Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:21:01 (2407112): wrapper (7.7.26015): starting
09:21:01 (2407112): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 09:21:01] Arguments: --nthreads 8
[2025-12-16 09:21:01] Threads: 8
[2025-12-16 09:21:01] Checking for CVMFS
[2025-12-16 09:21:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 09:21:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 09:21:02] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 09:21:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 09:21:02] 2.13.2.0 2681929 8202 82748 154073 1 57 24045631 39288832 3664 16776704 0 16511977 99.997 240072 38758 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-16 09:21:02] CVMFS is ok
[2025-12-16 09:21:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 09:21:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 09:21:02] Further information can be found at the LHC@home message board.
[2025-12-16 09:21:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 09:21:02] Checking for apptainer binary...
[2025-12-16 09:21:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 09:21:02] Running /usr/bin/apptainer --version
[2025-12-16 09:21:02] apptainer version 1.4.4-1.el9
[2025-12-16 09:21:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 09:21:02] c-210-16.aglt2.org
[2025-12-16 09:21:02] apptainer works
[2025-12-16 09:21:02] Set ATHENA_PROC_NUMBER=8
[2025-12-16 09:21:02] Set ATHENA_CORE_NUMBER=8
[2025-12-16 09:21:02] Starting ATLAS job with PandaID=6929806987
[2025-12-16 09:21:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 11:11:46]  *** The last 200 lines of the pilot log: ***
[2025-12-16 11:11:46] 2025-12-16 16:11:09,811 | INFO     | log transfer has been attempted: DONE
[2025-12-16 11:11:46] 2025-12-16 16:11:09,811 | INFO     | job 6929806987 has finished - writing final server update
[2025-12-16 11:11:46] 2025-12-16 16:11:09,811 | INFO     | total number of processed events: 400 (read)
[2025-12-16 11:11:46] 2025-12-16 16:11:09,812 | INFO     | executing command: lscpu
[2025-12-16 11:11:46] 2025-12-16 16:11:09,850 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-16 11:11:46] 2025-12-16 16:11:11,317 | INFO     | time since job start (6598s) is within the limit (174528.0s)
[2025-12-16 11:11:46] 2025-12-16 16:11:11,684 | INFO     | monitor loop #489: job 0:6929806987 is in state 'finished'
[2025-12-16 11:11:46] 2025-12-16 16:11:11,684 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 11:11:46] 2025-12-16 16:11:13,323 | INFO     | time since job start (6600s) is within the limit (174528.0s)
[2025-12-16 11:11:46] 2025-12-16 16:11:13,370 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-16 11:11:46] 2025-12-16 16:11:13,377 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2660.1738749999995
[2025-12-16 11:11:46] 2025-12-16 16:11:13,384 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6929806987/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 11:11:46] 2025-12-16 16:11:13,385 | INFO     | extracted standard info from prmon json
[2025-12-16 11:11:46] 2025-12-16 16:11:13,385 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 11:11:46] 2025-12-16 16:11:13,385 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 11:11:46] 2025-12-16 16:11:13,385 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 11:11:46] 2025-12-16 16:11:13,385 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 11:11:46] 2025-12-16 16:11:13,388 | INFO     | fitting pss+swap vs Time
