Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:51:36 (3000962): wrapper (7.7.26015): starting
10:51:36 (3000962): wrapper: running run_atlas (--nthreads 4)
[2025-12-17 10:51:36] Arguments: --nthreads 4
[2025-12-17 10:51:36] Threads: 4
[2025-12-17 10:51:36] Checking for CVMFS
[2025-12-17 10:51:36] No cvmfs_config command found, will try listing directly
[2025-12-17 10:51:36] CVMFS is ok
[2025-12-17 10:51:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 10:51:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 10:51:36] Further information can be found at the LHC@home message board.
[2025-12-17 10:51:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 10:51:36] Checking for apptainer binary...
[2025-12-17 10:51:36] which: no apptainer in ((null))
[2025-12-17 10:51:36] apptainer is not installed, using version from CVMFS
[2025-12-17 10:51:36] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 10:51:36] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz
[2025-12-17 10:51:36] apptainer works
[2025-12-17 10:51:36] Set ATHENA_PROC_NUMBER=4
[2025-12-17 10:51:36] Set ATHENA_CORE_NUMBER=4
[2025-12-17 10:51:36] Starting ATLAS job with PandaID=6930228657
[2025-12-17 10:51:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 14:55:38]  *** The last 200 lines of the pilot log: ***
[2025-12-17 14:55:38] 2025-12-17 13:52:08,591 | INFO     | executing command: lscpu
[2025-12-17 14:55:38] 2025-12-17 13:52:08,645 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-17 14:55:38] 2025-12-17 13:52:08,658 | INFO     | time since job start (14419s) is within the limit (174528.0s)
[2025-12-17 14:55:38] 2025-12-17 13:52:10,181 | INFO     | monitor loop #1048: job 0:6930228657 is in state 'finished'
[2025-12-17 14:55:38] 2025-12-17 13:52:10,182 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 14:55:38] 2025-12-17 13:52:10,663 | INFO     | time since job start (14421s) is within the limit (174528.0s)
[2025-12-17 14:55:38] 2025-12-17 13:52:12,669 | INFO     | time since job start (14423s) is within the limit (174528.0s)
[2025-12-17 14:55:38] 2025-12-17 13:52:12,686 | INFO     | monitor loop #1049: job 0:6930228657 is in state 'finished'
[2025-12-17 14:55:38] 2025-12-17 13:52:12,686 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 14:55:38] 2025-12-17 13:52:12,774 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-17 14:55:38] 2025-12-17 13:52:12,784 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2664.523984375
[2025-12-17 14:55:38] 2025-12-17 13:52:12,797 | INFO     | using path: /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6930228657/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 14:55:38] 2025-12-17 13:52:12,798 | INFO     | extracted standard info from prmon json
[2025-12-17 14:55:38] 2025-12-17 13:52:12,798 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 14:55:38] 2025-12-17 13:52:12,798 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 14:55:38] 2025-12-17 13:52:12,798 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 14:55:38] 2025-12-17 13:52:12,798 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 14:55:38] 2025-12-17 13:52:12,803 | INFO     | fitting pss+swap vs Time
[2025-12-17 14:55:38] 2025-12-17 13:52:12,804 | INFO     | sum of square deviations: 4075741535.0
[2025-12-17 14:55:38] 2025-12-17 13:52:12,805 | INFO     | sum of deviations: -9978644618.000002
