Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
20:24:51 (780941): wrapper (7.7.26015): starting
20:24:51 (780941): wrapper: running run_atlas (--nthreads 4)
[2025-12-16 20:24:51] Arguments: --nthreads 4
[2025-12-16 20:24:51] Threads: 4
[2025-12-16 20:24:51] Checking for CVMFS
[2025-12-16 20:24:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 20:24:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 20:24:51] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 20:24:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 20:24:51] 2.13.3.0 908405 5189 57612 154094 2 57 3845319 4096000 6454 130560 0 22802235 99.998 232290 4022 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-12-16 20:24:51] CVMFS is ok
[2025-12-16 20:24:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 20:24:51] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-16 20:24:51] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-16 20:24:51] Further information can be found at the LHC@home message board.
[2025-12-16 20:24:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 20:24:51] Checking for apptainer binary...
[2025-12-16 20:24:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 20:24:51] Running /usr/bin/apptainer --version
[2025-12-16 20:24:51] apptainer version 1.4.5
[2025-12-16 20:24:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 20:24:51] X-32-ubuntu
[2025-12-16 20:24:51] apptainer works
[2025-12-16 20:24:51] Set ATHENA_PROC_NUMBER=4
[2025-12-16 20:24:51] Set ATHENA_CORE_NUMBER=4
[2025-12-16 20:24:51] Starting ATLAS job with PandaID=6929438452
[2025-12-16 20:24:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 23:13:40]  *** The last 200 lines of the pilot log: ***
[2025-12-16 23:13:40] 2025-12-17 04:13:05,928 | WARNING  | process 791488 can no longer be monitored (due to stat problems) - aborting
[2025-12-16 23:13:40] 2025-12-17 04:13:05,929 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6929438452/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 23:13:40] 2025-12-17 04:13:06,104 | INFO     | number of running child processes to parent process 791488: 1
[2025-12-16 23:13:40] 2025-12-17 04:13:06,104 | INFO     | maximum number of monitored processes: 6
[2025-12-16 23:13:40] 2025-12-17 04:13:06,401 | INFO     | time since job start (10086s) is within the limit (174528.0s)
[2025-12-16 23:13:40] 2025-12-17 04:13:07,600 | INFO     | PID=784791 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-16 23:13:40] 2025-12-17 04:13:07,601 | INFO     | .. there are 8 such processes running
[2025-12-16 23:13:40] 2025-12-17 04:13:07,780 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-16 23:13:40] 2025-12-17 04:13:07,787 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3879.4162187499996
[2025-12-16 23:13:40] 2025-12-17 04:13:07,791 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6929438452/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 23:13:40] 2025-12-17 04:13:07,791 | INFO     | extracted standard info from prmon json
[2025-12-16 23:13:40] 2025-12-17 04:13:07,791 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 23:13:40] 2025-12-17 04:13:07,791 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 23:13:40] 2025-12-17 04:13:07,792 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 23:13:40] 2025-12-17 04:13:07,792 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 23:13:40] 2025-12-17 04:13:07,793 | INFO     | fitting pss+swap vs Time
