r-- 2 boinc boinc    592396 Dec 17 00:38 input.tar.gz
[2025-12-17 05:04:36] -rw------- 1 boinc boinc 151408830 Dec 17 04:57 HITS.pool.root.1
[2025-12-17 05:04:36] -rw------- 1 boinc boinc   2631680 Dec 17 04:59 result.tar.gz
05:04:38 (3036056): run_atlas exited; CPU time 59911.959731
05:04:38 (3036056): called boinc_finish(0)

</stderr_txt>
]]>

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