Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:45:34 (12468): wrapper (7.7.26015): starting
09:45:34 (12468): wrapper: running run_atlas (--nthreads 12)
[2025-12-16 09:45:34] Arguments: --nthreads 12
[2025-12-16 09:45:34] Threads: 12
[2025-12-16 09:45:34] Checking for CVMFS
[2025-12-16 09:45:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 09:45:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 09:45:34] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 09:45:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 09:45:34] 2.11.2.0 25590 217300 91140 154073 1 57 13904036 20275200 1 130560 2 111185023 99.963 9114206 27812 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-16 09:45:34] CVMFS is ok
[2025-12-16 09:45:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 09:45:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 09:45:34] Further information can be found at the LHC@home message board.
[2025-12-16 09:45:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 09:45:34] Checking for apptainer binary...
[2025-12-16 09:45:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 09:45:34] Running /usr/bin/apptainer --version
[2025-12-16 09:45:34] apptainer version 1.3.2-1.el7
[2025-12-16 09:45:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 09:45:36] c-205-24.aglt2.org
[2025-12-16 09:45:36] apptainer works
[2025-12-16 09:45:36] Set ATHENA_PROC_NUMBER=12
[2025-12-16 09:45:36] Set ATHENA_CORE_NUMBER=12
[2025-12-16 09:45:36] Starting ATLAS job with PandaID=6931012781
[2025-12-16 09:45:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 11:08:06]  *** The last 200 lines of the pilot log: ***
[2025-12-16 11:08:06]  protocol_id=None
[2025-12-16 11:08:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-16 11:08:06]  replicas=None
[2025-12-16 11:08:06]  scope=mc23_13p6TeV
[2025-12-16 11:08:06]  status=None
[2025-12-16 11:08:06]  status_code=0
[2025-12-16 11:08:06]  storage_token=
[2025-12-16 11:08:06]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6931012781/log.47886831._013394.job.log.tgz.1
[2025-12-16 11:08:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/50/log.47886831._013394.job.log.tgz.1
[2025-12-16 11:08:06]  workdir=None
[2025-12-16 11:08:06] ]
[2025-12-16 11:08:06] 2025-12-16 16:07:00,375 | INFO     | transferring file log.47886831._013394.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6931012781/log.47886831._013394.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-16 11:08:06] 2025-12-16 16:07:00,376 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6931012781/log.47886831._013394.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886831._013394.job
[2025-12-16 11:08:06] 2025-12-16 16:07:00,400 | INFO     | adding to output.list: log.47886831._013394.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/50/log.47886831._013394.job.log.tg
[2025-12-16 11:08:06] 2025-12-16 16:07:00,401 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-16 11:08:06] 2025-12-16 16:07:00,401 | INFO     | summary of transferred files:
[2025-12-16 11:08:06] 2025-12-16 16:07:00,402 | INFO     |  -- lfn=log.47886831._013394.job.log.tgz.1, status_code=0, status=transferred
[2025-12-16 11:08:06] 2025-12-16 16:07:00,402 | INFO     | stage-out finished correctly
[2025-12-16 11:08:06] 2025-12-16 16:07:00,855 | INFO     | monitor loop #364: job 0:6931012781 is in state 'finished'
[2025-12-16 11:08:06] 2025-12-16 16:07:00,855 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 11:08:06] 2025-12-16 16:07:01,203 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-16 11:08:06] 2025-12-16 16:07:01,284 | INFO     | job 6931012781 has state=finished
[2025-12-16 11:08:06] 2025-12-16 16:07:01,285 | INFO     | preparing for final server update for job 6931012781 in state='finished'
[2025-12-16 11:08:06] 2025-12-16 16:07:01,285 | INFO     | this job has now completed (state=finished)
