Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:32:16 (1603304): wrapper (7.7.26015): starting
13:32:16 (1603304): wrapper: running run_atlas (--nthreads 3)
[2025-12-17 13:32:16] Arguments: --nthreads 3
[2025-12-17 13:32:16] Threads: 3
[2025-12-17 13:32:16] Checking for CVMFS
[2025-12-17 13:32:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 13:32:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 13:32:16] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 13:32:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 13:32:16] 2.9.2.0 21575 6157 82120 154111 1 57 14328853 36864000 0 130560 0 4164804 99.990 221833 16166 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-17 13:32:16] CVMFS is ok
[2025-12-17 13:32:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 13:32:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 13:32:16] Further information can be found at the LHC@home message board.
[2025-12-17 13:32:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 13:32:16] Checking for apptainer binary...
[2025-12-17 13:32:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 13:32:16] Running /usr/bin/apptainer --version
[2025-12-17 13:32:16] apptainer version 1.4.1-1.1
[2025-12-17 13:32:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 13:32:16] cosA121b
[2025-12-17 13:32:16] apptainer works
[2025-12-17 13:32:16] Set ATHENA_PROC_NUMBER=3
[2025-12-17 13:32:16] Set ATHENA_CORE_NUMBER=3
[2025-12-17 13:32:16] Starting ATLAS job with PandaID=6931012795
[2025-12-17 13:32:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 14:59:33]  *** The last 200 lines of the pilot log: ***
[2025-12-17 14:59:33]  lfn=log.47886831._013408.job.log.tgz.1
[2025-12-17 14:59:33]  mtime=0
[2025-12-17 14:59:33]  protocol_id=None
[2025-12-17 14:59:33]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-17 14:59:33]  replicas=None
[2025-12-17 14:59:33]  scope=mc23_13p6TeV
[2025-12-17 14:59:33]  status=None
[2025-12-17 14:59:33]  status_code=0
[2025-12-17 14:59:33]  storage_token=
[2025-12-17 14:59:33]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6931012795/log.47886831._013408.job.log.tgz.1
[2025-12-17 14:59:33]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ba/2c/log.47886831._013408.job.log.tgz.1
[2025-12-17 14:59:33]  workdir=None
[2025-12-17 14:59:33] ]
[2025-12-17 14:59:33] 2025-12-17 13:58:32,575 | INFO     | transferring file log.47886831._013408.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6931012795/log.47886831._013408.job.log.tgz.1 to /local/data/boinc/
[2025-12-17 14:59:33] 2025-12-17 13:58:32,575 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6931012795/log.47886831._013408.job.log.tgz.1 /local/data/boinc/slots/0/log.47886831._0134
[2025-12-17 14:59:33] 2025-12-17 13:58:32,586 | INFO     | adding to output.list: log.47886831._013408.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ba/2c/log.47886831._013408.job.log.tg
[2025-12-17 14:59:33] 2025-12-17 13:58:32,587 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-17 14:59:33] 2025-12-17 13:58:32,587 | INFO     | summary of transferred files:
[2025-12-17 14:59:33] 2025-12-17 13:58:32,587 | INFO     |  -- lfn=log.47886831._013408.job.log.tgz.1, status_code=0, status=transferred
[2025-12-17 14:59:33] 2025-12-17 13:58:32,587 | INFO     | stage-out finished correctly
[2025-12-17 14:59:33] 2025-12-17 13:58:33,366 | INFO     | time since job start (5171s) is within the limit (174528.0s)
[2025-12-17 14:59:33] 2025-12-17 13:58:33,733 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-17 14:59:33] 2025-12-17 13:58:34,960 | INFO     | monitor loop #398: job 0:6931012795 is in state 'finished'
[2025-12-17 14:59:33] 2025-12-17 13:58:34,960 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 14:59:33] 2025-12-17 13:58:35,063 | INFO     | job 6931012795 has state=finished