[2025-12-16 11:11:46] 2025-12-16 16:11:13,389 | INFO     | sum of square deviations: 390582207.0
[2025-12-16 11:11:46] 2025-12-16 16:11:13,389 | INFO     | sum of deviations: -2972338459.9999976
[2025-12-16 11:11:46] 2025-12-16 16:11:13,389 | INFO     | mean x: 1765898160.5
[2025-12-16 11:11:46] 2025-12-16 16:11:13,389 | INFO     | mean y: 2550383.314814815
[2025-12-16 11:11:46] 2025-12-16 16:11:13,390 | INFO     | intersect: 13441070942.694519
[2025-12-16 11:11:46] 2025-12-16 16:11:13,390 | INFO     | chi2: 1.4174718550355139
[2025-12-16 11:11:46] 2025-12-16 16:11:13,390 | INFO     | sum of square deviations: 338804492.0
[2025-12-16 11:11:46] 2025-12-16 16:11:13,391 | INFO     | sum of deviations: -2349154408.000001
[2025-12-16 11:11:46] 2025-12-16 16:11:13,391 | INFO     | mean x: 1765898008.0
[2025-12-16 11:11:46] 2025-12-16 16:11:13,391 | INFO     | mean y: 2552222.3203883497
[2025-12-16 11:11:46] 2025-12-16 16:11:13,391 | INFO     | intersect: 12246684716.20604
[2025-12-16 11:11:46] 2025-12-16 16:11:13,391 | INFO     | chi2: 1.4187448531728204
[2025-12-16 11:11:46] 2025-12-16 16:11:13,392 | INFO     | current chi2=1.4187448531728204 (change=-0.08980764822837561 %)
[2025-12-16 11:11:46] 2025-12-16 16:11:13,392 | INFO     | right removable region: 102
[2025-12-16 11:11:46] 2025-12-16 16:11:13,392 | INFO     | sum of square deviations: 338804492.0
[2025-12-16 11:11:46] 2025-12-16 16:11:13,392 | INFO     | sum of deviations: -17074420512.999998
[2025-12-16 11:11:46] 2025-12-16 16:11:13,393 | INFO     | mean x: 1765898313.0
[2025-12-16 11:11:46] 2025-12-16 16:11:13,393 | INFO     | mean y: 2590881.6019417476
[2025-12-16 11:11:46] 2025-12-16 16:11:13,393 | INFO     | intersect: 88996955157.50208
[2025-12-16 11:11:46] 2025-12-16 16:11:13,393 | INFO     | chi2: 0.09129300202838318
[2025-12-16 11:11:46] 2025-12-16 16:11:13,393 | INFO     | current chi2=0.09129300202838318 (change=93.55944869705397 %)
[2025-12-16 11:11:46] 2025-12-16 16:11:13,394 | INFO     | sum of square deviations: 291817564.5
[2025-12-16 11:11:46] 2025-12-16 16:11:13,394 | INFO     | sum of deviations: -14865926584.5
[2025-12-16 11:11:46] 2025-12-16 16:11:13,394 | INFO     | mean x: 1765898465.5
[2025-12-16 11:11:46] 2025-12-16 16:11:13,394 | INFO     | mean y: 2583527.5
[2025-12-16 11:11:46] 2025-12-16 16:11:13,394 | INFO     | intersect: 89961928465.43709
[2025-12-16 11:11:46] 2025-12-16 16:11:13,395 | INFO     | chi2: 0.07663315696402016
[2025-12-16 11:11:46] 2025-12-16 16:11:13,395 | INFO     | current chi2=0.07663315696402016 (change=16.05801621005435 %)
[2025-12-16 11:11:46] 2025-12-16 16:11:13,395 | INFO     | left removable region: 20
[2025-12-16 11:11:46] 2025-12-16 16:11:13,395 | INFO     | sum of square deviations: 170944600.5
[2025-12-16 11:11:46] 2025-12-16 16:11:13,396 | INFO     | sum of deviations: -5420170860.000003
[2025-12-16 11:11:46] 2025-12-16 16:11:13,396 | INFO     | mean x: 1765898587.5
[2025-12-16 11:11:46] 2025-12-16 16:11:13,396 | INFO     | mean y: 2552529.975609756
[2025-12-16 11:11:46] 2025-12-16 16:11:13,396 | INFO     | intersect: 55994213206.515465
[2025-12-16 11:11:46] 2025-12-16 16:11:13,396 | INFO     | chi2: 0.019488971386741924
[2025-12-16 11:11:46] 2025-12-16 16:11:13,396 | INFO     | current memory leak: -31.71 B/s (using 82 data points, chi2=0.02)
[2025-12-16 11:11:46] 2025-12-16 16:11:13,397 | INFO     | could have reported an average CPU frequency of 2617 MHz (7 samples)
[2025-12-16 11:11:46] 2025-12-16 16:11:13,397 | INFO     | ..............................