[2025-12-16 11:08:06] 2025-12-16 16:07:01,285 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-16 11:08:06] 2025-12-16 16:07:01,286 | INFO     | log transfer has been attempted: DONE
[2025-12-16 11:08:06] 2025-12-16 16:07:01,286 | INFO     | job 6931012781 has finished - writing final server update
[2025-12-16 11:08:06] 2025-12-16 16:07:01,286 | INFO     | total number of processed events: 400 (read)
[2025-12-16 11:08:06] 2025-12-16 16:07:01,287 | INFO     | executing command: lscpu
[2025-12-16 11:08:06] 2025-12-16 16:07:01,314 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-16 11:08:06] 2025-12-16 16:07:01,464 | INFO     | time since job start (4868s) is within the limit (174528.0s)
[2025-12-16 11:08:06] 2025-12-16 16:07:03,358 | INFO     | monitor loop #365: job 0:6931012781 is in state 'finished'
[2025-12-16 11:08:06] 2025-12-16 16:07:03,358 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 11:08:06] 2025-12-16 16:07:03,469 | INFO     | time since job start (4870s) is within the limit (174528.0s)
[2025-12-16 11:08:06] 2025-12-16 16:07:05,470 | INFO     | time since job start (4872s) is within the limit (174528.0s)
[2025-12-16 11:08:06] 2025-12-16 16:07:05,861 | INFO     | monitor loop #366: job 0:6931012781 is in state 'finished'
[2025-12-16 11:08:06] 2025-12-16 16:07:05,861 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 11:08:06] 2025-12-16 16:07:06,054 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-16 11:08:06] 2025-12-16 16:07:06,058 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-12-16 11:08:06] 2025-12-16 16:07:06,060 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6931012781/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 11:08:06] 2025-12-16 16:07:06,060 | INFO     | extracted standard info from prmon json
[2025-12-16 11:08:06] 2025-12-16 16:07:06,060 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 11:08:06] 2025-12-16 16:07:06,061 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 11:08:06] 2025-12-16 16:07:06,061 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 11:08:06] 2025-12-16 16:07:06,061 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 11:08:06] 2025-12-16 16:07:06,063 | INFO     | fitting pss+swap vs Time
[2025-12-16 11:08:06] 2025-12-16 16:07:06,063 | INFO     | sum of square deviations: 120605052.0
[2025-12-16 11:08:06] 2025-12-16 16:07:06,063 | INFO     | sum of deviations: -4234289379.999999
[2025-12-16 11:08:06] 2025-12-16 16:07:06,063 | INFO     | mean x: 1765898883.0
[2025-12-16 11:08:06] 2025-12-16 16:07:06,063 | INFO     | mean y: 2693133.520547945
[2025-12-16 11:08:06] 2025-12-16 16:07:06,064 | INFO     | intersect: 62001148110.686516
[2025-12-16 11:08:06] 2025-12-16 16:07:06,064 | INFO     | chi2: 0.07161545509098556
[2025-12-16 11:08:06] 2025-12-16 16:07:06,064 | INFO     | current memory leak: -35.11 B/s (using 73 data points, chi2=0.07)
[2025-12-16 11:08:06] 2025-12-16 16:07:06,064 | INFO     | could have reported an average CPU frequency of 2037 MHz (6 samples)
[2025-12-16 11:08:06] 2025-12-16 16:07:06,064 | INFO     | ..............................
[2025-12-16 11:08:06] 2025-12-16 16:07:06,064 | INFO     | . Timing measurements:
[2025-12-16 11:08:06] 2025-12-16 16:07:06,065 | INFO     | . get job = 0 s
[2025-12-16 11:08:06] 2025-12-16 16:07:06,065 | INFO     | . initial setup = 2 s
[2025-12-16 11:08:06] 2025-12-16 16:07:06,065 | INFO     | . payload setup = 7 s
[2025-12-16 11:08:06] 2025-12-16 16:07:06,065 | INFO     | . stage-in = 0 s
[2025-12-16 11:08:06] 2025-12-16 16:07:06,065 | INFO     | . payload execution = 4838 s
[2025-12-16 11:08:06] 2025-12-16 16:07:06,065 | INFO     | . stage-out = 0 s
[2025-12-16 11:08:06] 2025-12-16 16:07:06,065 | INFO     | . log creation = 0 s
[2025-12-16 11:08:06] 2025-12-16 16:07:06,065 | INFO     | ..............................