[2025-12-16 23:13:40] 2025-12-17 04:13:07,794 | INFO     | sum of square deviations: 1392881930.0
[2025-12-16 23:13:40] 2025-12-17 04:13:07,794 | INFO     | sum of deviations: -23816958035.000004
[2025-12-16 23:13:40] 2025-12-17 04:13:07,794 | INFO     | mean x: 1765939725.0
[2025-12-16 23:13:40] 2025-12-17 04:13:07,794 | INFO     | mean y: 2370516.496969697
[2025-12-16 23:13:40] 2025-12-17 04:13:07,795 | INFO     | intersect: 30198262513.36166
[2025-12-16 23:13:40] 2025-12-17 04:13:07,795 | INFO     | chi2: 1.2065095802190071
[2025-12-16 23:13:40] 2025-12-17 04:13:07,795 | INFO     | sum of square deviations: 1270051720.0
[2025-12-16 23:13:40] 2025-12-17 04:13:07,795 | INFO     | sum of deviations: -22814681461.499996
[2025-12-16 23:13:40] 2025-12-17 04:13:07,796 | INFO     | mean x: 1765939572.5
[2025-12-16 23:13:40] 2025-12-17 04:13:07,796 | INFO     | mean y: 2371761.25625
[2025-12-16 23:13:40] 2025-12-17 04:13:07,796 | INFO     | intersect: 31724976590.959545
[2025-12-16 23:13:40] 2025-12-17 04:13:07,796 | INFO     | chi2: 1.2019651611976778
[2025-12-16 23:13:40] 2025-12-17 04:13:07,796 | INFO     | current chi2=1.2019651611976778 (change=0.376658345348935 %)
[2025-12-16 23:13:40] 2025-12-17 04:13:07,796 | INFO     | right removable region: 159
[2025-12-16 23:13:40] 2025-12-17 04:13:07,796 | INFO     | sum of square deviations: 1270051720.0
[2025-12-16 23:13:40] 2025-12-17 04:13:07,797 | INFO     | sum of deviations: -34829094207.5
[2025-12-16 23:13:40] 2025-12-17 04:13:07,797 | INFO     | mean x: 1765939877.5
[2025-12-16 23:13:40] 2025-12-17 04:13:07,797 | INFO     | mean y: 2383756.66875
[2025-12-16 23:13:40] 2025-12-17 04:13:07,797 | INFO     | intersect: 48430400812.72101
[2025-12-16 23:13:40] 2025-12-17 04:13:07,797 | INFO     | chi2: 0.14573336254778763
[2025-12-16 23:13:40] 2025-12-17 04:13:07,797 | INFO     | current chi2=0.14573336254778763 (change=87.92107705258884 %)
[2025-12-16 23:13:40] 2025-12-17 04:13:07,798 | INFO     | sum of square deviations: 1154663510.0
[2025-12-16 23:13:40] 2025-12-17 04:13:07,798 | INFO     | sum of deviations: -27505243064.0
[2025-12-16 23:13:40] 2025-12-17 04:13:07,798 | INFO     | mean x: 1765940030.0
[2025-12-16 23:13:40] 2025-12-17 04:13:07,798 | INFO     | mean y: 2374070.251612903
[2025-12-16 23:13:40] 2025-12-17 04:13:07,798 | INFO     | intersect: 42068837018.922646
[2025-12-16 23:13:40] 2025-12-17 04:13:07,799 | INFO     | chi2: 0.11908087196920392
[2025-12-16 23:13:40] 2025-12-17 04:13:07,799 | INFO     | current chi2=0.11908087196920392 (change=18.28853058258644 %)
[2025-12-16 23:13:40] 2025-12-17 04:13:07,799 | INFO     | left removable region: 20
[2025-12-16 23:13:40] 2025-12-17 04:13:07,799 | INFO     | sum of square deviations: 832722590.0
[2025-12-16 23:13:40] 2025-12-17 04:13:07,800 | INFO     | sum of deviations: -13460298979.0
[2025-12-16 23:13:40] 2025-12-17 04:13:07,800 | INFO     | mean x: 1765940152.0
[2025-12-16 23:13:40] 2025-12-17 04:13:07,800 | INFO     | mean y: 2355699.3884892086
[2025-12-16 23:13:40] 2025-12-17 04:13:07,800 | INFO     | intersect: 28547375025.621376
[2025-12-16 23:13:40] 2025-12-17 04:13:07,800 | INFO     | chi2: 0.039088592933691935
[2025-12-16 23:13:40] 2025-12-17 04:13:07,800 | INFO     | current memory leak: -16.16 B/s (using 139 data points, chi2=0.04)
[2025-12-16 23:13:40] 2025-12-17 04:13:07,800 | INFO     | could have reported an average CPU frequency of 3933 MHz (9 samples)
[2025-12-16 23:13:40] 2025-12-17 04:13:07,801 | INFO     | ..............................