[2025-12-16 11:11:46] 2025-12-16 16:11:13,397 | INFO     | . Timing measurements:
[2025-12-16 11:11:46] 2025-12-16 16:11:13,397 | INFO     | . get job = 0 s
[2025-12-16 11:11:46] 2025-12-16 16:11:13,397 | INFO     | . initial setup = 2 s
[2025-12-16 11:11:46] 2025-12-16 16:11:13,397 | INFO     | . payload setup = 5 s
[2025-12-16 11:11:46] 2025-12-16 16:11:13,398 | INFO     | . stage-in = 0 s
[2025-12-16 11:11:46] 2025-12-16 16:11:13,398 | INFO     | . payload execution = 6571 s
[2025-12-16 11:11:46] 2025-12-16 16:11:13,398 | INFO     | . stage-out = 1 s
[2025-12-16 11:11:46] 2025-12-16 16:11:13,398 | INFO     | . log creation = 0 s
[2025-12-16 11:11:46] 2025-12-16 16:11:13,398 | INFO     | ..............................
[2025-12-16 11:11:46] 2025-12-16 16:11:13,503 | INFO     | 
[2025-12-16 11:11:46] 2025-12-16 16:11:13,503 | INFO     | job summary report
[2025-12-16 11:11:46] 2025-12-16 16:11:13,503 | INFO     | --------------------------------------------------
[2025-12-16 11:11:46] 2025-12-16 16:11:13,503 | INFO     | PanDA job id: 6929806987
[2025-12-16 11:11:46] 2025-12-16 16:11:13,503 | INFO     | task id: 47886933
[2025-12-16 11:11:46] 2025-12-16 16:11:13,503 | INFO     | errors: (none)
[2025-12-16 11:11:46] 2025-12-16 16:11:13,503 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 11:11:46] 2025-12-16 16:11:13,504 | INFO     | pilot state: finished 
[2025-12-16 11:11:46] 2025-12-16 16:11:13,504 | INFO     | transexitcode: 0
[2025-12-16 11:11:46] 2025-12-16 16:11:13,504 | INFO     | exeerrorcode: 0
[2025-12-16 11:11:46] 2025-12-16 16:11:13,504 | INFO     | exeerrordiag: 
[2025-12-16 11:11:46] 2025-12-16 16:11:13,504 | INFO     | exitcode: 0
[2025-12-16 11:11:46] 2025-12-16 16:11:13,504 | INFO     | exitmsg: OK
[2025-12-16 11:11:46] 2025-12-16 16:11:13,504 | INFO     | cpuconsumptiontime: 47715 s
[2025-12-16 11:11:46] 2025-12-16 16:11:13,504 | INFO     | nevents: 400
[2025-12-16 11:11:46] 2025-12-16 16:11:13,504 | INFO     | neventsw: 0
[2025-12-16 11:11:46] 2025-12-16 16:11:13,504 | INFO     | pid: 2417117
[2025-12-16 11:11:46] 2025-12-16 16:11:13,505 | INFO     | pgrp: 2417117
[2025-12-16 11:11:46] 2025-12-16 16:11:13,505 | INFO     | corecount: 8
[2025-12-16 11:11:46] 2025-12-16 16:11:13,505 | INFO     | event service: False
[2025-12-16 11:11:46] 2025-12-16 16:11:13,505 | INFO     | sizes: {0: 2283965, 1: 2283965, 4: 2284255, 11: 2284283, 6580: 2311413, 6581: 2320595, 6585: 2320733}
[2025-12-16 11:11:46] 2025-12-16 16:11:13,505 | INFO     | --------------------------------------------------
[2025-12-16 11:11:46] 2025-12-16 16:11:13,505 | INFO     | 
[2025-12-16 11:11:46] 2025-12-16 16:11:13,505 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-12-16 11:11:46] 2025-12-16 16:11:13,524 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 11:11:46] 2025-12-16 16:11:13,524 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 11:11:46] 2025-12-16 16:11:13,524 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 11:11:46] 2025-12-16 16:11:13,524 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 11:11:46] 2025-12-16 16:11:13,525 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 11:11:46] 2025-12-16 16:11:13,525 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 11:11:46] 2025-12-16 16:11:13,525 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 