[2025-12-17 14:59:33] 2025-12-17 13:58:35,063 | INFO     | preparing for final server update for job 6931012795 in state='finished'
[2025-12-17 14:59:33] 2025-12-17 13:58:35,063 | INFO     | this job has now completed (state=finished)
[2025-12-17 14:59:33] 2025-12-17 13:58:35,064 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-17 14:59:33] 2025-12-17 13:58:35,064 | INFO     | log transfer has been attempted: DONE
[2025-12-17 14:59:33] 2025-12-17 13:58:35,064 | INFO     | job 6931012795 has finished - writing final server update
[2025-12-17 14:59:33] 2025-12-17 13:58:35,064 | INFO     | total number of processed events: 400 (read)
[2025-12-17 14:59:33] 2025-12-17 13:58:35,064 | INFO     | executing command: lscpu
[2025-12-17 14:59:33] 2025-12-17 13:58:35,080 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-17 14:59:33] 2025-12-17 13:58:35,372 | INFO     | time since job start (5173s) is within the limit (174528.0s)
[2025-12-17 14:59:33] 2025-12-17 13:58:36,456 | INFO     | PID=1607029 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-17 14:59:33] 2025-12-17 13:58:37,457 | INFO     | time since job start (5175s) is within the limit (174528.0s)
[2025-12-17 14:59:33] 2025-12-17 13:58:37,463 | INFO     | monitor loop #399: job 0:6931012795 is in state 'finished'
[2025-12-17 14:59:33] 2025-12-17 13:58:37,463 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 14:59:33] 2025-12-17 13:58:39,230 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-17 14:59:33] 2025-12-17 13:58:39,231 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3739.5384166666663
[2025-12-17 14:59:33] 2025-12-17 13:58:39,232 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6931012795/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 14:59:33] 2025-12-17 13:58:39,232 | INFO     | extracted standard info from prmon json
[2025-12-17 14:59:33] 2025-12-17 13:58:39,232 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 14:59:33] 2025-12-17 13:58:39,232 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 14:59:33] 2025-12-17 13:58:39,232 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 14:59:33] 2025-12-17 13:58:39,232 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 14:59:33] 2025-12-17 13:58:39,233 | INFO     | fitting pss+swap vs Time
[2025-12-17 14:59:33] 2025-12-17 13:58:39,233 | INFO     | sum of square deviations: 147126479.5
[2025-12-17 14:59:33] 2025-12-17 13:58:39,233 | INFO     | sum of deviations: -1267153915.0000002
[2025-12-17 14:59:33] 2025-12-17 13:58:39,233 | INFO     | mean x: 1765977415.5
[2025-12-17 14:59:33] 2025-12-17 13:58:39,233 | INFO     | mean y: 2363649.2564102565
[2025-12-17 14:59:33] 2025-12-17 13:58:39,233 | INFO     | intersect: 15212169548.624832
[2025-12-17 14:59:33] 2025-12-17 13:58:39,233 | INFO     | chi2: 0.09154698400325736
[2025-12-17 14:59:33] 2025-12-17 13:58:39,233 | INFO     | current memory leak: -8.61 B/s (using 78 data points, chi2=0.09)
[2025-12-17 14:59:33] 2025-12-17 13:58:39,234 | INFO     | could have reported an average CPU frequency of 3878 MHz (6 samples)
[2025-12-17 14:59:33] 2025-12-17 13:58:39,234 | INFO     | ..............................
[2025-12-17 14:59:33] 2025-12-17 13:58:39,234 | INFO     | . Timing measurements:
[2025-12-17 14:59:33] 2025-12-17 13:58:39,234 | INFO     | . get job = 0 s
[2025-12-17 14:59:33] 2025-12-17 13:58:39,234 | INFO     | . initial setup = 1 s
[2025-12-17 14:59:33] 2025-12-17 13:58:39,234 | INFO     | . payload setup = 2 s
[2025-12-17 14:59:33] 2025-12-17 13:58:39,234 | INFO     | . stage-in = 0 s
[2025-12-17 14:59:33] 2025-12-17 13:58:39,234 | INFO     | . payload execution = 5150 s
[2025-12-17 14:59:33] 2025-12-17 13:58:39,234 | INFO     | . stage-out = 0 s
[2025-12-17 14:59:33] 2025-12-17 13:58:39,234 | INFO     | . log creation = 0 s
[2025-12-17 14:59:33] 2025-12-17 13:58:39,234 | INFO     | ..............................
