Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:51:24 (787222): wrapper (7.7.26015): starting
23:51:24 (787222): wrapper: running run_atlas (--nthreads 3)
[2025-12-16 23:51:24] Arguments: --nthreads 3
[2025-12-16 23:51:24] Threads: 3
[2025-12-16 23:51:24] Checking for CVMFS
[2025-12-16 23:51:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 23:51:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 23:51:24] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 23:51:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 23:51:24] 2.9.2.0 3540645 5404 83520 154090 2 57 20229470 36864000 0 130560 0 3788304 99.990 195983 13277 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-16 23:51:24] CVMFS is ok
[2025-12-16 23:51:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 23:51:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 23:51:24] Further information can be found at the LHC@home message board.
[2025-12-16 23:51:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 23:51:24] Checking for apptainer binary...
[2025-12-16 23:51:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 23:51:24] Running /usr/bin/apptainer --version
[2025-12-16 23:51:24] apptainer version 1.4.1-1.1
[2025-12-16 23:51:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 23:51:24] atlasA228b
[2025-12-16 23:51:24] apptainer works
[2025-12-16 23:51:24] Set ATHENA_PROC_NUMBER=3
[2025-12-16 23:51:24] Set ATHENA_CORE_NUMBER=3
[2025-12-16 23:51:24] Starting ATLAS job with PandaID=6929465757
[2025-12-16 23:51:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 01:44:43]  *** The last 200 lines of the pilot log: ***
[2025-12-17 01:44:43] 2025-12-17 00:43:45,693 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 01:44:43] 2025-12-17 00:43:45,693 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 01:44:43] 2025-12-17 00:43:45,693 | INFO     | job 6929465757 has completed (purged errors)
[2025-12-17 01:44:43] 2025-12-17 00:43:45,693 | INFO     | overall cleanup function is called
[2025-12-17 01:44:43] 2025-12-17 00:43:46,699 | INFO     | --- collectZombieJob: --- 10, [797389]
[2025-12-17 01:44:43] 2025-12-17 00:43:46,699 | INFO     | zombie collector waiting for pid 797389
[2025-12-17 01:44:43] 2025-12-17 00:43:46,700 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 01:44:43] 2025-12-17 00:43:46,700 | INFO     | collected zombie processes
[2025-12-17 01:44:43] 2025-12-17 00:43:46,700 | INFO     | will attempt to kill all subprocesses of pid=797389
[2025-12-17 01:44:43] 2025-12-17 00:43:46,742 | INFO     | process IDs to be killed: [797389] (in reverse order)
[2025-12-17 01:44:43] 2025-12-17 00:43:46,769 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 01:44:43] 2025-12-17 00:43:46,769 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 01:44:43] 2025-12-17 00:43:46,770 | INFO     | did not find any defunct processes belonging to 797389
[2025-12-17 01:44:43] 2025-12-17 00:43:46,771 | INFO     | did not find any defunct processes belonging to 797389
[2025-12-17 01:44:43] 2025-12-17 00:43:46,771 | INFO     | ready for new job
[2025-12-17 01:44:43] 2025-12-17 00:43:46,771 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 01:44:43] 2025-12-17 00:43:46,772 | INFO     | ***************************************
[2025-12-17 01:44:43] 2025-12-17 00:43:46,772 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 01:44:43] 2025-12-17 00:43:46,772 | INFO     | ***************************************