[2025-12-17 14:55:38] 2025-12-17 13:52:12,806 | INFO     | mean x: 1765972304.5
[2025-12-17 14:55:38] 2025-12-17 13:52:12,806 | INFO     | mean y: 2350981.6440677964
[2025-12-17 14:55:38] 2025-12-17 13:52:12,806 | INFO     | intersect: 4325983842.194433
[2025-12-17 14:55:38] 2025-12-17 13:52:12,806 | INFO     | chi2: 1.49976535743708
[2025-12-17 14:55:38] 2025-12-17 13:52:12,807 | INFO     | sum of square deviations: 3822136780.0
[2025-12-17 14:55:38] 2025-12-17 13:52:12,808 | INFO     | sum of deviations: -9840779737.999996
[2025-12-17 14:55:38] 2025-12-17 13:52:12,808 | INFO     | mean x: 1765972152.0
[2025-12-17 14:55:38] 2025-12-17 13:52:12,808 | INFO     | mean y: 2351064.5584415584
[2025-12-17 14:55:38] 2025-12-17 13:52:12,808 | INFO     | intersect: 4549164528.223614
[2025-12-17 14:55:38] 2025-12-17 13:52:12,809 | INFO     | chi2: 1.4988649991996332
[2025-12-17 14:55:38] 2025-12-17 13:52:12,809 | INFO     | current chi2=1.4988649991996332 (change=0.06003327340386924 %)
[2025-12-17 14:55:38] 2025-12-17 13:52:12,809 | INFO     | right removable region: 230
[2025-12-17 14:55:38] 2025-12-17 13:52:12,809 | INFO     | sum of square deviations: 3822136780.0
[2025-12-17 14:55:38] 2025-12-17 13:52:12,811 | INFO     | sum of deviations: -33516204048.000004
[2025-12-17 14:55:38] 2025-12-17 13:52:12,811 | INFO     | mean x: 1765972457.0
[2025-12-17 14:55:38] 2025-12-17 13:52:12,811 | INFO     | mean y: 2364916.3593073594
[2025-12-17 14:55:38] 2025-12-17 13:52:12,811 | INFO     | intersect: 15488125007.854494
[2025-12-17 14:55:38] 2025-12-17 13:52:12,811 | INFO     | chi2: 0.29161512478824075
[2025-12-17 14:55:38] 2025-12-17 13:52:12,812 | INFO     | current chi2=0.29161512478824075 (change=80.55595007964604 %)
[2025-12-17 14:55:38] 2025-12-17 13:52:12,812 | INFO     | sum of square deviations: 3579276412.5
[2025-12-17 14:55:38] 2025-12-17 13:52:12,813 | INFO     | sum of deviations: -22462099723.0
[2025-12-17 14:55:38] 2025-12-17 13:52:12,814 | INFO     | mean x: 1765972609.5
[2025-12-17 14:55:38] 2025-12-17 13:52:12,814 | INFO     | mean y: 2357961.1061946903
[2025-12-17 14:55:38] 2025-12-17 13:52:12,814 | INFO     | intersect: 11084892052.115166
[2025-12-17 14:55:38] 2025-12-17 13:52:12,814 | INFO     | chi2: 0.23197820777742587
[2025-12-17 14:55:38] 2025-12-17 13:52:12,814 | INFO     | current chi2=0.23197820777742587 (change=20.45055689553854 %)
[2025-12-17 14:55:38] 2025-12-17 13:52:12,814 | INFO     | left removable region: 20
[2025-12-17 14:55:38] 2025-12-17 13:52:12,815 | INFO     | sum of square deviations: 2871616632.5
[2025-12-17 14:55:38] 2025-12-17 13:52:12,816 | INFO     | sum of deviations: 3037433816.9999995
[2025-12-17 14:55:38] 2025-12-17 13:52:12,816 | INFO     | mean x: 1765972731.5
[2025-12-17 14:55:38] 2025-12-17 13:52:12,816 | INFO     | mean y: 2340467.780952381
[2025-12-17 14:55:38] 2025-12-17 13:52:12,816 | INFO     | intersect: -1865605703.6716397
[2025-12-17 14:55:38] 2025-12-17 13:52:12,817 | INFO     | chi2: 0.0010439875701967968
[2025-12-17 14:55:38] 2025-12-17 13:52:12,817 | INFO     | current memory leak: 1.06 B/s (using 210 data points, chi2=0.00)
[2025-12-17 14:55:38] 2025-12-17 13:52:12,817 | INFO     | could have reported an average CPU frequency of 2599 MHz (11 samples)
[2025-12-17 14:55:38] 2025-12-17 13:52:12,817 | INFO     | ..............................