[2025-12-16 23:13:40] 2025-12-17 04:13:07,801 | INFO     | . Timing measurements:
[2025-12-16 23:13:40] 2025-12-17 04:13:07,801 | INFO     | . get job = 0 s
[2025-12-16 23:13:40] 2025-12-17 04:13:07,801 | INFO     | . initial setup = 2 s
[2025-12-16 23:13:40] 2025-12-17 04:13:07,801 | INFO     | . payload setup = 4 s
[2025-12-16 23:13:40] 2025-12-17 04:13:07,801 | INFO     | . stage-in = 0 s
[2025-12-16 23:13:40] 2025-12-17 04:13:07,801 | INFO     | . payload execution = 10062 s
[2025-12-16 23:13:40] 2025-12-17 04:13:07,801 | INFO     | . stage-out = 0 s
[2025-12-16 23:13:40] 2025-12-17 04:13:07,801 | INFO     | . log creation = 0 s
[2025-12-16 23:13:40] 2025-12-17 04:13:07,801 | INFO     | ..............................
[2025-12-16 23:13:40] 2025-12-17 04:13:07,866 | INFO     | 
[2025-12-16 23:13:40] 2025-12-17 04:13:07,866 | INFO     | job summary report
[2025-12-16 23:13:40] 2025-12-17 04:13:07,866 | INFO     | --------------------------------------------------
[2025-12-16 23:13:40] 2025-12-17 04:13:07,866 | INFO     | PanDA job id: 6929438452
[2025-12-16 23:13:40] 2025-12-17 04:13:07,866 | INFO     | task id: 47898763
[2025-12-16 23:13:40] 2025-12-17 04:13:07,866 | INFO     | errors: (none)
[2025-12-16 23:13:40] 2025-12-17 04:13:07,866 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 23:13:40] 2025-12-17 04:13:07,866 | INFO     | pilot state: finished 
[2025-12-16 23:13:40] 2025-12-17 04:13:07,866 | INFO     | transexitcode: 0
[2025-12-16 23:13:40] 2025-12-17 04:13:07,866 | INFO     | exeerrorcode: 0
[2025-12-16 23:13:40] 2025-12-17 04:13:07,866 | INFO     | exeerrordiag: 
[2025-12-16 23:13:40] 2025-12-17 04:13:07,866 | INFO     | exitcode: 0
[2025-12-16 23:13:40] 2025-12-17 04:13:07,866 | INFO     | exitmsg: OK
[2025-12-16 23:13:40] 2025-12-17 04:13:07,866 | INFO     | cpuconsumptiontime: 38962 s
[2025-12-16 23:13:40] 2025-12-17 04:13:07,866 | INFO     | nevents: 400
[2025-12-16 23:13:40] 2025-12-17 04:13:07,866 | INFO     | neventsw: 0
[2025-12-16 23:13:40] 2025-12-17 04:13:07,867 | INFO     | pid: 791488
[2025-12-16 23:13:40] 2025-12-17 04:13:07,867 | INFO     | pgrp: 791488
[2025-12-16 23:13:40] 2025-12-17 04:13:07,867 | INFO     | corecount: 4
[2025-12-16 23:13:40] 2025-12-17 04:13:07,867 | INFO     | event service: False
[2025-12-16 23:13:40] 2025-12-17 04:13:07,867 | INFO     | sizes: {0: 2283730, 1: 2283985, 4: 2284247, 11: 2284275, 10069: 2312964, 10070: 2322146, 10073: 2322348}
[2025-12-16 23:13:40] 2025-12-17 04:13:07,867 | INFO     | --------------------------------------------------
[2025-12-16 23:13:40] 2025-12-17 04:13:07,867 | INFO     | 
[2025-12-16 23:13:40] 2025-12-17 04:13:07,867 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-12-16 23:13:40] 2025-12-17 04:13:07,881 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 23:13:40] 2025-12-17 04:13:07,882 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 23:13:40] 2025-12-17 04:13:07,882 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 23:13:40] 2025-12-17 04:13:07,882 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 23:13:40] 2025-12-17 04:13:07,882 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 23:13:40] 2025-12-17 04:13:07,882 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 23:13:40] 2025-12-17 04:13:07,882 