[2025-12-17 14:59:33] 2025-12-17 13:58:39,263 | INFO     | 
[2025-12-17 14:59:33] 2025-12-17 13:58:39,263 | INFO     | job summary report
[2025-12-17 14:59:33] 2025-12-17 13:58:39,263 | INFO     | --------------------------------------------------
[2025-12-17 14:59:33] 2025-12-17 13:58:39,263 | INFO     | PanDA job id: 6931012795
[2025-12-17 14:59:33] 2025-12-17 13:58:39,263 | INFO     | task id: 47886831
[2025-12-17 14:59:33] 2025-12-17 13:58:39,263 | INFO     | errors: (none)
[2025-12-17 14:59:33] 2025-12-17 13:58:39,263 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 14:59:33] 2025-12-17 13:58:39,263 | INFO     | pilot state: finished 
[2025-12-17 14:59:33] 2025-12-17 13:58:39,263 | INFO     | transexitcode: 0
[2025-12-17 14:59:33] 2025-12-17 13:58:39,263 | INFO     | exeerrorcode: 0
[2025-12-17 14:59:33] 2025-12-17 13:58:39,263 | INFO     | exeerrordiag: 
[2025-12-17 14:59:33] 2025-12-17 13:58:39,263 | INFO     | exitcode: 0
[2025-12-17 14:59:33] 2025-12-17 13:58:39,263 | INFO     | exitmsg: OK
[2025-12-17 14:59:33] 2025-12-17 13:58:39,263 | INFO     | cpuconsumptiontime: 14807 s
[2025-12-17 14:59:33] 2025-12-17 13:58:39,263 | INFO     | nevents: 400
[2025-12-17 14:59:33] 2025-12-17 13:58:39,263 | INFO     | neventsw: 0
[2025-12-17 14:59:33] 2025-12-17 13:58:39,263 | INFO     | pid: 1613472
[2025-12-17 14:59:33] 2025-12-17 13:58:39,263 | INFO     | pgrp: 1613472
[2025-12-17 14:59:33] 2025-12-17 13:58:39,263 | INFO     | corecount: 3
[2025-12-17 14:59:33] 2025-12-17 13:58:39,263 | INFO     | event service: False
[2025-12-17 14:59:33] 2025-12-17 13:58:39,263 | INFO     | sizes: {0: 2283996, 2: 2284258, 11: 2284286, 5156: 2310873, 5157: 2319932, 5158: 2319932, 5164: 2320254}
[2025-12-17 14:59:33] 2025-12-17 13:58:39,263 | INFO     | --------------------------------------------------
[2025-12-17 14:59:33] 2025-12-17 13:58:39,263 | INFO     | 
[2025-12-17 14:59:33] 2025-12-17 13:58:39,263 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-12-17 14:59:33] 2025-12-17 13:58:39,275 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 14:59:33] 2025-12-17 13:58:39,276 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 14:59:33] 2025-12-17 13:58:39,276 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 14:59:33] 2025-12-17 13:58:39,276 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 14:59:33] 2025-12-17 13:58:39,276 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 14:59:33] 2025-12-17 13:58:39,276 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 14:59:33] 2025-12-17 13:58:39,276 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 14:59:33] 2025-12-17 13:58:39,276 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 14:59:33] 2025-12-17 13:58:39,276 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 14:59:33] 2025-12-17 13:58:39,276 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 14:59:33] 2025-12-17 13:58:39,276 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 14:59:33] 2025-12-17 13:58:39,276 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 14:59:33] 2025-12-17 13:58:39,276 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 14:59:33] 2025-12-17 13:58:39,276 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 14:59:33] 2025-12-17 13:58:39,276 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 14:59:33] 2025-12-17 13:58:39,276 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 14:59:33] 2025-12-17 13:58:39,276 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 14:59:33] 2025-12-17 13:58:39,276 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 14:59:33] 2025-12-17 13:58:39,276 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 14:59:33] 2025-12-17 13:58:39,276 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 14:59:33] 2025-12-17 13:58:39,276 | INFO     | job 6931012795 has completed (purged errors)
[2025-12-17 14:59:33] 2025-12-17 13:58:39,276 | INFO     | overall cleanup function is called