[2025-12-17 14:55:38] 2025-12-17 13:52:12,818 | INFO     | . Timing measurements:
[2025-12-17 14:55:38] 2025-12-17 13:52:12,818 | INFO     | . get job = 0 s
[2025-12-17 14:55:38] 2025-12-17 13:52:12,818 | INFO     | . initial setup = 1 s
[2025-12-17 14:55:38] 2025-12-17 13:52:12,818 | INFO     | . payload setup = 6 s
[2025-12-17 14:55:38] 2025-12-17 13:52:12,818 | INFO     | . stage-in = 0 s
[2025-12-17 14:55:38] 2025-12-17 13:52:12,818 | INFO     | . payload execution = 14390 s
[2025-12-17 14:55:38] 2025-12-17 13:52:12,818 | INFO     | . stage-out = 1 s
[2025-12-17 14:55:38] 2025-12-17 13:52:12,818 | INFO     | . log creation = 0 s
[2025-12-17 14:55:38] 2025-12-17 13:52:12,818 | INFO     | ..............................
[2025-12-17 14:55:38] 2025-12-17 13:52:13,123 | INFO     | 
[2025-12-17 14:55:38] 2025-12-17 13:52:13,123 | INFO     | job summary report
[2025-12-17 14:55:38] 2025-12-17 13:52:13,123 | INFO     | --------------------------------------------------
[2025-12-17 14:55:38] 2025-12-17 13:52:13,123 | INFO     | PanDA job id: 6930228657
[2025-12-17 14:55:38] 2025-12-17 13:52:13,123 | INFO     | task id: 47905907
[2025-12-17 14:55:38] 2025-12-17 13:52:13,124 | INFO     | errors: (none)
[2025-12-17 14:55:38] 2025-12-17 13:52:13,124 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 14:55:38] 2025-12-17 13:52:13,124 | INFO     | pilot state: finished 
[2025-12-17 14:55:38] 2025-12-17 13:52:13,124 | INFO     | transexitcode: 0
[2025-12-17 14:55:38] 2025-12-17 13:52:13,124 | INFO     | exeerrorcode: 0
[2025-12-17 14:55:38] 2025-12-17 13:52:13,124 | INFO     | exeerrordiag: 
[2025-12-17 14:55:38] 2025-12-17 13:52:13,124 | INFO     | exitcode: 0
[2025-12-17 14:55:38] 2025-12-17 13:52:13,124 | INFO     | exitmsg: OK
[2025-12-17 14:55:38] 2025-12-17 13:52:13,124 | INFO     | cpuconsumptiontime: 55696 s
[2025-12-17 14:55:38] 2025-12-17 13:52:13,124 | INFO     | nevents: 400
[2025-12-17 14:55:38] 2025-12-17 13:52:13,124 | INFO     | neventsw: 0
[2025-12-17 14:55:38] 2025-12-17 13:52:13,124 | INFO     | pid: 3012490
[2025-12-17 14:55:38] 2025-12-17 13:52:13,125 | INFO     | pgrp: 3012490
[2025-12-17 14:55:38] 2025-12-17 13:52:13,125 | INFO     | corecount: 4
[2025-12-17 14:55:38] 2025-12-17 13:52:13,125 | INFO     | event service: False
[2025-12-17 14:55:38] 2025-12-17 13:52:13,125 | INFO     | sizes: {0: 2283692, 1: 2283947, 5: 2284209, 12: 2284265, 14401: 2314889, 14402: 2314888, 14404: 2324148, 14408: 2324286}
[2025-12-17 14:55:38] 2025-12-17 13:52:13,125 | INFO     | --------------------------------------------------
[2025-12-17 14:55:38] 2025-12-17 13:52:13,125 | INFO     | 
[2025-12-17 14:55:38] 2025-12-17 13:52:13,125 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2025-12-17 14:55:38] 2025-12-17 13:52:13,146 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 14:55:38] 2025-12-17 13:52:13,147 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 14:55:38] 2025-12-17 13:52:13,147 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 14:55:38] 2025-12-17 13:52:13,147 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 14:55:38] 2025-12-17 13:52:13,147 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 14:55:38] 2025-12-17 13:52:13,147 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 