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 23:13:40] 2025-12-17 04:13:07,882 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 23:13:40] 2025-12-17 04:13:07,882 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 23:13:40] 2025-12-17 04:13:07,882 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 23:13:40] 2025-12-17 04:13:07,882 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 23:13:40] 2025-12-17 04:13:07,882 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 23:13:40] 2025-12-17 04:13:07,882 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 23:13:40] 2025-12-17 04:13:07,882 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 23:13:40] 2025-12-17 04:13:07,883 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 23:13:40] 2025-12-17 04:13:07,883 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 23:13:40] 2025-12-17 04:13:07,883 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 23:13:40] 2025-12-17 04:13:07,883 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 23:13:40] 2025-12-17 04:13:07,883 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 23:13:40] 2025-12-17 04:13:07,883 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 23:13:40] 2025-12-17 04:13:07,883 | INFO     | job 6929438452 has completed (purged errors)
[2025-12-16 23:13:40] 2025-12-17 04:13:07,883 | INFO     | overall cleanup function is called
[2025-12-16 23:13:40] 2025-12-17 04:13:08,891 | INFO     | --- collectZombieJob: --- 10, [791488]
[2025-12-16 23:13:40] 2025-12-17 04:13:08,891 | INFO     | zombie collector waiting for pid 791488
[2025-12-16 23:13:40] 2025-12-17 04:13:08,891 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 23:13:40] 2025-12-17 04:13:08,891 | INFO     | collected zombie processes
[2025-12-16 23:13:40] 2025-12-17 04:13:08,891 | INFO     | will attempt to kill all subprocesses of pid=791488
[2025-12-16 23:13:40] 2025-12-17 04:13:09,059 | INFO     | process IDs to be killed: [791488] (in reverse order)
[2025-12-16 23:13:40] 2025-12-17 04:13:09,124 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 23:13:40] 2025-12-17 04:13:09,124 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 23:13:40] 2025-12-17 04:13:09,129 | INFO     | did not find any defunct processes belonging to 791488
[2025-12-16 23:13:40] 2025-12-17 04:13:09,134 | INFO     | did not find any defunct processes belonging to 791488
[2025-12-16 23:13:40] 2025-12-17 04:13:09,134 | INFO     | ready for new job
[2025-12-16 23:13:40] 2025-12-17 04:13:09,134 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 23:13:40] 2025-12-17 04:13:09,135 | INFO     | ***************************************
[2025-12-16 23:13:40] 2025-12-17 04:13:09,135 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 23:13:40] 2025-12-17 04:13:09,135 | INFO     | ***************************************
[2025-12-16 23:13:40] 2025-12-17 04:13:09,136 | INFO     | 
[2025-12-16 23:13:40] 2025-12-17 04:13:09,137 | INFO     | architecture information:
[2025-12-16 23:13:40] 2025-12-17 04:13:09,137 | INFO     | executing command: cat /etc/os-release
[2025-12-16 23:13:40] 2025-12-17 04:13:09,149 | INFO     | cat /etc/os-release:
[2025-12-16 23:13:40] NAME="CentOS Linux"
[2025-12-16 23:13:40] VERSION="7 (Core)"
[2025-12-16 23:13:40] ID="centos"
[2025-12-16 23:13:40] ID_LIKE="rhel fedora"
