Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:31:35 (731849): wrapper (7.7.26015): starting
09:31:35 (731849): wrapper: running run_atlas (--nthreads 10)
[2025-12-16 09:31:35] Arguments: --nthreads 10
[2025-12-16 09:31:35] Threads: 10
[2025-12-16 09:31:35] Checking for CVMFS
[2025-12-16 09:31:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 09:31:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 09:31:36] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 09:31:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 09:31:36] 2.13.3.0 16090 58925 295912 154073 2 568 28008653 32935936 30000 16776704 0 775273188 99.568 846685071 50760 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-16 09:31:36] CVMFS is ok
[2025-12-16 09:31:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 09:31:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 09:31:36] Further information can be found at the LHC@home message board.
[2025-12-16 09:31:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 09:31:36] Checking for apptainer binary...
[2025-12-16 09:31:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 09:31:36] Running /usr/bin/apptainer --version
[2025-12-16 09:31:37] apptainer version 1.4.5-2.el9
[2025-12-16 09:31:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 09:31:37] c7-9-15.aglt2.org
[2025-12-16 09:31:37] apptainer works
[2025-12-16 09:31:37] Set ATHENA_PROC_NUMBER=10
[2025-12-16 09:31:37] Set ATHENA_CORE_NUMBER=10
[2025-12-16 09:31:37] Starting ATLAS job with PandaID=6929963129
[2025-12-16 09:31:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 10:45:44]  *** The last 200 lines of the pilot log: ***
[2025-12-16 10:45:44] 2025-12-16 15:44:49,228 | INFO     | job 6929963129 has state=finished
[2025-12-16 10:45:44] 2025-12-16 15:44:49,228 | INFO     | preparing for final server update for job 6929963129 in state='finished'
[2025-12-16 10:45:44] 2025-12-16 15:44:49,229 | INFO     | this job has now completed (state=finished)
[2025-12-16 10:45:44] 2025-12-16 15:44:49,229 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-16 10:45:44] 2025-12-16 15:44:49,229 | INFO     | log transfer has been attempted: DONE
[2025-12-16 10:45:44] 2025-12-16 15:44:49,229 | INFO     | job 6929963129 has finished - writing final server update
[2025-12-16 10:45:44] 2025-12-16 15:44:49,229 | INFO     | total number of processed events: 400 (read)
[2025-12-16 10:45:44] 2025-12-16 15:44:49,232 | INFO     | executing command: lscpu
[2025-12-16 10:45:44] 2025-12-16 15:44:49,333 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-16 10:45:44] 2025-12-16 15:44:51,067 | INFO     | time since job start (4357s) is within the limit (174528.0s)
[2025-12-16 10:45:44] 2025-12-16 15:44:51,130 | INFO     | monitor loop #310: job 0:6929963129 is in state 'finished'
[2025-12-16 10:45:44] 2025-12-16 15:44:51,130 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 10:45:44] 2025-12-16 15:44:53,074 | INFO     | time since job start (4359s) is within the limit (174528.0s)
[2025-12-16 10:45:44] 2025-12-16 15:44:53,636 | INFO     | monitor loop #311: job 0:6929963129 is in state 'finished'
[2025-12-16 10:45:44] 2025-12-16 15:44:53,636 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 10:45:44] 2025-12-16 15:44:55,070 | INFO     | PID=745466 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-16 10:45:44] 2025-12-16 15:44:55,070 | INFO     | .. there are 28 such processes running
[2025-12-16 10:45:44] 2025-12-16 15:44:56,071 | INFO     | time since job start (4362s) is within the limit (174528.0s)
[2025-12-16 10:45:44] 2025-12-16 15:44:56,161 | INFO     | monitor loop #312: job 0:6929963129 is in state 'finished'
[2025-12-16 10:45:44] 2025-12-16 15:44:56,162 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 10:45:44] 2025-12-16 15:44:58,078 | INFO     | time since job start (4364s) is within the limit (174528.0s)
[2025-12-16 10:45:44] 2025-12-16 15:44:58,678 | INFO     | monitor loop #313: job 0:6929963129 is in state 'finished'
[2025-12-16 10:45:44] 2025-12-16 15:44:58,678 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 10:45:44] 2025-12-16 15:45:00,095 | INFO     | time since job start (4366s) is within the limit (174528.0s)
[2025-12-16 10:45:44] 2025-12-16 15:45:01,183 | INFO     | monitor loop #314: job 0:6929963129 is in state 'finished'
[2025-12-16 10:45:44] 2025-12-16 15:45:01,183 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 10:45:44] 2025-12-16 15:45:02,102 | INFO     | time since job start (4368s) is within the limit (174528.0s)
[2025-12-16 10:45:44] 2025-12-16 15:45:03,694 | INFO     | monitor loop #315: job 0:6929963129 is in state 'finished'
[2025-12-16 10:45:44] 2025-12-16 15:45:03,694 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 10:45:44] 2025-12-16 15:45:04,109 | INFO     | time since job start (4370s) is within the limit (174528.0s)
[2025-12-16 10:45:44] 2025-12-16 15:45:06,117 | INFO     | time since job start (4372s) is within the limit (174528.0s)
[2025-12-16 10:45:44] 2025-12-16 15:45:06,199 | INFO     | monitor loop #316: job 0:6929963129 is in state 'finished'
[2025-12-16 10:45:44] 2025-12-16 15:45:06,199 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 10:45:44] 2025-12-16 15:45:08,122 | INFO     | time since job start (4374s) is within the limit (174528.0s)
[2025-12-16 10:45:44] 2025-12-16 15:45:08,704 | INFO     | monitor loop #317: job 0:6929963129 is in state 'finished'
[2025-12-16 10:45:44] 2025-12-16 15:45:08,704 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 10:45:44] 2025-12-16 15:45:09,949 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-16 10:45:44] 2025-12-16 15:45:09,954 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.248703125
[2025-12-16 10:45:44] 2025-12-16 15:45:09,966 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6929963129/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 10:45:44] 2025-12-16 15:45:09,966 | INFO     | extracted standard info from prmon json
[2025-12-16 10:45:44] 2025-12-16 15:45:09,966 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 10:45:44] 2025-12-16 15:45:09,966 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 10:45:44] 2025-12-16 15:45:09,967 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 10:45:44] 2025-12-16 15:45:09,967 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 10:45:44] 2025-12-16 15:45:09,967 | INFO     | fitting pss+swap vs Time
[2025-12-16 10:45:44] 2025-12-16 15:45:09,967 | INFO     | sum of square deviations: 81264993.984375
[2025-12-16 10:45:44] 2025-12-16 15:45:09,968 | INFO     | sum of deviations: -3053089603.265625
[2025-12-16 10:45:44] 2025-12-16 15:45:09,968 | INFO     | mean x: 1765897833.515625
[2025-12-16 10:45:44] 2025-12-16 15:45:09,968 | INFO     | mean y: 2649317.765625
[2025-12-16 10:45:44] 2025-12-16 15:45:09,968 | INFO     | intersect: 66346643842.30187
[2025-12-16 10:45:44] 2025-12-16 15:45:09,968 | INFO     | chi2: 0.005322473776638101
[2025-12-16 10:45:44] 2025-12-16 15:45:09,968 | INFO     | current memory leak: -37.57 B/s (using 64 data points, chi2=0.01)
[2025-12-16 10:45:44] 2025-12-16 15:45:09,968 | INFO     | could have reported an average CPU frequency of 3800 MHz (6 samples)
[2025-12-16 10:45:44] 2025-12-16 15:45:09,968 | INFO     | ..............................
[2025-12-16 10:45:44] 2025-12-16 15:45:09,968 | INFO     | . Timing measurements:
[2025-12-16 10:45:44] 2025-12-16 15:45:09,968 | INFO     | . get job = 0 s
[2025-12-16 10:45:44] 2025-12-16 15:45:09,968 | INFO     | . initial setup = 2 s
[2025-12-16 10:45:44] 2025-12-16 15:45:09,968 | INFO     | . payload setup = 22 s
[2025-12-16 10:45:44] 2025-12-16 15:45:09,968 | INFO     | . stage-in = 0 s
[2025-12-16 10:45:44] 2025-12-16 15:45:09,968 | INFO     | . payload execution = 4288 s
[2025-12-16 10:45:44] 2025-12-16 15:45:09,968 | INFO     | . stage-out = 1 s
[2025-12-16 10:45:44] 2025-12-16 15:45:09,968 | INFO     | . log creation = 0 s
[2025-12-16 10:45:44] 2025-12-16 15:45:09,968 | INFO     | ..............................
[2025-12-16 10:45:44] 2025-12-16 15:45:10,129 | INFO     | time since job start (4376s) is within the limit (174528.0s)
[2025-12-16 10:45:44] 2025-12-16 15:45:10,205 | INFO     | 
[2025-12-16 10:45:44] 2025-12-16 15:45:10,206 | INFO     | job summary report
[2025-12-16 10:45:44] 2025-12-16 15:45:10,206 | INFO     | --------------------------------------------------
[2025-12-16 10:45:44] 2025-12-16 15:45:10,206 | INFO     | PanDA job id: 6929963129
[2025-12-16 10:45:44] 2025-12-16 15:45:10,206 | INFO     | task id: 47898826
[2025-12-16 10:45:44] 2025-12-16 15:45:10,206 | INFO     | errors: (none)
[2025-12-16 10:45:44] 2025-12-16 15:45:10,206 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 10:45:44] 2025-12-16 15:45:10,206 | INFO     | pilot state: finished 
[2025-12-16 10:45:44] 2025-12-16 15:45:10,206 | INFO     | transexitcode: 0
[2025-12-16 10:45:44] 2025-12-16 15:45:10,206 | INFO     | exeerrorcode: 0
[2025-12-16 10:45:44] 2025-12-16 15:45:10,206 | INFO     | exeerrordiag: 
[2025-12-16 10:45:44] 2025-12-16 15:45:10,206 | INFO     | exitcode: 0
[2025-12-16 10:45:44] 2025-12-16 15:45:10,206 | INFO     | exitmsg: OK
[2025-12-16 10:45:44] 2025-12-16 15:45:10,206 | INFO     | cpuconsumptiontime: 32183 s
[2025-12-16 10:45:44] 2025-12-16 15:45:10,206 | INFO     | nevents: 400
[2025-12-16 10:45:44] 2025-12-16 15:45:10,206 | INFO     | neventsw: 0
[2025-12-16 10:45:44] 2025-12-16 15:45:10,206 | INFO     | pid: 756076
[2025-12-16 10:45:44] 2025-12-16 15:45:10,206 | INFO     | pgrp: 756076
[2025-12-16 10:45:44] 2025-12-16 15:45:10,206 | INFO     | corecount: 10
[2025-12-16 10:45:44] 2025-12-16 15:45:10,206 | INFO     | event service: False
[2025-12-16 10:45:44] 2025-12-16 15:45:10,206 | INFO     | sizes: {0: 2283792, 1: 2283991, 11: 2283991, 16: 2284281, 22: 2284309, 4314: 2310588, 4317: 2319586, 4319: 2319642, 4341: 2319836}
[2025-12-16 10:45:44] 2025-12-16 15:45:10,206 | INFO     | --------------------------------------------------
[2025-12-16 10:45:44] 2025-12-16 15:45:10,206 | INFO     | 
[2025-12-16 10:45:44] 2025-12-16 15:45:10,207 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-12-16 10:45:44] 2025-12-16 15:45:10,246 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 10:45:44] 2025-12-16 15:45:10,246 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 10:45:44] 2025-12-16 15:45:10,246 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 10:45:44] 2025-12-16 15:45:10,246 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 10:45:44] 2025-12-16 15:45:10,246 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 10:45:44] 2025-12-16 15:45:10,246 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 10:45:44] 2025-12-16 15:45:10,246 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 10:45:44] 2025-12-16 15:45:10,247 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 10:45:44] 2025-12-16 15:45:10,247 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 10:45:44] 2025-12-16 15:45:10,247 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 10:45:44] 2025-12-16 15:45:10,247 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 10:45:44] 2025-12-16 15:45:10,247 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 10:45:44] 2025-12-16 15:45:10,247 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 10:45:44] 2025-12-16 15:45:10,247 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 10:45:44] 2025-12-16 15:45:10,247 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 10:45:44] 2025-12-16 15:45:10,247 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 10:45:44] 2025-12-16 15:45:10,247 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 10:45:44] 2025-12-16 15:45:10,247 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 10:45:44] 2025-12-16 15:45:10,247 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 10:45:44] 2025-12-16 15:45:10,247 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 10:45:44] 2025-12-16 15:45:10,247 | INFO     | job 6929963129 has completed (purged errors)
[2025-12-16 10:45:44] 2025-12-16 15:45:10,247 | INFO     | overall cleanup function is called
[2025-12-16 10:45:44] 2025-12-16 15:45:11,255 | INFO     | --- collectZombieJob: --- 10, [756076]
[2025-12-16 10:45:44] 2025-12-16 15:45:11,255 | INFO     | zombie collector waiting for pid 756076
[2025-12-16 10:45:44] 2025-12-16 15:45:11,255 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 10:45:44] 2025-12-16 15:45:11,255 | INFO     | collected zombie processes
[2025-12-16 10:45:44] 2025-12-16 15:45:11,255 | INFO     | will attempt to kill all subprocesses of pid=756076
[2025-12-16 10:45:44] 2025-12-16 15:45:11,784 | INFO     | process IDs to be killed: [756076] (in reverse order)
[2025-12-16 10:45:44] 2025-12-16 15:45:12,111 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 10:45:44] 2025-12-16 15:45:12,112 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 10:45:44] 2025-12-16 15:45:12,129 | INFO     | did not find any defunct processes belonging to 756076
[2025-12-16 10:45:44] 2025-12-16 15:45:12,158 | INFO     | did not find any defunct processes belonging to 756076
[2025-12-16 10:45:44] 2025-12-16 15:45:12,159 | INFO     | ready for new job
[2025-12-16 10:45:44] 2025-12-16 15:45:12,159 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 10:45:44] 2025-12-16 15:45:12,160 | INFO     | ***************************************
[2025-12-16 10:45:44] 2025-12-16 15:45:12,160 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 10:45:44] 2025-12-16 15:45:12,160 | INFO     | ***************************************
[2025-12-16 10:45:44] 2025-12-16 15:45:12,160 | INFO     | 
[2025-12-16 10:45:44] 2025-12-16 15:45:12,164 | INFO     | architecture information:
[2025-12-16 10:45:44] 2025-12-16 15:45:12,165 | INFO     | executing command: cat /etc/os-release
[2025-12-16 10:45:44] 2025-12-16 15:45:12,192 | INFO     | cat /etc/os-release:
[2025-12-16 10:45:44] NAME="CentOS Linux"
[2025-12-16 10:45:44] VERSION="7 (Core)"
[2025-12-16 10:45:44] ID="centos"
[2025-12-16 10:45:44] ID_LIKE="rhel fedora"
[2025-12-16 10:45:44] VERSION_ID="7"
[2025-12-16 10:45:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 10:45:44] ANSI_COLOR="0;31"
[2025-12-16 10:45:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 10:45:44] HOME_URL="https://www.centos.org/"
[2025-12-16 10:45:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 10:45:44] 
[2025-12-16 10:45:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 10:45:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 10:45:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 10:45:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 10:45:44] 
[2025-12-16 10:45:44] 2025-12-16 15:45:12,192 | INFO     | ***************************************
[2025-12-16 10:45:44] 2025-12-16 15:45:12,695 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-12-16 10:45:44] 2025-12-16 15:45:12,772 | INFO     | sufficient remaining disk space (73920413696 B)
[2025-12-16 10:45:44] 2025-12-16 15:45:12,772 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 10:45:44] 2025-12-16 15:45:12,773 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 10:45:44] 2025-12-16 15:45:12,773 | INFO     | update_server=False
[2025-12-16 10:45:44] 2025-12-16 15:45:12,773 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 10:45:44] 2025-12-16 15:45:12,773 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 10:45:44] 2025-12-16 15:45:12,773 | INFO     | aborting loop
[2025-12-16 10:45:44] 2025-12-16 15:45:12,776 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 10:45:44] 2025-12-16 15:45:13,245 | INFO     | all job control threads have been joined
[2025-12-16 10:45:44] 2025-12-16 15:45:13,342 | INFO     | all payload control threads have been joined
[2025-12-16 10:45:44] 2025-12-16 15:45:13,773 | INFO     | [job] retrieve thread has finished
[2025-12-16 10:45:44] 2025-12-16 15:45:13,782 | INFO     | [job] job monitor thread has finished
[2025-12-16 10:45:44] 2025-12-16 15:45:13,813 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 10:45:44] 2025-12-16 15:45:13,839 | INFO     | all data control threads have been joined
[2025-12-16 10:45:44] 2025-12-16 15:45:13,979 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 10:45:44] 2025-12-16 15:45:14,034 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 10:45:44] 2025-12-16 15:45:14,251 | INFO     | [job] control thread has finished
[2025-12-16 10:45:44] 2025-12-16 15:45:14,266 | INFO     | [job] validate thread has finished
[2025-12-16 10:45:44] 2025-12-16 15:45:14,347 | INFO     | [payload] control thread has finished
[2025-12-16 10:45:44] 2025-12-16 15:45:14,399 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 10:45:44] 2025-12-16 15:45:14,653 | INFO     | [payload] failed_post thread has finished
[2025-12-16 10:45:44] 2025-12-16 15:45:14,748 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 10:45:44] 2025-12-16 15:45:14,763 | INFO     | [data] copytool_in thread has finished
[2025-12-16 10:45:44] 2025-12-16 15:45:14,845 | INFO     | [data] control thread has finished
[2025-12-16 10:45:44] 2025-12-16 15:45:15,039 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 10:45:44] 2025-12-16 15:45:15,054 | INFO     | [payload] validate_post thread has finished
[2025-12-16 10:45:44] 2025-12-16 15:45:15,985 | INFO     | [data] copytool_out thread has finished
[2025-12-16 10:45:44] 2025-12-16 15:45:16,045 | INFO     | [job] queue monitor thread has finished
[2025-12-16 10:45:44] 2025-12-16 15:45:16,787 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 10:45:44] 2025-12-16 15:45:20,908 | INFO     | [monitor] cgroup control has ended
[2025-12-16 10:45:44] 2025-12-16 15:45:22,360 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140204405409600)>', '<ExcThread(monitor, started 140203620554496)>']
[2025-12-16 10:45:44] 2025-12-16 15:45:27,386 | INFO     | all workflow threads have been joined
[2025-12-16 10:45:44] 2025-12-16 15:45:27,388 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 10:45:44] 2025-12-16 15:45:27,389 | INFO     | traces error code: 0
[2025-12-16 10:45:44] 2025-12-16 15:45:27,389 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 10:45:44] 2025-12-16 15:45:43,778 | INFO     | PID=745466 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-16 10:45:44] 2025-12-16 15:45:43,778 | INFO     | .. there are 28 such processes running
[2025-12-16 10:45:44] 2025-12-16 15:45:43,779 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 10:45:44] 2025-12-16 15:45:43,779 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 10:45:44] 2025-12-16 15:45:43,779 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 10:45:44] 2025-12-16 15:45:43,779 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 10:45:44] 2025-12-16 15:45:43,779 | CRITICAL | thread 'MainThread' is not alive
[2025-12-16 10:45:44] 2025-12-16 15:45:43,779 | INFO     | [monitor] control thread has ended
[2025-12-16 10:45:44] 2025-12-16 15:45:43,930 [wrapper] ==== pilot stdout END ====
[2025-12-16 10:45:44] 2025-12-16 15:45:43,958 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 10:45:44] 2025-12-16 15:45:43,961 [wrapper] pilotpid: 745466
[2025-12-16 10:45:44] 2025-12-16 15:45:43,967 [wrapper] Pilot exit status: 0
[2025-12-16 10:45:44] 2025-12-16 15:45:44,012 [wrapper] pandaids: 6929963129
[2025-12-16 10:45:44] 2025-12-16 15:45:44,347 [wrapper] cleanup supervisor_pilot 1100494 745467
[2025-12-16 10:45:44] 2025-12-16 15:45:44,353 [wrapper] Test setup, not cleaning
[2025-12-16 10:45:44] 2025-12-16 15:45:44,388 [wrapper] apfmon messages muted
[2025-12-16 10:45:44] 2025-12-16 15:45:44,402 [wrapper] ==== wrapper stdout END ====
[2025-12-16 10:45:44] 2025-12-16 15:45:44,424 [wrapper] ==== wrapper stderr END ====
[2025-12-16 10:45:44]  *** Error codes and diagnostics ***
[2025-12-16 10:45:44]     "exeErrorCode": 0,
[2025-12-16 10:45:44]     "exeErrorDiag": "",
[2025-12-16 10:45:44]     "pilotErrorCode": 0,
[2025-12-16 10:45:44]     "pilotErrorDiag": "",
[2025-12-16 10:45:44]  *** Listing of results directory ***
[2025-12-16 10:45:44] total 439792
[2025-12-16 10:45:44] -rw-r--r--. 1 boincer umatlas    579449 Dec 15 15:57 pilot3.tar.gz
[2025-12-16 10:45:44] -rwx------. 1 boincer umatlas     36322 Dec 15 15:58 runpilot2-wrapper.sh
[2025-12-16 10:45:44] -rw-r--r--. 1 boincer umatlas      5112 Dec 15 15:59 queuedata.json
[2025-12-16 10:45:44] -rw-r--r--. 1 boincer umatlas       100 Dec 16 09:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 10:45:44] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 16 09:31 run_atlas
[2025-12-16 10:45:44] -rw-r--r--. 1 boincer umatlas       105 Dec 16 09:31 job.xml
[2025-12-16 10:45:44] -rw-r--r--. 2 boincer umatlas 222285340 Dec 16 09:31 EVNT.47898824._000186.pool.root.1
[2025-12-16 10:45:44] -rw-r--r--. 2 boincer umatlas     15847 Dec 16 09:31 start_atlas.sh
[2025-12-16 10:45:44] drwxrwx--x. 2 boincer umatlas      4096 Dec 16 09:31 shared
[2025-12-16 10:45:44] -rw-r--r--. 2 boincer umatlas    592392 Dec 16 09:31 input.tar.gz
[2025-12-16 10:45:44] -rw-r--r--. 1 boincer umatlas         0 Dec 16 09:31 boinc_lockfile
[2025-12-16 10:45:44] -rw-r--r--. 1 boincer umatlas      2515 Dec 16 09:31 pandaJob.out
[2025-12-16 10:45:44] -rw-------. 1 boincer umatlas        57 Dec 16 09:31 setup.sh.local
[2025-12-16 10:45:44] -rw-------. 1 boincer umatlas    987355 Dec 16 09:32 agis_schedconf.cvmfs.json
[2025-12-16 10:45:44] -rw-------. 1 boincer umatlas   1516240 Dec 16 09:32 agis_ddmendpoints.agis.ALL.json
[2025-12-16 10:45:44] drwx------. 5 boincer umatlas      4096 Dec 16 09:32 pilot3
[2025-12-16 10:45:44] -rw-r--r--. 1 boincer umatlas      7171 Dec 16 10:37 init_data.xml
[2025-12-16 10:45:44] -rw-------. 1 boincer umatlas 222156342 Dec 16 10:44 HITS.47898826._003191.pool.root.1
[2025-12-16 10:45:44] -rw-r--r--. 1 boincer umatlas       530 Dec 16 10:44 boinc_task_state.xml
[2025-12-16 10:45:44] -rw-------. 1 boincer umatlas      1033 Dec 16 10:44 memory_monitor_summary.json
[2025-12-16 10:45:44] -rw-------. 1 boincer umatlas    356974 Dec 16 10:44 log.47898826._003191.job.log.tgz.1
[2025-12-16 10:45:44] -rw-------. 1 boincer umatlas      7775 Dec 16 10:45 heartbeat.json
[2025-12-16 10:45:44] -rw-r--r--. 1 boincer umatlas        27 Dec 16 10:45 wrapper_checkpoint.txt
[2025-12-16 10:45:44] -rw-------. 1 boincer umatlas        95 Dec 16 10:45 pilot_heartbeat.json
[2025-12-16 10:45:44] -rw-------. 1 boincer umatlas       892 Dec 16 10:45 pilotlog.txt
[2025-12-16 10:45:44] -rw-------. 1 boincer umatlas    637616 Dec 16 10:45 log.47898826._003191.job.log.1
[2025-12-16 10:45:44] -rw-r--r--. 1 boincer umatlas      8192 Dec 16 10:45 boinc_mmap_file
[2025-12-16 10:45:44] -rw-------. 1 boincer umatlas       357 Dec 16 10:45 output.list
[2025-12-16 10:45:44] -rw-r--r--. 1 boincer umatlas       620 Dec 16 10:45 runtime_log
[2025-12-16 10:45:44] -rw-------. 1 boincer umatlas   1013760 Dec 16 10:45 result.tar.gz
[2025-12-16 10:45:44] -rw-r--r--. 1 boincer umatlas      9339 Dec 16 10:45 runtime_log.err
[2025-12-16 10:45:44] -rw-------. 1 boincer umatlas       651 Dec 16 10:45 KJlNDm3oUp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmojYKDmHR211n.diag
[2025-12-16 10:45:44] -rw-r--r--. 1 boincer umatlas     22321 Dec 16 10:45 stderr.txt
[2025-12-16 10:45:44] HITS file was successfully produced:
[2025-12-16 10:45:44] -rw-------. 1 boincer umatlas 222156342 Dec 16 10:44 shared/HITS.pool.root.1
[2025-12-16 10:45:44]  *** Contents of shared directory: ***
[2025-12-16 10:45:44] total 435624
[2025-12-16 10:45:44] -rw-r--r--. 2 boincer umatlas 222285340 Dec 16 09:31 ATLAS.root_0
[2025-12-16 10:45:44] -rw-r--r--. 2 boincer umatlas     15847 Dec 16 09:31 start_atlas.sh
[2025-12-16 10:45:44] -rw-r--r--. 2 boincer umatlas    592392 Dec 16 09:31 input.tar.gz
[2025-12-16 10:45:44] -rw-------. 1 boincer umatlas 222156342 Dec 16 10:44 HITS.pool.root.1
[2025-12-16 10:45:44] -rw-------. 1 boincer umatlas   1013760 Dec 16 10:45 result.tar.gz
10:45:46 (731849): run_atlas exited; CPU time 32262.564785
10:45:46 (731849): called boinc_finish(0)

</stderr_txt>
]]>

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