14:55:38] 2025-12-17 13:52:13,147 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 14:55:38] 2025-12-17 13:52:13,147 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 14:55:38] 2025-12-17 13:52:13,147 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 14:55:38] 2025-12-17 13:52:13,147 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 14:55:38] 2025-12-17 13:52:13,148 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 14:55:38] 2025-12-17 13:52:13,148 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 14:55:38] 2025-12-17 13:52:13,148 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 14:55:38] 2025-12-17 13:52:13,148 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 14:55:38] 2025-12-17 13:52:13,148 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 14:55:38] 2025-12-17 13:52:13,148 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 14:55:38] 2025-12-17 13:52:13,148 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 14:55:38] 2025-12-17 13:52:13,148 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 14:55:38] 2025-12-17 13:52:13,148 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 14:55:38] 2025-12-17 13:52:13,148 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 14:55:38] 2025-12-17 13:52:13,148 | INFO     | job 6930228657 has completed (purged errors)
[2025-12-17 14:55:38] 2025-12-17 13:52:13,149 | INFO     | overall cleanup function is called
[2025-12-17 14:55:38] 2025-12-17 13:52:14,156 | INFO     | --- collectZombieJob: --- 10, [3012490]
[2025-12-17 14:55:38] 2025-12-17 13:52:14,156 | INFO     | zombie collector waiting for pid 3012490
[2025-12-17 14:55:38] 2025-12-17 13:52:14,157 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 14:55:38] 2025-12-17 13:52:14,157 | INFO     | collected zombie processes
[2025-12-17 14:55:38] 2025-12-17 13:52:14,157 | INFO     | will attempt to kill all subprocesses of pid=3012490
[2025-12-17 14:55:38] 2025-12-17 13:52:14,539 | INFO     | process IDs to be killed: [3012490] (in reverse order)
[2025-12-17 14:55:38] 2025-12-17 13:52:14,650 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 14:55:38] 2025-12-17 13:52:14,651 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 14:55:38] 2025-12-17 13:52:14,664 | INFO     | did not find any defunct processes belonging to 3012490
[2025-12-17 14:55:38] 2025-12-17 13:52:14,677 | INFO     | did not find any defunct processes belonging to 3012490
[2025-12-17 14:55:38] 2025-12-17 13:52:14,678 | INFO     | ready for new job
[2025-12-17 14:55:38] 2025-12-17 13:52:14,678 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 14:55:38] 2025-12-17 13:52:14,680 | INFO     | ***************************************
[2025-12-17 14:55:38] 2025-12-17 13:52:14,681 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 14:55:38] 2025-12-17 13:52:14,681 | INFO     | ***************************************
[2025-12-17 14:55:38] 2025-12-17 13:52:14,681 | INFO     | 
[2025-12-17 14:55:38] 2025-12-17 13:52:14,685 | INFO     | architecture information:
[2025-12-17 14:55:38] 2025-12-17 13:52:14,685 | INFO     | executing command: cat /etc/os-release
[2025-12-17 14:55:38] 2025-12-17 13:52:14,702 | INFO     | cat /etc/os-release:
[2025-12-17 14:55:38] NAME="CentOS Linux"