[2025-12-17 01:44:43] 2025-12-17 00:43:46,772 | INFO     | 
[2025-12-17 01:44:43] 2025-12-17 00:43:46,773 | INFO     | architecture information:
[2025-12-17 01:44:43] 2025-12-17 00:43:46,773 | INFO     | executing command: cat /etc/os-release
[2025-12-17 01:44:43] 2025-12-17 00:43:46,782 | INFO     | cat /etc/os-release:
[2025-12-17 01:44:43] NAME="CentOS Linux"
[2025-12-17 01:44:43] VERSION="7 (Core)"
[2025-12-17 01:44:43] ID="centos"
[2025-12-17 01:44:43] ID_LIKE="rhel fedora"
[2025-12-17 01:44:43] VERSION_ID="7"
[2025-12-17 01:44:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 01:44:43] ANSI_COLOR="0;31"
[2025-12-17 01:44:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 01:44:43] HOME_URL="https://www.centos.org/"
[2025-12-17 01:44:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 01:44:43] 
[2025-12-17 01:44:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 01:44:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 01:44:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 01:44:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 01:44:43] 
[2025-12-17 01:44:43] 2025-12-17 00:43:46,782 | INFO     | ***************************************
[2025-12-17 01:44:43] 2025-12-17 00:43:47,284 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-17 01:44:43] 2025-12-17 00:43:47,295 | INFO     | sufficient remaining disk space (284843573248 B)
[2025-12-17 01:44:43] 2025-12-17 00:43:47,296 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 01:44:43] 2025-12-17 00:43:47,296 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 01:44:43] 2025-12-17 00:43:47,296 | INFO     | update_server=False
[2025-12-17 01:44:43] 2025-12-17 00:43:47,296 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 01:44:43] 2025-12-17 00:43:47,296 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 01:44:43] 2025-12-17 00:43:47,296 | INFO     | aborting loop
[2025-12-17 01:44:43] 2025-12-17 00:43:47,296 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 01:44:43] 2025-12-17 00:43:47,296 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 01:44:43] 2025-12-17 00:43:47,639 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 01:44:43] 2025-12-17 00:43:47,682 | INFO     | all payload control threads have been joined
[2025-12-17 01:44:43] 2025-12-17 00:43:47,809 | INFO     | all data control threads have been joined
[2025-12-17 01:44:43] 2025-12-17 00:43:47,912 | INFO     | all job control threads have been joined
[2025-12-17 01:44:43] 2025-12-17 00:43:48,301 | INFO     | [job] queue monitor thread has finished
[2025-12-17 01:44:43] 2025-12-17 00:43:48,301 | INFO     | [job] retrieve thread has finished
[2025-12-17 01:44:43] 2025-12-17 00:43:48,301 | INFO     | [job] job monitor thread has finished
[2025-12-17 01:44:43] 2025-12-17 00:43:48,326 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 01:44:43] 2025-12-17 00:43:48,393 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 01:44:43] 2025-12-17 00:43:48,687 | INFO     | [payload] control thread has finished
[2025-12-17 01:44:43] 2025-12-17 00:43:48,814 | INFO     | [data] control thread has finished
[2025-12-17 01:44:43] 2025-12-17 00:43:48,917 | INFO     | [job] control thread has finished
[2025-12-17 01:44:43] 2025-12-17 00:43:49,234 | INFO     | [payload] validate_post thread has finished
[2025-12-17 01:44:43] 2025-12-17 00:43:49,518 | INFO     | [data] copytool_in thread has finished