[2025-12-16 23:13:40] VERSION_ID="7"
[2025-12-16 23:13:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 23:13:40] ANSI_COLOR="0;31"
[2025-12-16 23:13:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 23:13:40] HOME_URL="https://www.centos.org/"
[2025-12-16 23:13:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 23:13:40] 
[2025-12-16 23:13:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 23:13:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 23:13:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 23:13:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 23:13:40] 
[2025-12-16 23:13:40] 2025-12-17 04:13:09,150 | INFO     | ***************************************
[2025-12-16 23:13:40] 2025-12-17 04:13:09,651 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-12-16 23:13:40] 2025-12-17 04:13:09,665 | INFO     | sufficient remaining disk space (1795106537472 B)
[2025-12-16 23:13:40] 2025-12-17 04:13:09,665 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 23:13:40] 2025-12-17 04:13:09,665 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 23:13:40] 2025-12-17 04:13:09,665 | INFO     | update_server=False
[2025-12-16 23:13:40] 2025-12-17 04:13:09,665 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 23:13:40] 2025-12-17 04:13:09,665 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 23:13:40] 2025-12-17 04:13:09,665 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 23:13:40] 2025-12-17 04:13:09,666 | INFO     | aborting loop
[2025-12-16 23:13:40] 2025-12-17 04:13:10,082 | INFO     | all payload control threads have been joined
[2025-12-16 23:13:40] 2025-12-17 04:13:10,218 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 23:13:40] 2025-12-17 04:13:10,532 | INFO     | all job control threads have been joined
[2025-12-16 23:13:40] 2025-12-17 04:13:10,584 | INFO     | all data control threads have been joined
[2025-12-16 23:13:40] 2025-12-17 04:13:10,669 | INFO     | [job] retrieve thread has finished
[2025-12-16 23:13:40] 2025-12-17 04:13:10,671 | INFO     | [job] queue monitor thread has finished
[2025-12-16 23:13:40] 2025-12-17 04:13:10,671 | INFO     | [job] job monitor thread has finished
[2025-12-16 23:13:40] 2025-12-17 04:13:10,774 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 23:13:40] 2025-12-17 04:13:11,087 | INFO     | [payload] control thread has finished
[2025-12-16 23:13:40] 2025-12-17 04:13:11,088 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 23:13:40] 2025-12-17 04:13:11,133 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 23:13:40] 2025-12-17 04:13:11,173 | INFO     | [job] validate thread has finished
[2025-12-16 23:13:40] 2025-12-17 04:13:11,364 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 23:13:40] 2025-12-17 04:13:11,434 | INFO     | [data] copytool_in thread has finished
[2025-12-16 23:13:40] 2025-12-17 04:13:11,534 | INFO     | [job] control thread has finished
[2025-12-16 23:13:40] 2025-12-17 04:13:11,554 | INFO     | [payload] validate_post thread has finished
[2025-12-16 23:13:40] 2025-12-17 04:13:11,590 | INFO     | [data] control thread has finished
[2025-12-16 23:13:40] 2025-12-17 04:13:12,005 | INFO     | [payload] failed_post thread has finished
[2025-12-16 23:13:40] 2025-12-17 04:13:12,224 | INFO     | [data] copytool_out thread has finished