[2025-12-17 14:55:38] VERSION="7 (Core)"
[2025-12-17 14:55:38] ID="centos"
[2025-12-17 14:55:38] ID_LIKE="rhel fedora"
[2025-12-17 14:55:38] VERSION_ID="7"
[2025-12-17 14:55:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 14:55:38] ANSI_COLOR="0;31"
[2025-12-17 14:55:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 14:55:38] HOME_URL="https://www.centos.org/"
[2025-12-17 14:55:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 14:55:38] 
[2025-12-17 14:55:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 14:55:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 14:55:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 14:55:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 14:55:38] 
[2025-12-17 14:55:38] 2025-12-17 13:52:14,702 | INFO     | ***************************************
[2025-12-17 14:55:38] 2025-12-17 13:52:15,205 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2025-12-17 14:55:38] 2025-12-17 13:52:15,223 | INFO     | sufficient remaining disk space (678289211392 B)
[2025-12-17 14:55:38] 2025-12-17 13:52:15,223 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 14:55:38] 2025-12-17 13:52:15,223 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 14:55:38] 2025-12-17 13:52:15,223 | INFO     | update_server=False
[2025-12-17 14:55:38] 2025-12-17 13:52:15,223 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 14:55:38] 2025-12-17 13:52:15,224 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 14:55:38] 2025-12-17 13:52:15,571 | INFO     | all job control threads have been joined
[2025-12-17 14:55:38] 2025-12-17 13:52:15,600 | INFO     | all data control threads have been joined
[2025-12-17 14:55:38] 2025-12-17 13:52:15,954 | INFO     | all payload control threads have been joined
[2025-12-17 14:55:38] 2025-12-17 13:52:16,198 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 14:55:38] 2025-12-17 13:52:16,199 | INFO     | aborting loop
[2025-12-17 14:55:38] 2025-12-17 13:52:16,229 | INFO     | [job] retrieve thread has finished
[2025-12-17 14:55:38] 2025-12-17 13:52:16,429 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 14:55:38] 2025-12-17 13:52:16,507 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 14:55:38] 2025-12-17 13:52:16,556 | INFO     | [payload] failed_post thread has finished
[2025-12-17 14:55:38] 2025-12-17 13:52:16,575 | INFO     | [job] control thread has finished
[2025-12-17 14:55:38] 2025-12-17 13:52:16,594 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 14:55:38] 2025-12-17 13:52:16,603 | INFO     | [data] control thread has finished
[2025-12-17 14:55:38] 2025-12-17 13:52:16,755 | INFO     | [data] copytool_in thread has finished
[2025-12-17 14:55:38] 2025-12-17 13:52:16,960 | INFO     | [payload] control thread has finished
[2025-12-17 14:55:38] 2025-12-17 13:52:17,204 | INFO     | [job] job monitor thread has finished
[2025-12-17 14:55:38] 2025-12-17 13:52:17,209 | INFO     | [payload] validate_post thread has finished
[2025-12-17 14:55:38] 2025-12-17 13:52:17,250 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 14:55:38] 2025-12-17 13:52:17,577 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 14:55:38] 2025-12-17 13:52:17,578 | INFO     | [job] validate thread has finished