[2025-12-16 11:08:06] 2025-12-16 16:07:06,145 | INFO     | 
[2025-12-16 11:08:06] 2025-12-16 16:07:06,145 | INFO     | job summary report
[2025-12-16 11:08:06] 2025-12-16 16:07:06,145 | INFO     | --------------------------------------------------
[2025-12-16 11:08:06] 2025-12-16 16:07:06,146 | INFO     | PanDA job id: 6931012781
[2025-12-16 11:08:06] 2025-12-16 16:07:06,146 | INFO     | task id: 47886831
[2025-12-16 11:08:06] 2025-12-16 16:07:06,146 | INFO     | errors: (none)
[2025-12-16 11:08:06] 2025-12-16 16:07:06,146 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 11:08:06] 2025-12-16 16:07:06,146 | INFO     | pilot state: finished 
[2025-12-16 11:08:06] 2025-12-16 16:07:06,146 | INFO     | transexitcode: 0
[2025-12-16 11:08:06] 2025-12-16 16:07:06,146 | INFO     | exeerrorcode: 0
[2025-12-16 11:08:06] 2025-12-16 16:07:06,147 | INFO     | exeerrordiag: 
[2025-12-16 11:08:06] 2025-12-16 16:07:06,147 | INFO     | exitcode: 0
[2025-12-16 11:08:06] 2025-12-16 16:07:06,147 | INFO     | exitmsg: OK
[2025-12-16 11:08:06] 2025-12-16 16:07:06,147 | INFO     | cpuconsumptiontime: 52217 s
[2025-12-16 11:08:06] 2025-12-16 16:07:06,147 | INFO     | nevents: 400
[2025-12-16 11:08:06] 2025-12-16 16:07:06,148 | INFO     | neventsw: 0
[2025-12-16 11:08:06] 2025-12-16 16:07:06,148 | INFO     | pid: 22954
[2025-12-16 11:08:06] 2025-12-16 16:07:06,148 | INFO     | pgrp: 22954
[2025-12-16 11:08:06] 2025-12-16 16:07:06,148 | INFO     | corecount: 12
[2025-12-16 11:08:06] 2025-12-16 16:07:06,148 | INFO     | event service: False
[2025-12-16 11:08:06] 2025-12-16 16:07:06,148 | INFO     | sizes: {0: 2283822, 1: 2284021, 6: 2284283, 11: 2284311, 4849: 2310521, 4850: 2310520, 4852: 2319758, 4857: 2319896}
[2025-12-16 11:08:06] 2025-12-16 16:07:06,148 | INFO     | --------------------------------------------------
[2025-12-16 11:08:06] 2025-12-16 16:07:06,148 | INFO     | 
[2025-12-16 11:08:06] 2025-12-16 16:07:06,148 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-16 11:08:06] 2025-12-16 16:07:06,172 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 11:08:06] 2025-12-16 16:07:06,172 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 11:08:06] 2025-12-16 16:07:06,172 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 11:08:06] 2025-12-16 16:07:06,173 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 11:08:06] 2025-12-16 16:07:06,173 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 11:08:06] 2025-12-16 16:07:06,173 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 11:08:06] 2025-12-16 16:07:06,173 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 11:08:06] 2025-12-16 16:07:06,173 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 11:08:06] 2025-12-16 16:07:06,174 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 11:08:06] 2025-12-16 16:07:06,174 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 11:08:06] 2025-12-16 16:07:06,174 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 11:08:06] 2025-12-16 16:07:06,174 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 11:08:06] 2025-12-16 16:07:06,174 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 11:08:06] 2025-12-16 16:07:06,174 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 11:08:06] 2025-12-16 16:07:06,175 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 11:08:06] 2025-12-16 16:07:06,175 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 11:08:06] 2025-12-16 16:07:06,175 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 11:08:06] 2025-12-16 16:07:06,175 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 11:08:06] 2025-12-16 16:07:06,175 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 11:08:06] 2025-12-16 16:07:06,175 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 11:08:06] 2025-12-16 16:07:06,176 | INFO     | job 6931012781 has completed (purged errors)
[2025-12-16 11:08:06] 2025-12-16 16:07:06,176 | INFO     | overall cleanup function is called
[2025-12-16 11:08:06] 2025-12-16 16:07:07,184 | INFO     | --- collectZombieJob: --- 10, [22954]
[2025-12-16 11:08:06] 2025-12-16 16:07:07,184 | INFO     | zombie collector waiting for pid 22954
[2025-12-16 11:08:06] 2025-12-16 16:07:07,184 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 11:08:06] 2025-12-16 16:07:07,185 | INFO     | collected zombie processes
[2025-12-16 11:08:06] 2025-12-16 16:07:07,185 | INFO     | will attempt to kill all subprocesses of pid=22954
[2025-12-16 11:08:06] 2025-12-16 16:07:07,275 | INFO     | process IDs to be killed: [22954] (in reverse order)
[2025-12-16 11:08:06] 2025-12-16 16:07:07,329 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 11:08:06] 2025-12-16 16:07:07,329 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 11:08:06] 2025-12-16 16:07:07,333 | INFO     | did not find any defunct processes belonging to 22954
[2025-12-16 11:08:06] 2025-12-16 16:07:07,336 | INFO     | did not find any defunct processes belonging to 22954
[2025-12-16 11:08:06] 2025-12-16 16:07:07,337 | INFO     | ready for new job
[2025-12-16 11:08:06] 2025-12-16 16:07:07,337 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 11:08:06] 2025-12-16 16:07:07,338 | INFO     | ***************************************
[2025-12-16 11:08:06] 2025-12-16 16:07:07,339 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 11:08:06] 2025-12-16 16:07:07,339 | INFO     | ***************************************
[2025-12-16 11:08:06] 2025-12-16 16:07:07,339 | INFO     | 
[2025-12-16 11:08:06] 2025-12-16 16:07:07,339 | INFO     | architecture information:
[2025-12-16 11:08:06] 2025-12-16 16:07:07,340 | INFO     | executing command: cat /etc/os-release
[2025-12-16 11:08:06] 2025-12-16 16:07:07,355 | INFO     | cat /etc/os-release:
[2025-12-16 11:08:06] NAME="CentOS Linux"
[2025-12-16 11:08:06] VERSION="7 (Core)"
[2025-12-16 11:08:06] ID="centos"
[2025-12-16 11:08:06] ID_LIKE="rhel fedora"
[2025-12-16 11:08:06] VERSION_ID="7"
[2025-12-16 11:08:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 11:08:06] ANSI_COLOR="0;31"
[2025-12-16 11:08:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 11:08:06] HOME_URL="https://www.centos.org/"
[2025-12-16 11:08:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 11:08:06] 
[2025-12-16 11:08:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 11:08:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 11:08:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 11:08:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 11:08:06] 
[2025-12-16 11:08:06] 2025-12-16 16:07:07,355 | INFO     | ***************************************
[2025-12-16 11:08:06] 2025-12-16 16:07:07,858 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-16 11:08:06] 2025-12-16 16:07:07,875 | INFO     | sufficient remaining disk space (29454499840 B)
[2025-12-16 11:08:06] 2025-12-16 16:07:07,875 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 11:08:06] 2025-12-16 16:07:07,875 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 11:08:06] 2025-12-16 16:07:07,875 | INFO     | update_server=False
[2025-12-16 11:08:06] 2025-12-16 16:07:07,876 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 11:08:06] 2025-12-16 16:07:07,876 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 11:08:06] 2025-12-16 16:07:07,876 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 11:08:06] 2025-12-16 16:07:08,364 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-16 11:08:06] 2025-12-16 16:07:08,364 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-16 11:08:06] 2025-12-16 16:07:08,365 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 11:08:06] 2025-12-16 16:07:08,365 | INFO     | will abort loop
[2025-12-16 11:08:06] 2025-12-16 16:07:08,495 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 11:08:06] 2025-12-16 16:07:08,607 | INFO     | all payload control threads have been joined
[2025-12-16 11:08:06] 2025-12-16 16:07:08,673 | INFO     | all data control threads have been joined