[2025-12-17 01:44:43] 2025-12-17 00:43:49,579 | INFO     | [payload] failed_post thread has finished
[2025-12-17 01:44:43] 2025-12-17 00:43:49,643 | INFO     | [data] copytool_out thread has finished
[2025-12-17 01:44:43] 2025-12-17 00:43:49,685 | INFO     | [job] validate thread has finished
[2025-12-17 01:44:43] 2025-12-17 00:43:49,753 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 01:44:43] 2025-12-17 00:43:51,303 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 01:44:43] 2025-12-17 00:43:57,544 | INFO     | job.realtimelogging is not enabled
[2025-12-17 01:44:43] 2025-12-17 00:43:58,550 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 01:44:43] 2025-12-17 00:44:17,640 | INFO     | PID=790948 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-17 01:44:43] 2025-12-17 00:44:17,641 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 01:44:43] 2025-12-17 00:44:17,641 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 01:44:43] 2025-12-17 00:44:17,641 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 01:44:43] 2025-12-17 00:44:38,312 | INFO     | [monitor] cgroup control has ended
[2025-12-17 01:44:43] 2025-12-17 00:44:38,674 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140373735376704)>', '<ExcThread(monitor, started 140373372409600)>']
[2025-12-17 01:44:43] 2025-12-17 00:44:38,752 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 01:44:43] 2025-12-17 00:44:38,753 | INFO     | [monitor] control thread has ended
[2025-12-17 01:44:43] 2025-12-17 00:44:43,692 | INFO     | all workflow threads have been joined
[2025-12-17 01:44:43] 2025-12-17 00:44:43,692 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 01:44:43] 2025-12-17 00:44:43,693 | INFO     | traces error code: 0
[2025-12-17 01:44:43] 2025-12-17 00:44:43,693 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 01:44:43] 2025-12-17 00:44:43,745 [wrapper] ==== pilot stdout END ====
[2025-12-17 01:44:43] 2025-12-17 00:44:43,747 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 01:44:43] 2025-12-17 00:44:43,750 [wrapper] pilotpid: 790948
[2025-12-17 01:44:43] 2025-12-17 00:44:43,753 [wrapper] Pilot exit status: 0
[2025-12-17 01:44:43] 2025-12-17 00:44:43,760 [wrapper] pandaids: 6929465757
[2025-12-17 01:44:43] 2025-12-17 00:44:43,780 [wrapper] cleanup supervisor_pilot  812117 790949
[2025-12-17 01:44:43] 2025-12-17 00:44:43,782 [wrapper] Test setup, not cleaning
[2025-12-17 01:44:43] 2025-12-17 00:44:43,785 [wrapper] apfmon messages muted
[2025-12-17 01:44:43] 2025-12-17 00:44:43,788 [wrapper] ==== wrapper stdout END ====
[2025-12-17 01:44:43] 2025-12-17 00:44:43,790 [wrapper] ==== wrapper stderr END ====
[2025-12-17 01:44:43]  *** Error codes and diagnostics ***
[2025-12-17 01:44:43]     "exeErrorCode": 0,
[2025-12-17 01:44:43]     "exeErrorDiag": "",
[2025-12-17 01:44:43]     "pilotErrorCode": 0,
[2025-12-17 01:44:43]     "pilotErrorDiag": "",
[2025-12-17 01:44:43]  *** Listing of results directory ***
[2025-12-17 01:44:43] total 441876
[2025-12-17 01:44:43] -rw-r--r-- 1 boinc boinc    579449 Dec 14 19:53 pilot3.tar.gz
[2025-12-17 01:44:43] -rwx------ 1 boinc boinc     36322 Dec 14 19:55 runpilot2-wrapper.sh
[2025-12-17 01:44:43] -rw-r--r-- 1 boinc boinc      5112 Dec 14 19:56 queuedata.json
[2025-12-17 01:44:43] -rw-r--r-- 1 boinc boinc       100 Dec 16 23:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 01:44:43] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 23:51 run_atlas
[2025-12-17 01:44:43] -rw-r--r-- 1 boinc boinc       105 Dec 16 23:51 job.xml
[2025-12-17 01:44:43] -rw-r--r-- 2 boinc boinc 222299501 Dec 16 23:51 EVNT.47898761._000526.pool.root.1
[2025-12-17 01:44:43] -rw-r--r-- 2 boinc boinc    592405 Dec 16 23:51 input.tar.gz
[2025-12-17 01:44:43] -rw-r--r-- 2 boinc boinc     15847 Dec 16 23:51 start_atlas.sh
[2025-12-17 01:44:43] drwxrwx--x 2 boinc boinc      4096 Dec 16 23:51 shared
[2025-12-17 01:44:43] -rw-r--r-- 1 boinc boinc         0 Dec 16 23:51 boinc_setup_complete
[2025-12-17 01:44:43] -rw-r--r-- 1 boinc boinc      6449 Dec 16 23:51 init_data.xml
[2025-12-17 01:44:43] -rw-r--r-- 1 boinc boinc         0 Dec 16 23:51 boinc_lockfile
[2025-12-17 01:44:43] -rw-r--r-- 1 boinc boinc      2506 Dec 16 23:51 pandaJob.out
[2025-12-17 01:44:43] -rw------- 1 boinc boinc    987393 Dec 16 23:51 agis_schedconf.cvmfs.json
[2025-12-17 01:44:43] -rw------- 1 boinc boinc   1516240 Dec 16 23:51 agis_ddmendpoints.agis.ALL.json
[2025-12-17 01:44:43] drwx------ 5 boinc boinc      4096 Dec 16 23:51 pilot3
[2025-12-17 01:44:43] -rw------- 1 boinc boinc 223774487 Dec 17 01:43 HITS.47898763._011890.pool.root.1
[2025-12-17 01:44:43] -rw-r--r-- 1 boinc boinc       529 Dec 17 01:43 boinc_task_state.xml
[2025-12-17 01:44:43] -rw------- 1 boinc boinc      1014 Dec 17 01:43 memory_monitor_summary.json
[2025-12-17 01:44:43] -rw------- 1 boinc boinc    279398 Dec 17 01:43 log.47898763._011890.job.log.tgz.1
[2025-12-17 01:44:43] -rw------- 1 boinc boinc      7748 Dec 17 01:43 heartbeat.json
[2025-12-17 01:44:43] -rw------- 1 boinc boinc        95 Dec 17 01:44 pilot_heartbeat.json
[2025-12-17 01:44:43] -rw-r--r-- 1 boinc boinc      8192 Dec 17 01:44 boinc_mmap_file
[2025-12-17 01:44:43] -rw-r--r-- 1 boinc boinc        27 Dec 17 01:44 wrapper_checkpoint.txt
[2025-12-17 01:44:43] -rw------- 1 boinc boinc      4823 Dec 17 01:44 pilotlog.txt
[2025-12-17 01:44:43] -rw------- 1 boinc boinc    974500 Dec 17 01:44 log.47898763._011890.job.log.1
[2025-12-17 01:44:43] -rw------- 1 boinc boinc       357 Dec 17 01:44 output.list
[2025-12-17 01:44:43] -rw-r--r-- 1 boinc boinc       620 Dec 17 01:44 runtime_log
[2025-12-17 01:44:43] -rw------- 1 boinc boinc   1269760 Dec 17 01:44 result.tar.gz
[2025-12-17 01:44:43] -rw-r--r-- 1 boinc boinc      8917 Dec 17 01:44 runtime_log.err
[2025-12-17 01:44:43] -rw------- 1 boinc boinc       663 Dec 17 01:44 AJMODm8Q6o8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmArRKDmDhQPdn.diag
[2025-12-17 01:44:43] -rw-r--r-- 1 boinc boinc     11105 Dec 17 01:44 stderr.txt
[2025-12-17 01:44:43] HITS file was successfully produced:
[2025-12-17 01:44:43] -rw------- 1 boinc boinc 223774487 Dec 17 01:43 shared/HITS.pool.root.1
[2025-12-17 01:44:43]  *** Contents of shared directory: ***
[2025-12-17 01:44:43] total 437468
[2025-12-17 01:44:43] -rw-r--r-- 2 boinc boinc 222299501 Dec 16 23:51 ATLAS.root_0
[2025-12-17 01:44:43] -rw-r--r-- 2 boinc boinc    592405 Dec 16 23:51 input.tar.gz
[2025-12-17 01:44:43] -rw-r--r-- 2 boinc boinc     15847 Dec 16 23:51 start_atlas.sh
[2025-12-17 01:44:43] -rw------- 1 boinc boinc 223774487 Dec 17 01:43 HITS.pool.root.1
[2025-12-17 01:44:43] -rw------- 1 boinc boinc   1269760 Dec 17 01:44 result.tar.gz
01:45:05 (787222): run_atlas exited; CPU time 19419.920458
01:45:05 (787222): called boinc_finish(0)

</stderr_txt>
]]>

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