[2025-12-17 14:55:38] 2025-12-17 13:52:17,924 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 14:55:38] 2025-12-17 13:52:18,512 | INFO     | [data] copytool_out thread has finished
[2025-12-17 14:55:38] 2025-12-17 13:52:18,930 | INFO     | [job] queue monitor thread has finished
[2025-12-17 14:55:38] 2025-12-17 13:52:19,231 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 14:55:38] 2025-12-17 13:52:46,236 | INFO     | PID=3005085 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-17 14:55:38] 2025-12-17 13:52:46,236 | INFO     | .. there are 4 such processes running
[2025-12-17 14:55:38] 2025-12-17 13:52:46,237 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 14:55:38] 2025-12-17 13:52:46,237 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 14:55:38] 2025-12-17 13:52:46,237 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 14:55:38] 2025-12-17 13:53:11,394 | INFO     | [monitor] cgroup control has ended
[2025-12-17 14:55:38] 2025-12-17 13:53:13,042 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23431114020672)>', '<ExcThread(monitor, started 23430877382400)>']
[2025-12-17 14:55:38] 2025-12-17 13:53:13,364 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 14:55:38] 2025-12-17 13:53:13,364 | INFO     | [monitor] control thread has ended
[2025-12-17 14:55:38] 2025-12-17 13:53:18,067 | INFO     | all workflow threads have been joined
[2025-12-17 14:55:38] 2025-12-17 13:53:18,068 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 14:55:38] 2025-12-17 13:53:18,068 | INFO     | traces error code: 0
[2025-12-17 14:55:38] 2025-12-17 13:53:18,068 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 14:55:38] 2025-12-17 13:53:18,245 [wrapper] ==== pilot stdout END ====
[2025-12-17 14:55:38] 2025-12-17 13:53:18,247 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 14:55:38] 2025-12-17 13:53:18,250 [wrapper] pilotpid: 3005085
[2025-12-17 14:55:38] 2025-12-17 13:53:18,253 [wrapper] Pilot exit status: 0
[2025-12-17 14:55:38] 2025-12-17 13:53:18,263 [wrapper] pandaids: 6930228657
[2025-12-17 14:55:38] 2025-12-17 13:53:18,338 [wrapper] cleanup supervisor_pilot 3252404 3005086
[2025-12-17 14:55:38] 2025-12-17 13:53:18,341 [wrapper] Test setup, not cleaning
[2025-12-17 14:55:38] 2025-12-17 13:53:18,344 [wrapper] apfmon messages muted
[2025-12-17 14:55:38] 2025-12-17 13:53:18,347 [wrapper] ==== wrapper stdout END ====
[2025-12-17 14:55:38] 2025-12-17 13:53:18,351 [wrapper] ==== wrapper stderr END ====
[2025-12-17 14:55:38]  *** Error codes and diagnostics ***
[2025-12-17 14:55:38]     "exeErrorCode": 0,
[2025-12-17 14:55:38]     "exeErrorDiag": "",
[2025-12-17 14:55:38]     "pilotErrorCode": 0,
[2025-12-17 14:55:38]     "pilotErrorDiag": "",
[2025-12-17 14:55:38]  *** Listing of results directory ***
[2025-12-17 14:55:38] total 413752
[2025-12-17 14:55:38] -rwx------ 1 boinc boinc     36322 Dec 16 03:09 runpilot2-wrapper.sh
[2025-12-17 14:55:38] -rw-r--r-- 1 boinc boinc    579449 Dec 16 03:12 pilot3.tar.gz
[2025-12-17 14:55:38] -rw-r--r-- 1 boinc boinc      5112 Dec 16 03:12 queuedata.json
[2025-12-17 14:55:38] -rw-r--r-- 1 boinc boinc       100 Dec 17 10:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 14:55:38] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 10:51 run_atlas
[2025-12-17 14:55:38] -rw-r--r-- 1 boinc boinc       105 Dec 17 10:51 job.xml