[2025-12-16 23:13:40] 2025-12-17 04:13:14,780 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 23:13:40] 2025-12-17 04:13:16,379 | INFO     | [monitor] cgroup control has ended
[2025-12-16 23:13:40] 2025-12-17 04:13:20,475 | INFO     | job.realtimelogging is not enabled
[2025-12-16 23:13:40] 2025-12-17 04:13:21,480 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 23:13:40] 2025-12-17 04:13:23,536 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 133355982550848)>', '<ExcThread(monitor, started 133355471349504)>']
[2025-12-16 23:13:40] 2025-12-17 04:13:28,555 | INFO     | all workflow threads have been joined
[2025-12-16 23:13:40] 2025-12-17 04:13:28,555 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 23:13:40] 2025-12-17 04:13:28,555 | INFO     | traces error code: 0
[2025-12-16 23:13:40] 2025-12-17 04:13:28,555 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 23:13:40] 2025-12-17 04:13:39,865 | INFO     | PID=784791 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-16 23:13:40] 2025-12-17 04:13:39,865 | INFO     | .. there are 8 such processes running
[2025-12-16 23:13:40] 2025-12-17 04:13:39,865 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 23:13:40] 2025-12-17 04:13:39,865 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 23:13:40] 2025-12-17 04:13:39,865 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 23:13:40] 2025-12-17 04:13:39,865 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 23:13:40] 2025-12-17 04:13:39,865 | CRITICAL | thread 'MainThread' is not alive
[2025-12-16 23:13:40] 2025-12-17 04:13:39,865 | INFO     | [monitor] control thread has ended
[2025-12-16 23:13:40] 2025-12-17 04:13:39,940 [wrapper] ==== pilot stdout END ====
[2025-12-16 23:13:40] 2025-12-17 04:13:39,942 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 23:13:40] 2025-12-17 04:13:39,944 [wrapper] pilotpid: 784791
[2025-12-16 23:13:40] 2025-12-17 04:13:39,946 [wrapper] Pilot exit status: 0
[2025-12-16 23:13:40] 2025-12-17 04:13:39,954 [wrapper] pandaids: 6929438452
[2025-12-16 23:13:40] 2025-12-17 04:13:39,996 [wrapper] cleanup supervisor_pilot 1058175 784792
[2025-12-16 23:13:40] 2025-12-17 04:13:39,999 [wrapper] Test setup, not cleaning
[2025-12-16 23:13:40] 2025-12-17 04:13:40,001 [wrapper] apfmon messages muted
[2025-12-16 23:13:40] 2025-12-17 04:13:40,003 [wrapper] ==== wrapper stdout END ====
[2025-12-16 23:13:40] 2025-12-17 04:13:40,005 [wrapper] ==== wrapper stderr END ====
[2025-12-16 23:13:40]  *** Error codes and diagnostics ***
[2025-12-16 23:13:40]     "exeErrorCode": 0,
[2025-12-16 23:13:40]     "exeErrorDiag": "",
[2025-12-16 23:13:40]     "pilotErrorCode": 0,
[2025-12-16 23:13:40]     "pilotErrorDiag": "",
[2025-12-16 23:13:40]  *** Listing of results directory ***
[2025-12-16 23:13:40] total 439168
[2025-12-16 23:13:40] -rw-r--r-- 1 boinc boinc    579449 Dec 14 03:33 pilot3.tar.gz
[2025-12-16 23:13:40] -rwx------ 1 boinc boinc     36322 Dec 14 03:37 runpilot2-wrapper.sh
[2025-12-16 23:13:40] -rw-r--r-- 1 boinc boinc      5112 Dec 14 03:39 queuedata.json
[2025-12-16 23:13:40] -rw-r--r-- 1 boinc boinc       100 Dec 16 20:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 23:13:40] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 20:24 run_atlas