11:11:46] 2025-12-16 16:11:13,525 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 11:11:46] 2025-12-16 16:11:13,525 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 11:11:46] 2025-12-16 16:11:13,525 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 11:11:46] 2025-12-16 16:11:13,525 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 11:11:46] 2025-12-16 16:11:13,525 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 11:11:46] 2025-12-16 16:11:13,525 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 11:11:46] 2025-12-16 16:11:13,526 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 11:11:46] 2025-12-16 16:11:13,526 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 11:11:46] 2025-12-16 16:11:13,526 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 11:11:46] 2025-12-16 16:11:13,526 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 11:11:46] 2025-12-16 16:11:13,526 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 11:11:46] 2025-12-16 16:11:13,526 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 11:11:46] 2025-12-16 16:11:13,526 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 11:11:46] 2025-12-16 16:11:13,526 | INFO     | job 6929806987 has completed (purged errors)
[2025-12-16 11:11:46] 2025-12-16 16:11:13,527 | INFO     | overall cleanup function is called
[2025-12-16 11:11:46] 2025-12-16 16:11:14,535 | INFO     | --- collectZombieJob: --- 10, [2417117]
[2025-12-16 11:11:46] 2025-12-16 16:11:14,535 | INFO     | zombie collector waiting for pid 2417117
[2025-12-16 11:11:46] 2025-12-16 16:11:14,535 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 11:11:46] 2025-12-16 16:11:14,535 | INFO     | collected zombie processes
[2025-12-16 11:11:46] 2025-12-16 16:11:14,536 | INFO     | will attempt to kill all subprocesses of pid=2417117
[2025-12-16 11:11:46] 2025-12-16 16:11:14,769 | INFO     | process IDs to be killed: [2417117] (in reverse order)
[2025-12-16 11:11:46] 2025-12-16 16:11:14,834 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 11:11:46] 2025-12-16 16:11:14,835 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 11:11:46] 2025-12-16 16:11:14,841 | INFO     | did not find any defunct processes belonging to 2417117
[2025-12-16 11:11:46] 2025-12-16 16:11:14,848 | INFO     | did not find any defunct processes belonging to 2417117
[2025-12-16 11:11:46] 2025-12-16 16:11:14,848 | INFO     | ready for new job
[2025-12-16 11:11:46] 2025-12-16 16:11:14,848 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 11:11:46] 2025-12-16 16:11:14,850 | INFO     | ***************************************
[2025-12-16 11:11:46] 2025-12-16 16:11:14,850 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 11:11:46] 2025-12-16 16:11:14,850 | INFO     | ***************************************
[2025-12-16 11:11:46] 2025-12-16 16:11:14,851 | INFO     | 
[2025-12-16 11:11:46] 2025-12-16 16:11:14,852 | INFO     | architecture information:
[2025-12-16 11:11:46] 2025-12-16 16:11:14,853 | INFO     | executing command: cat /etc/os-release
[2025-12-16 11:11:46] 2025-12-16 16:11:14,867 | INFO     | cat /etc/os-release:
[2025-12-16 11:11:46] NAME="CentOS Linux"
[2025-12-16 11:11:46] VERSION="7 (Core)"
[2025-12-16 11:11:46] ID="centos"
[2025-12-16 11:11:46] ID_LIKE="rhel fedora"
[2025-12-16 11:11:46] VERSION_ID="7"