[2025-12-17 14:55:38] -rw-r--r-- 2 boinc boinc 206197286 Dec 17 10:51 EVNT.47905905._000011.pool.root.1
[2025-12-17 14:55:38] -rw-r--r-- 1 boinc boinc      6637 Dec 17 10:51 init_data.xml
[2025-12-17 14:55:38] -rw-r--r-- 2 boinc boinc     15847 Dec 17 10:51 start_atlas.sh
[2025-12-17 14:55:38] drwxrwx--x 2 boinc boinc      4096 Dec 17 10:51 shared
[2025-12-17 14:55:38] -rw-r--r-- 2 boinc boinc    592389 Dec 17 10:51 input.tar.gz
[2025-12-17 14:55:38] -rw-r--r-- 1 boinc boinc         0 Dec 17 10:51 boinc_lockfile
[2025-12-17 14:55:38] -rw-r--r-- 1 boinc boinc      2475 Dec 17 10:51 pandaJob.out
[2025-12-17 14:55:38] -rw------- 1 boinc boinc    987431 Dec 17 10:51 agis_schedconf.cvmfs.json
[2025-12-17 14:55:38] drwx------ 5 boinc boinc      4096 Dec 17 10:51 pilot3
[2025-12-17 14:55:38] -rw------- 1 boinc boinc 208663229 Dec 17 14:51 HITS.47905907._000669.pool.root.1
[2025-12-17 14:55:38] -rw-r--r-- 1 boinc boinc       528 Dec 17 14:51 boinc_task_state.xml
[2025-12-17 14:55:38] -rw------- 1 boinc boinc      1035 Dec 17 14:52 memory_monitor_summary.json
[2025-12-17 14:55:38] -rw------- 1 boinc boinc   1516240 Dec 17 14:52 agis_ddmendpoints.agis.ALL.json
[2025-12-17 14:55:38] -rw------- 1 boinc boinc    414128 Dec 17 14:52 log.47905907._000669.job.log.tgz.1
[2025-12-17 14:55:38] -rw------- 1 boinc boinc      7820 Dec 17 14:52 heartbeat.json
[2025-12-17 14:55:38] -rw------- 1 boinc boinc        95 Dec 17 14:52 pilot_heartbeat.json
[2025-12-17 14:55:38] -rw------- 1 boinc boinc      4833 Dec 17 14:53 pilotlog.txt
[2025-12-17 14:55:38] -rw------- 1 boinc boinc   2037295 Dec 17 14:53 log.47905907._000669.job.log.1
[2025-12-17 14:55:38] -rw------- 1 boinc boinc       357 Dec 17 14:53 output.list
[2025-12-17 14:55:38] -rw-r--r-- 1 boinc boinc       620 Dec 17 14:53 runtime_log
[2025-12-17 14:55:38] -rw------- 1 boinc boinc   2467840 Dec 17 14:53 result.tar.gz
[2025-12-17 14:55:38] -rw------- 1 boinc boinc       665 Dec 17 14:53 z1qNDmegZp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmYpUKDm6snmtm.diag
[2025-12-17 14:55:38] -rw-r--r-- 1 boinc boinc      9206 Dec 17 14:53 runtime_log.err
[2025-12-17 14:55:38] -rw-r--r-- 1 boinc boinc        26 Dec 17 14:55 wrapper_checkpoint.txt
[2025-12-17 14:55:38] -rw-r--r-- 1 boinc boinc      8192 Dec 17 14:55 boinc_mmap_file
[2025-12-17 14:55:38] -rw-r--r-- 1 boinc boinc     21191 Dec 17 14:55 stderr.txt
[2025-12-17 14:55:38] HITS file was successfully produced:
[2025-12-17 14:55:38] -rw------- 1 boinc boinc 208663229 Dec 17 14:51 shared/HITS.pool.root.1
[2025-12-17 14:55:38]  *** Contents of shared directory: ***
[2025-12-17 14:55:38] total 408160
[2025-12-17 14:55:38] -rw-r--r-- 2 boinc boinc 206197286 Dec 17 10:51 ATLAS.root_0
[2025-12-17 14:55:38] -rw-r--r-- 2 boinc boinc     15847 Dec 17 10:51 start_atlas.sh
[2025-12-17 14:55:38] -rw-r--r-- 2 boinc boinc    592389 Dec 17 10:51 input.tar.gz
[2025-12-17 14:55:38] -rw------- 1 boinc boinc 208663229 Dec 17 14:51 HITS.pool.root.1
[2025-12-17 14:55:38] -rw------- 1 boinc boinc   2467840 Dec 17 14:53 result.tar.gz
14:55:40 (3000962): run_atlas exited; CPU time 56311.363385
14:55:40 (3000962): called boinc_finish(0)

</stderr_txt>
]]>

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