[2025-12-16 23:13:40] -rw-r--r-- 1 boinc boinc       105 Dec 16 20:24 job.xml
[2025-12-16 23:13:40] -rw-r--r-- 1 boinc boinc      9668 Dec 16 20:24 init_data.xml
[2025-12-16 23:13:40] -rw-r--r-- 2 boinc boinc 223733694 Dec 16 20:24 EVNT.47898761._000405.pool.root.1
[2025-12-16 23:13:40] -rw-r--r-- 2 boinc boinc     15847 Dec 16 20:24 start_atlas.sh
[2025-12-16 23:13:40] drwxrwx--x 2 boinc boinc      4096 Dec 16 20:24 shared
[2025-12-16 23:13:40] -rw-r--r-- 2 boinc boinc    592390 Dec 16 20:24 input.tar.gz
[2025-12-16 23:13:40] -rw-r--r-- 1 boinc boinc         0 Dec 16 20:24 boinc_lockfile
[2025-12-16 23:13:40] -rw-r--r-- 1 boinc boinc      2507 Dec 16 20:24 pandaJob.out
[2025-12-16 23:13:40] -rw------- 1 boinc boinc    987393 Dec 16 20:24 agis_schedconf.cvmfs.json
[2025-12-16 23:13:40] -rw------- 1 boinc boinc   1516240 Dec 16 20:24 agis_ddmendpoints.agis.ALL.json
[2025-12-16 23:13:40] drwx------ 5 boinc boinc      4096 Dec 16 20:25 pilot3
[2025-12-16 23:13:40] -rw------- 1 boinc boinc 218494822 Dec 16 23:12 HITS.47898763._010112.pool.root.1
[2025-12-16 23:13:40] -rw------- 1 boinc boinc        95 Dec 16 23:12 pilot_heartbeat.json
[2025-12-16 23:13:40] -rw-r--r-- 1 boinc boinc       530 Dec 16 23:12 boinc_task_state.xml
[2025-12-16 23:13:40] -rw------- 1 boinc boinc      1026 Dec 16 23:13 memory_monitor_summary.json
[2025-12-16 23:13:40] -rw------- 1 boinc boinc    344977 Dec 16 23:13 log.47898763._010112.job.log.tgz.1
[2025-12-16 23:13:40] -rw------- 1 boinc boinc      7748 Dec 16 23:13 heartbeat.json
[2025-12-16 23:13:40] -rw-r--r-- 1 boinc boinc      8192 Dec 16 23:13 boinc_mmap_file
[2025-12-16 23:13:40] -rw-r--r-- 1 boinc boinc        28 Dec 16 23:13 wrapper_checkpoint.txt
[2025-12-16 23:13:40] -rw------- 1 boinc boinc       891 Dec 16 23:13 pilotlog.txt
[2025-12-16 23:13:40] -rw------- 1 boinc boinc   1436257 Dec 16 23:13 log.47898763._010112.job.log.1
[2025-12-16 23:13:40] -rw------- 1 boinc boinc       357 Dec 16 23:13 output.list
[2025-12-16 23:13:40] -rw-r--r-- 1 boinc boinc       620 Dec 16 23:13 runtime_log
[2025-12-16 23:13:40] -rw------- 1 boinc boinc   1802240 Dec 16 23:13 result.tar.gz
[2025-12-16 23:13:40] -rw-r--r-- 1 boinc boinc      8786 Dec 16 23:13 runtime_log.err
[2025-12-16 23:13:40] -rw------- 1 boinc boinc       647 Dec 16 23:13 QgNLDmJmwo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmKVKDmYsYhHn.diag
[2025-12-16 23:13:40] -rw-r--r-- 1 boinc boinc     21369 Dec 16 23:13 stderr.txt
[2025-12-16 23:13:40] HITS file was successfully produced:
[2025-12-16 23:13:40] -rw------- 1 boinc boinc 218494822 Dec 16 23:12 shared/HITS.pool.root.1
[2025-12-16 23:13:40]  *** Contents of shared directory: ***
[2025-12-16 23:13:40] total 434232
[2025-12-16 23:13:40] -rw-r--r-- 2 boinc boinc 223733694 Dec 16 20:24 ATLAS.root_0
[2025-12-16 23:13:40] -rw-r--r-- 2 boinc boinc     15847 Dec 16 20:24 start_atlas.sh
[2025-12-16 23:13:40] -rw-r--r-- 2 boinc boinc    592390 Dec 16 20:24 input.tar.gz
[2025-12-16 23:13:40] -rw------- 1 boinc boinc 218494822 Dec 16 23:12 HITS.pool.root.1
[2025-12-16 23:13:40] -rw------- 1 boinc boinc   1802240 Dec 16 23:13 result.tar.gz
23:13:41 (780941): run_atlas exited; CPU time 39122.386595
23:13:41 (780941): called boinc_finish(0)

</stderr_txt>
]]>

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