[2025-12-17 14:59:33] 2025-12-17 13:58:40,283 | INFO     | --- collectZombieJob: --- 10, [1613472]
[2025-12-17 14:59:33] 2025-12-17 13:58:40,283 | INFO     | zombie collector waiting for pid 1613472
[2025-12-17 14:59:33] 2025-12-17 13:58:40,283 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 14:59:33] 2025-12-17 13:58:40,283 | INFO     | collected zombie processes
[2025-12-17 14:59:33] 2025-12-17 13:58:40,283 | INFO     | will attempt to kill all subprocesses of pid=1613472
[2025-12-17 14:59:33] 2025-12-17 13:58:40,332 | INFO     | process IDs to be killed: [1613472] (in reverse order)
[2025-12-17 14:59:33] 2025-12-17 13:58:40,357 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 14:59:33] 2025-12-17 13:58:40,357 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 14:59:33] 2025-12-17 13:58:40,359 | INFO     | did not find any defunct processes belonging to 1613472
[2025-12-17 14:59:33] 2025-12-17 13:58:40,361 | INFO     | did not find any defunct processes belonging to 1613472
[2025-12-17 14:59:33] 2025-12-17 13:58:40,361 | INFO     | ready for new job
[2025-12-17 14:59:33] 2025-12-17 13:58:40,361 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 14:59:33] 2025-12-17 13:58:40,362 | INFO     | ***************************************
[2025-12-17 14:59:33] 2025-12-17 13:58:40,362 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 14:59:33] 2025-12-17 13:58:40,362 | INFO     | ***************************************
[2025-12-17 14:59:33] 2025-12-17 13:58:40,362 | INFO     | 
[2025-12-17 14:59:33] 2025-12-17 13:58:40,362 | INFO     | architecture information:
[2025-12-17 14:59:33] 2025-12-17 13:58:40,362 | INFO     | executing command: cat /etc/os-release
[2025-12-17 14:59:33] 2025-12-17 13:58:40,371 | INFO     | cat /etc/os-release:
[2025-12-17 14:59:33] NAME="CentOS Linux"
[2025-12-17 14:59:33] VERSION="7 (Core)"
[2025-12-17 14:59:33] ID="centos"
[2025-12-17 14:59:33] ID_LIKE="rhel fedora"
[2025-12-17 14:59:33] VERSION_ID="7"
[2025-12-17 14:59:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 14:59:33] ANSI_COLOR="0;31"
[2025-12-17 14:59:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 14:59:33] HOME_URL="https://www.centos.org/"
[2025-12-17 14:59:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 14:59:33] 
[2025-12-17 14:59:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 14:59:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 14:59:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 14:59:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 14:59:33] 
[2025-12-17 14:59:33] 2025-12-17 13:58:40,371 | INFO     | ***************************************
[2025-12-17 14:59:33] 2025-12-17 13:58:40,874 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-17 14:59:33] 2025-12-17 13:58:40,887 | INFO     | sufficient remaining disk space (344918589440 B)
[2025-12-17 14:59:33] 2025-12-17 13:58:40,887 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 14:59:33] 2025-12-17 13:58:40,887 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 14:59:33] 2025-12-17 13:58:40,887 | INFO     | update_server=False
[2025-12-17 14:59:33] 2025-12-17 13:58:40,887 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 14:59:33] 2025-12-17 13:58:40,887 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 14:59:33] 2025-12-17 13:58:40,887 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 14:59:33] 2025-12-17 13:58:40,972 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 14:59:33] 2025-12-17 13:58:40,973 | INFO     | aborting loop
[2025-12-17 14:59:33] 2025-12-17 13:58:41,173 | INFO     | all data control threads have been joined
[2025-12-17 14:59:33] 2025-12-17 13:58:41,232 | INFO     | all payload control threads have been joined
[2025-12-17 14:59:33] 2025-12-17 13:58:41,720 | INFO     | all job control threads have been joined