[2025-12-16 11:08:06] 2025-12-16 16:07:08,820 | INFO     | all job control threads have been joined
[2025-12-16 11:08:06] 2025-12-16 16:07:08,881 | INFO     | [job] retrieve thread has finished
[2025-12-16 11:08:06] 2025-12-16 16:07:08,882 | INFO     | [job] queue monitor thread has finished
[2025-12-16 11:08:06] 2025-12-16 16:07:08,885 | INFO     | [data] copytool_in thread has finished
[2025-12-16 11:08:06] 2025-12-16 16:07:09,183 | INFO     | [payload] validate_post thread has finished
[2025-12-16 11:08:06] 2025-12-16 16:07:09,370 | INFO     | [job] job monitor thread has finished
[2025-12-16 11:08:06] 2025-12-16 16:07:09,527 | INFO     | [job] validate thread has finished
[2025-12-16 11:08:06] 2025-12-16 16:07:09,612 | INFO     | [payload] control thread has finished
[2025-12-16 11:08:06] 2025-12-16 16:07:09,656 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 11:08:06] 2025-12-16 16:07:09,657 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 11:08:06] 2025-12-16 16:07:09,678 | INFO     | [data] control thread has finished
[2025-12-16 11:08:06] 2025-12-16 16:07:09,803 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 11:08:06] 2025-12-16 16:07:09,825 | INFO     | [job] control thread has finished
[2025-12-16 11:08:06] 2025-12-16 16:07:09,865 | INFO     | [payload] failed_post thread has finished
[2025-12-16 11:08:06] 2025-12-16 16:07:09,899 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 11:08:06] 2025-12-16 16:07:10,500 | INFO     | [data] copytool_out thread has finished
[2025-12-16 11:08:06] 2025-12-16 16:07:11,879 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 11:08:06] 2025-12-16 16:07:38,727 | INFO     | PID=16509 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 11:08:06] 2025-12-16 16:07:38,727 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 11:08:06] 2025-12-16 16:07:38,727 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 11:08:06] 2025-12-16 16:07:38,727 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 11:08:06] 2025-12-16 16:08:00,257 | INFO     | [monitor] cgroup control has ended
[2025-12-16 11:08:06] 2025-12-16 16:08:00,996 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140176027637568)>', '<ExcThread(monitor, started 140175283828480)>']
[2025-12-16 11:08:06] 2025-12-16 16:08:01,842 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 11:08:06] 2025-12-16 16:08:01,842 | INFO     | [monitor] control thread has ended
[2025-12-16 11:08:06] 2025-12-16 16:08:06,003 | INFO     | all workflow threads have been joined
[2025-12-16 11:08:06] 2025-12-16 16:08:06,003 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 11:08:06] 2025-12-16 16:08:06,003 | INFO     | traces error code: 0
[2025-12-16 11:08:06] 2025-12-16 16:08:06,004 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 11:08:06] 2025-12-16 16:08:06,111 [wrapper] ==== pilot stdout END ====
[2025-12-16 11:08:06] 2025-12-16 16:08:06,115 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 11:08:06] 2025-12-16 16:08:06,119 [wrapper] pilotpid: 16509
[2025-12-16 11:08:06] 2025-12-16 16:08:06,122 [wrapper] Pilot exit status: 0
[2025-12-16 11:08:06] 2025-12-16 16:08:06,139 [wrapper] pandaids: 6931012781
[2025-12-16 11:08:06] 2025-12-16 16:08:06,195 [wrapper] cleanup supervisor_pilot 18397 16510
[2025-12-16 11:08:06] 2025-12-16 16:08:06,199 [wrapper] Test setup, not cleaning
[2025-12-16 11:08:06] 2025-12-16 16:08:06,203 [wrapper] apfmon messages muted
[2025-12-16 11:08:06] 2025-12-16 16:08:06,207 [wrapper] ==== wrapper stdout END ====
[2025-12-16 11:08:06] 2025-12-16 16:08:06,211 [wrapper] ==== wrapper stderr END ====
[2025-12-16 11:08:06]  *** Error codes and diagnostics ***
[2025-12-16 11:08:06]     "exeErrorCode": 0,
[2025-12-16 11:08:06]     "exeErrorDiag": "",
[2025-12-16 11:08:06]     "pilotErrorCode": 0,
[2025-12-16 11:08:06]     "pilotErrorDiag": "",
[2025-12-16 11:08:06]  *** Listing of results directory ***
[2025-12-16 11:08:06] total 337644