[2025-12-16 11:11:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 11:11:46] ANSI_COLOR="0;31"
[2025-12-16 11:11:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 11:11:46] HOME_URL="https://www.centos.org/"
[2025-12-16 11:11:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 11:11:46] 
[2025-12-16 11:11:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 11:11:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 11:11:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 11:11:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 11:11:46] 
[2025-12-16 11:11:46] 2025-12-16 16:11:14,868 | INFO     | ***************************************
[2025-12-16 11:11:46] 2025-12-16 16:11:15,370 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-12-16 11:11:46] 2025-12-16 16:11:15,385 | INFO     | sufficient remaining disk space (52029292544 B)
[2025-12-16 11:11:46] 2025-12-16 16:11:15,385 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 11:11:46] 2025-12-16 16:11:15,385 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 11:11:46] 2025-12-16 16:11:15,385 | INFO     | update_server=False
[2025-12-16 11:11:46] 2025-12-16 16:11:15,386 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 11:11:46] 2025-12-16 16:11:15,386 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 11:11:46] 2025-12-16 16:11:15,386 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 11:11:46] 2025-12-16 16:11:15,386 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 11:11:46] 2025-12-16 16:11:15,386 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 11:11:46] 2025-12-16 16:11:15,387 | INFO     | aborting loop
[2025-12-16 11:11:46] 2025-12-16 16:11:15,569 | INFO     | all job control threads have been joined
[2025-12-16 11:11:46] 2025-12-16 16:11:15,953 | INFO     | all data control threads have been joined
[2025-12-16 11:11:46] 2025-12-16 16:11:16,391 | INFO     | [job] retrieve thread has finished
[2025-12-16 11:11:46] 2025-12-16 16:11:16,392 | INFO     | [job] job monitor thread has finished
[2025-12-16 11:11:46] 2025-12-16 16:11:16,392 | INFO     | [job] queue monitor thread has finished
[2025-12-16 11:11:46] 2025-12-16 16:11:16,531 | INFO     | [job] validate thread has finished
[2025-12-16 11:11:46] 2025-12-16 16:11:16,575 | INFO     | [job] control thread has finished
[2025-12-16 11:11:46] 2025-12-16 16:11:16,657 | INFO     | all payload control threads have been joined
[2025-12-16 11:11:46] 2025-12-16 16:11:16,926 | INFO     | [payload] validate_post thread has finished
[2025-12-16 11:11:46] 2025-12-16 16:11:16,958 | INFO     | [data] control thread has finished
[2025-12-16 11:11:46] 2025-12-16 16:11:17,035 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 11:11:46] 2025-12-16 16:11:17,048 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 11:11:46] 2025-12-16 16:11:17,155 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 11:11:46] 2025-12-16 16:11:17,240 | INFO     | [payload] failed_post thread has finished
[2025-12-16 11:11:46] 2025-12-16 16:11:17,392 | INFO     | [data] copytool_out thread has finished
[2025-12-16 11:11:46] 2025-12-16 16:11:17,663 | INFO     | [payload] control thread has finished
[2025-12-16 11:11:46] 2025-12-16 16:11:17,781 | INFO     | [data] copytool_in thread has finished
[2025-12-16 11:11:46] 2025-12-16 16:11:17,814 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 11:11:46] 2025-12-16 16:11:19,392 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 11:11:46] 2025-12-16 16:11:23,179 | INFO     | [monitor] cgroup control has ended
[2025-12-16 11:11:46] 2025-12-16 16:11:23,279 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140299377211200)>', '<ExcThread(monitor, started 140299024180992)>']
[2025-12-16 11:11:46] 2025-12-16 16:11:28,304 | INFO     | all workflow threads have been joined
[2025-12-16 11:11:46] 2025-12-16 16:11:28,304 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 11:11:46] 2025-12-16 16:11:28,305 | INFO     | traces error code: 0
[2025-12-16 11:11:46] 2025-12-16 16:11:28,305 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 11:11:46] 2025-12-16 16:11:46,669 | INFO     | PID=2410783 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 11:11:46] 2025-12-16 16:11:46,670 | INFO     | .. there are 5 such processes running
[2025-12-16 11:11:46] 2025-12-16 16:11:46,671 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 11:11:46] 2025-12-16 16:11:46,671 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 11:11:46] 2025-12-16 16:11:46,672 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 11:11:46] 2025-12-16 16:11:46,672 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 11:11:46] 2025-12-16 16:11:46,672 | INFO     | [monitor] control thread has ended
[2025-12-16 11:11:46] 2025-12-16 16:11:46,793 [wrapper] ==== pilot stdout END ====
[2025-12-16 11:11:46] 2025-12-16 16:11:46,796 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 11:11:46] 2025-12-16 16:11:46,798 [wrapper] pilotpid: 2410783
[2025-12-16 11:11:46] 2025-12-16 16:11:46,800 [wrapper] Pilot exit status: 0
[2025-12-16 11:11:46] 2025-12-16 16:11:46,810 [wrapper] pandaids: 6929806987
[2025-12-16 11:11:46] 2025-12-16 16:11:46,850 [wrapper] cleanup supervisor_pilot 2597071 2410784
[2025-12-16 11:11:46] 2025-12-16 16:11:46,852 [wrapper] Test setup, not cleaning
[2025-12-16 11:11:46] 2025-12-16 16:11:46,855 [wrapper] apfmon messages muted
[2025-12-16 11:11:46] 2025-12-16 16:11:46,858 [wrapper] ==== wrapper stdout END ====
[2025-12-16 11:11:46] 2025-12-16 16:11:46,860 [wrapper] ==== wrapper stderr END ====
[2025-12-16 11:11:46]  *** Error codes and diagnostics ***
[2025-12-16 11:11:46]     "exeErrorCode": 0,
[2025-12-16 11:11:46]     "exeErrorDiag": "",
[2025-12-16 11:11:46]     "pilotErrorCode": 0,
[2025-12-16 11:11:46]     "pilotErrorDiag": "",
[2025-12-16 11:11:46]  *** Listing of results directory ***
[2025-12-16 11:11:46] total 343360
[2025-12-16 11:11:46] -rw-r--r--. 1 boincer umatlas    579449 Dec 15 10:52 pilot3.tar.gz
[2025-12-16 11:11:46] -rw-r--r--. 1 boincer umatlas      5112 Dec 15 10:52 queuedata.json
[2025-12-16 11:11:46] -rwx------. 1 boincer umatlas     36322 Dec 15 10:52 runpilot2-wrapper.sh
[2025-12-16 11:11:46] -rw-r--r--. 1 boincer umatlas       100 Dec 16 09:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 11:11:46] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 16 09:21 run_atlas
[2025-12-16 11:11:46] -rw-r--r--. 1 boincer umatlas       105 Dec 16 09:21 job.xml
[2025-12-16 11:11:46] -rw-r--r--. 2 boincer umatlas 193764303 Dec 16 09:21 EVNT.47886929._000200.pool.root.1
[2025-12-16 11:11:46] -rw-r--r--. 2 boincer umatlas     15847 Dec 16 09:21 start_atlas.sh
[2025-12-16 11:11:46] drwxrwx--x. 2 boincer umatlas      4096 Dec 16 09:21 shared
[2025-12-16 11:11:46] -rw-r--r--. 2 boincer umatlas    592394 Dec 16 09:21 input.tar.gz
[2025-12-16 11:11:46] -rw-r--r--. 1 boincer umatlas         0 Dec 16 09:21 boinc_lockfile
[2025-12-16 11:11:46] -rw-r--r--. 1 boincer umatlas      2513 Dec 16 09:21 pandaJob.out
[2025-12-16 11:11:46] -rw-------. 1 boincer umatlas        57 Dec 16 09:21 setup.sh.local
[2025-12-16 11:11:46] -rw-------. 1 boincer umatlas    987355 Dec 16 09:21 agis_schedconf.cvmfs.json
[2025-12-16 11:11:46] -rw-------. 1 boincer umatlas   1516240 Dec 16 09:21 agis_ddmendpoints.agis.ALL.json
[2025-12-16 11:11:46] drwx------. 5 boincer umatlas      4096 Dec 16 09:21 pilot3
[2025-12-16 11:11:46] -rw-------. 1 boincer umatlas 151318898 Dec 16 11:10 HITS.47886933._005689.pool.root.1
[2025-12-16 11:11:46] -rw-r--r--. 1 boincer umatlas      6663 Dec 16 11:10 init_data.xml
[2025-12-16 11:11:46] -rw-r--r--. 1 boincer umatlas       529 Dec 16 11:10 boinc_task_state.xml
[2025-12-16 11:11:46] -rw-------. 1 boincer umatlas      1034 Dec 16 11:11 memory_monitor_summary.json
[2025-12-16 11:11:46] -rw-------. 1 boincer umatlas    346440 Dec 16 11:11 log.47886933._005689.job.log.tgz.1
[2025-12-16 11:11:46] -rw-------. 1 boincer umatlas      7815 Dec 16 11:11 heartbeat.json
[2025-12-16 11:11:46] -rw-r--r--. 1 boincer umatlas        27 Dec 16 11:11 wrapper_checkpoint.txt
[2025-12-16 11:11:46] -rw-r--r--. 1 boincer umatlas      8192 Dec 16 11:11 boinc_mmap_file
[2025-12-16 11:11:46] -rw-------. 1 boincer umatlas        95 Dec 16 11:11 pilot_heartbeat.json
[2025-12-16 11:11:46] -rw-------. 1 boincer umatlas       822 Dec 16 11:11 pilotlog.txt
[2025-12-16 11:11:46] -rw-------. 1 boincer umatlas    956049 Dec 16 11:11 log.47886933._005689.job.log.1
[2025-12-16 11:11:46] -rw-------. 1 boincer umatlas       357 Dec 16 11:11 output.list
[2025-12-16 11:11:46] -rw-r--r--. 1 boincer umatlas       620 Dec 16 11:11 runtime_log
[2025-12-16 11:11:46] -rw-------. 1 boincer umatlas   1320960 Dec 16 11:11 result.tar.gz
[2025-12-16 11:11:46] -rw-------. 1 boincer umatlas       652 Dec 16 11:11 tlGKDmM3Pp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm3jTKDm1C9xIm.diag
[2025-12-16 11:11:46] -rw-r--r--. 1 boincer umatlas      9342 Dec 16 11:11 runtime_log.err
[2025-12-16 11:11:46] -rw-r--r--. 1 boincer umatlas     21310 Dec 16 11:11 stderr.txt
[2025-12-16 11:11:46] HITS file was successfully produced:
[2025-12-16 11:11:46] -rw-------. 1 boincer umatlas 151318898 Dec 16 11:10 shared/HITS.pool.root.1
[2025-12-16 11:11:46]  *** Contents of shared directory: ***
[2025-12-16 11:11:46] total 338892
[2025-12-16 11:11:46] -rw-r--r--. 2 boincer umatlas 193764303 Dec 16 09:21 ATLAS.root_0
[2025-12-16 11:11:46] -rw-r--r--. 2 boincer umatlas     15847 Dec 16 09:21 start_atlas.sh
[2025-12-16 11:11:46] -rw-r--r--. 2 boincer umatlas    592394 Dec 16 09:21 input.tar.gz
[2025-12-16 11:11:46] -rw-------. 1 boincer umatlas 151318898 Dec 16 11:10 HITS.pool.root.1
[2025-12-16 11:11:46] -rw-------. 1 boincer umatlas   1320960 Dec 16 11:11 result.tar.gz
11:11:47 (2407112): run_atlas exited; CPU time 47863.354609
11:11:47 (2407112): called boinc_finish(0)

</stderr_txt>
]]>

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