[2025-12-17 14:59:33] 2025-12-17 13:58:41,889 | INFO     | [job] retrieve thread has finished
[2025-12-17 14:59:33] 2025-12-17 13:58:41,892 | INFO     | [job] queue monitor thread has finished
[2025-12-17 14:59:33] 2025-12-17 13:58:41,978 | INFO     | [job] job monitor thread has finished
[2025-12-17 14:59:33] 2025-12-17 13:58:42,153 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 14:59:33] 2025-12-17 13:58:42,179 | INFO     | [data] control thread has finished
[2025-12-17 14:59:33] 2025-12-17 13:58:42,238 | INFO     | [payload] control thread has finished
[2025-12-17 14:59:33] 2025-12-17 13:58:42,329 | INFO     | [data] copytool_in thread has finished
[2025-12-17 14:59:33] 2025-12-17 13:58:42,432 | INFO     | [payload] failed_post thread has finished
[2025-12-17 14:59:33] 2025-12-17 13:58:42,724 | INFO     | [job] control thread has finished
[2025-12-17 14:59:33] 2025-12-17 13:58:42,838 | INFO     | [job] validate thread has finished
[2025-12-17 14:59:33] 2025-12-17 13:58:42,893 | INFO     | [data] copytool_out thread has finished
[2025-12-17 14:59:33] 2025-12-17 13:58:42,907 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 14:59:33] 2025-12-17 13:58:42,908 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 14:59:33] 2025-12-17 13:58:42,970 | INFO     | [payload] validate_post thread has finished
[2025-12-17 14:59:33] 2025-12-17 13:58:44,274 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 14:59:33] 2025-12-17 13:58:48,281 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 14:59:33] 2025-12-17 13:58:51,057 | INFO     | job.realtimelogging is not enabled
[2025-12-17 14:59:33] 2025-12-17 13:58:52,063 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 14:59:33] 2025-12-17 13:59:10,577 | INFO     | PID=1607029 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-17 14:59:33] 2025-12-17 13:59:10,578 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 14:59:33] 2025-12-17 13:59:10,578 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 14:59:33] 2025-12-17 13:59:10,578 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 14:59:33] 2025-12-17 13:59:27,697 | INFO     | [monitor] cgroup control has ended
[2025-12-17 14:59:33] 2025-12-17 13:59:28,090 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140317688301376)>', '<ExcThread(monitor, started 140316950640384)>']
[2025-12-17 14:59:33] 2025-12-17 13:59:28,668 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 14:59:33] 2025-12-17 13:59:28,668 | INFO     | [monitor] control thread has ended
[2025-12-17 14:59:33] 2025-12-17 13:59:33,116 | INFO     | all workflow threads have been joined
[2025-12-17 14:59:33] 2025-12-17 13:59:33,116 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 14:59:33] 2025-12-17 13:59:33,116 | INFO     | traces error code: 0
[2025-12-17 14:59:33] 2025-12-17 13:59:33,116 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 14:59:33] 2025-12-17 13:59:33,167 [wrapper] ==== pilot stdout END ====
[2025-12-17 14:59:33] 2025-12-17 13:59:33,169 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 14:59:33] 2025-12-17 13:59:33,171 [wrapper] pilotpid: 1607029
[2025-12-17 14:59:33] 2025-12-17 13:59:33,174 [wrapper] Pilot exit status: 0
[2025-12-17 14:59:33] 2025-12-17 13:59:33,181 [wrapper] pandaids: 6931012795
[2025-12-17 14:59:33] 2025-12-17 13:59:33,198 [wrapper] cleanup supervisor_pilot 1625312 1607030
[2025-12-17 14:59:33] 2025-12-17 13:59:33,200 [wrapper] Test setup, not cleaning
[2025-12-17 14:59:33] 2025-12-17 13:59:33,203 [wrapper] apfmon messages muted
[2025-12-17 14:59:33] 2025-12-17 13:59:33,205 [wrapper] ==== wrapper stdout END ====
[2025-12-17 14:59:33] 2025-12-17 13:59:33,207 [wrapper] ==== wrapper stderr END ====
[2025-12-17 14:59:33]  *** Error codes and diagnostics ***
[2025-12-17 14:59:33]     "exeErrorCode": 0,
[2025-12-17 14:59:33]     "exeErrorDiag": "",
[2025-12-17 14:59:33]     "pilotErrorCode": 0,
[2025-12-17 14:59:33]     "pilotErrorDiag": "",