[2025-12-16 11:08:06] -rw-r--r-- 1 boincer umatlas    579449 Dec 16 04:01 pilot3.tar.gz
[2025-12-16 11:08:06] -rwx------ 1 boincer umatlas     36322 Dec 16 04:01 runpilot2-wrapper.sh
[2025-12-16 11:08:06] -rw-r--r-- 1 boincer umatlas      5112 Dec 16 04:02 queuedata.json
[2025-12-16 11:08:06] -rw-r--r-- 1 boincer umatlas       100 Dec 16 09:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 11:08:06] -rwxr-xr-x 1 boincer umatlas      7986 Dec 16 09:45 run_atlas
[2025-12-16 11:08:06] -rw-r--r-- 1 boincer umatlas       105 Dec 16 09:45 job.xml
[2025-12-16 11:08:06] -rw-r--r-- 2 boincer umatlas 191783482 Dec 16 09:45 EVNT.47886829._000548.pool.root.1
[2025-12-16 11:08:06] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 09:45 start_atlas.sh
[2025-12-16 11:08:06] drwxrwx--x 2 boincer umatlas      4096 Dec 16 09:45 shared
[2025-12-16 11:08:06] -rw-r--r-- 2 boincer umatlas    592414 Dec 16 09:45 input.tar.gz
[2025-12-16 11:08:06] -rw-r--r-- 1 boincer umatlas         0 Dec 16 09:45 boinc_lockfile
[2025-12-16 11:08:06] -rw-r--r-- 1 boincer umatlas      2539 Dec 16 09:45 pandaJob.out
[2025-12-16 11:08:06] -rw------- 1 boincer umatlas        57 Dec 16 09:45 setup.sh.local
[2025-12-16 11:08:06] -rw------- 1 boincer umatlas    987355 Dec 16 09:45 agis_schedconf.cvmfs.json
[2025-12-16 11:08:06] -rw------- 1 boincer umatlas   1516240 Dec 16 09:45 agis_ddmendpoints.agis.ALL.json
[2025-12-16 11:08:06] drwx------ 5 boincer umatlas      4096 Dec 16 09:45 pilot3
[2025-12-16 11:08:06] -rw-r--r-- 1 boincer umatlas      5953 Dec 16 11:01 init_data.xml
[2025-12-16 11:08:06] -rw------- 1 boincer umatlas 147855624 Dec 16 11:06 HITS.47886831._013394.pool.root.1
[2025-12-16 11:08:06] -rw-r--r-- 1 boincer umatlas       529 Dec 16 11:06 boinc_task_state.xml
[2025-12-16 11:08:06] -rw------- 1 boincer umatlas      1058 Dec 16 11:06 memory_monitor_summary.json
[2025-12-16 11:08:06] -rw------- 1 boincer umatlas        95 Dec 16 11:06 pilot_heartbeat.json
[2025-12-16 11:08:06] -rw------- 1 boincer umatlas    392676 Dec 16 11:07 log.47886831._013394.job.log.tgz.1
[2025-12-16 11:08:06] -rw------- 1 boincer umatlas      7849 Dec 16 11:07 heartbeat.json
[2025-12-16 11:08:06] -rw-r--r-- 1 boincer umatlas      8192 Dec 16 11:08 boinc_mmap_file
[2025-12-16 11:08:06] -rw-r--r-- 1 boincer umatlas        27 Dec 16 11:08 wrapper_checkpoint.txt
[2025-12-16 11:08:06] -rw------- 1 boincer umatlas      4932 Dec 16 11:08 pilotlog.txt
[2025-12-16 11:08:06] -rw------- 1 boincer umatlas    703384 Dec 16 11:08 log.47886831._013394.job.log.1
[2025-12-16 11:08:06] -rw------- 1 boincer umatlas       357 Dec 16 11:08 output.list
[2025-12-16 11:08:06] -rw-r--r-- 1 boincer umatlas       620 Dec 16 11:08 runtime_log
[2025-12-16 11:08:06] -rw------- 1 boincer umatlas   1116160 Dec 16 11:08 result.tar.gz
[2025-12-16 11:08:06] -rw-r--r-- 1 boincer umatlas      9344 Dec 16 11:08 runtime_log.err
[2025-12-16 11:08:06] -rw------- 1 boincer umatlas       659 Dec 16 11:08 lTMKDm76fp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmDLVKDm2UFNUm.diag
[2025-12-16 11:08:06] -rw-r--r-- 1 boincer umatlas     21857 Dec 16 11:08 stderr.txt
[2025-12-16 11:08:06] HITS file was successfully produced:
[2025-12-16 11:08:06] -rw------- 1 boincer umatlas 147855624 Dec 16 11:06 shared/HITS.pool.root.1
[2025-12-16 11:08:06]  *** Contents of shared directory: ***
[2025-12-16 11:08:06] total 333376
[2025-12-16 11:08:06] -rw-r--r-- 2 boincer umatlas 191783482 Dec 16 09:45 ATLAS.root_0
[2025-12-16 11:08:06] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 09:45 start_atlas.sh
[2025-12-16 11:08:06] -rw-r--r-- 2 boincer umatlas    592414 Dec 16 09:45 input.tar.gz
[2025-12-16 11:08:06] -rw------- 1 boincer umatlas 147855624 Dec 16 11:06 HITS.pool.root.1
[2025-12-16 11:08:06] -rw------- 1 boincer umatlas   1116160 Dec 16 11:08 result.tar.gz
11:08:07 (12468): run_atlas exited; CPU time 52201.948027
11:08:07 (12468): called boinc_finish(0)

</stderr_txt>
]]>

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