[2025-12-17 14:59:33]  *** Listing of results directory ***
[2025-12-17 14:59:33] total 334860
[2025-12-17 14:59:33] -rw-r--r-- 1 boinc boinc    579449 Dec 16 10:01 pilot3.tar.gz
[2025-12-17 14:59:33] -rwx------ 1 boinc boinc     36322 Dec 16 10:01 runpilot2-wrapper.sh
[2025-12-17 14:59:33] -rw-r--r-- 1 boinc boinc      5112 Dec 16 10:02 queuedata.json
[2025-12-17 14:59:33] -rw-r--r-- 1 boinc boinc       100 Dec 17 13:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 14:59:33] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 13:32 run_atlas
[2025-12-17 14:59:33] -rw-r--r-- 1 boinc boinc       105 Dec 17 13:32 job.xml
[2025-12-17 14:59:33] -rw-r--r-- 2 boinc boinc 191485212 Dec 17 13:32 EVNT.47886829._000549.pool.root.1
[2025-12-17 14:59:33] drwxrwx--x 2 boinc boinc      4096 Dec 17 13:32 shared
[2025-12-17 14:59:33] -rw-r--r-- 2 boinc boinc    592417 Dec 17 13:32 input.tar.gz
[2025-12-17 14:59:33] -rw-r--r-- 2 boinc boinc     15847 Dec 17 13:32 start_atlas.sh
[2025-12-17 14:59:33] -rw-r--r-- 1 boinc boinc         0 Dec 17 13:32 boinc_setup_complete
[2025-12-17 14:59:33] -rw-r--r-- 1 boinc boinc      6440 Dec 17 13:32 init_data.xml
[2025-12-17 14:59:33] -rw-r--r-- 1 boinc boinc         0 Dec 17 13:32 boinc_lockfile
[2025-12-17 14:59:33] -rw-r--r-- 1 boinc boinc      2539 Dec 17 13:32 pandaJob.out
[2025-12-17 14:59:33] -rw------- 1 boinc boinc    987423 Dec 17 13:32 agis_schedconf.cvmfs.json
[2025-12-17 14:59:33] -rw------- 1 boinc boinc   1516240 Dec 17 13:32 agis_ddmendpoints.agis.ALL.json
[2025-12-17 14:59:33] drwx------ 5 boinc boinc      4096 Dec 17 13:32 pilot3
[2025-12-17 14:59:33] -rw------- 1 boinc boinc 145480217 Dec 17 14:58 HITS.47886831._013408.pool.root.1
[2025-12-17 14:59:33] -rw-r--r-- 1 boinc boinc       529 Dec 17 14:58 boinc_task_state.xml
[2025-12-17 14:59:33] -rw------- 1 boinc boinc      1020 Dec 17 14:58 memory_monitor_summary.json
[2025-12-17 14:59:33] -rw------- 1 boinc boinc    250135 Dec 17 14:58 log.47886831._013408.job.log.tgz.1
[2025-12-17 14:59:33] -rw------- 1 boinc boinc      7758 Dec 17 14:58 heartbeat.json
[2025-12-17 14:59:33] -rw-r--r-- 1 boinc boinc        27 Dec 17 14:59 wrapper_checkpoint.txt
[2025-12-17 14:59:33] -rw-r--r-- 1 boinc boinc      8192 Dec 17 14:59 boinc_mmap_file
[2025-12-17 14:59:33] -rw------- 1 boinc boinc        95 Dec 17 14:59 pilot_heartbeat.json
[2025-12-17 14:59:33] -rw------- 1 boinc boinc      4824 Dec 17 14:59 pilotlog.txt
[2025-12-17 14:59:33] -rw------- 1 boinc boinc    758849 Dec 17 14:59 log.47886831._013408.job.log.1
[2025-12-17 14:59:33] -rw------- 1 boinc boinc       357 Dec 17 14:59 output.list
[2025-12-17 14:59:33] -rw-r--r-- 1 boinc boinc       620 Dec 17 14:59 runtime_log
[2025-12-17 14:59:33] -rw------- 1 boinc boinc   1024000 Dec 17 14:59 result.tar.gz
[2025-12-17 14:59:33] -rw-r--r-- 1 boinc boinc      8907 Dec 17 14:59 runtime_log.err
[2025-12-17 14:59:33] -rw------- 1 boinc boinc       660 Dec 17 14:59 Z9pKDm76fp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPLVKDmz4CxRm.diag
[2025-12-17 14:59:33] -rw-r--r-- 1 boinc boinc     21779 Dec 17 14:59 stderr.txt
[2025-12-17 14:59:33] HITS file was successfully produced:
[2025-12-17 14:59:33] -rw------- 1 boinc boinc 145480217 Dec 17 14:58 shared/HITS.pool.root.1
[2025-12-17 14:59:33]  *** Contents of shared directory: ***
[2025-12-17 14:59:33] total 330676
[2025-12-17 14:59:33] -rw-r--r-- 2 boinc boinc 191485212 Dec 17 13:32 ATLAS.root_0
[2025-12-17 14:59:33] -rw-r--r-- 2 boinc boinc    592417 Dec 17 13:32 input.tar.gz
[2025-12-17 14:59:33] -rw-r--r-- 2 boinc boinc     15847 Dec 17 13:32 start_atlas.sh
[2025-12-17 14:59:33] -rw------- 1 boinc boinc 145480217 Dec 17 14:58 HITS.pool.root.1
[2025-12-17 14:59:33] -rw------- 1 boinc boinc   1024000 Dec 17 14:59 result.tar.gz
14:59:34 (1603304): run_atlas exited; CPU time 14830.918635
14:59:34 (1603304): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN