Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:07:38 (3803767): wrapper (7.7.26015): starting
13:07:38 (3803767): wrapper: running run_atlas (--nthreads 11)
[2025-12-16 13:07:38] Arguments: --nthreads 11
[2025-12-16 13:07:38] Threads: 11
[2025-12-16 13:07:38] Checking for CVMFS
[2025-12-16 13:07:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 13:07:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 13:07:39] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 13:07:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 13:07:39] 2.13.3.0 5210 19850 348160 154081 0 692 23508040 32935937 21345 16776704 0 46241650 99.336 72505098 30948 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-16 13:07:39] CVMFS is ok
[2025-12-16 13:07:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 13:07:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 13:07:39] Further information can be found at the LHC@home message board.
[2025-12-16 13:07:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 13:07:39] Checking for apptainer binary...
[2025-12-16 13:07:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 13:07:39] Running /usr/bin/apptainer --version
[2025-12-16 13:07:39] apptainer version 1.4.5-2.el9
[2025-12-16 13:07:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 13:07:39] c6-1-26-2.aglt2.org
[2025-12-16 13:07:39] apptainer works
[2025-12-16 13:07:39] Set ATHENA_PROC_NUMBER=11
[2025-12-16 13:07:39] Set ATHENA_CORE_NUMBER=11
[2025-12-16 13:07:39] Starting ATLAS job with PandaID=6930225182
[2025-12-16 13:07:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 17:43:41]  *** The last 200 lines of the pilot log: ***
[2025-12-16 17:43:41] 2025-12-16 22:43:01,700 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6930225182/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 17:43:41] 2025-12-16 22:43:01,701 | INFO     | extracted standard info from prmon json
[2025-12-16 17:43:41] 2025-12-16 22:43:01,701 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 17:43:41] 2025-12-16 22:43:01,701 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 17:43:41] 2025-12-16 22:43:01,713 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 17:43:41] 2025-12-16 22:43:01,713 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 17:43:41] 2025-12-16 22:43:01,722 | INFO     | fitting pss+swap vs Time
[2025-12-16 17:43:41] 2025-12-16 22:43:01,723 | INFO     | sum of square deviations: 6035607854.2602
[2025-12-16 17:43:41] 2025-12-16 22:43:01,725 | INFO     | sum of deviations: 41217104343.535255
[2025-12-16 17:43:41] 2025-12-16 22:43:01,725 | INFO     | mean x: 1765916704.2639406
[2025-12-16 17:43:41] 2025-12-16 22:43:01,725 | INFO     | mean y: 2200710.4572490705
[2025-12-16 17:43:41] 2025-12-16 22:43:01,725 | INFO     | intersect: -12057226412.572815
[2025-12-16 17:43:41] 2025-12-16 22:43:01,725 | INFO     | chi2: 3.154706368732944
[2025-12-16 17:43:41] 2025-12-16 22:43:01,726 | INFO     | sum of square deviations: 5705230266.48488
[2025-12-16 17:43:41] 2025-12-16 22:43:01,736 | INFO     | sum of deviations: 75194706095.69699
[2025-12-16 17:43:41] 2025-12-16 22:43:01,736 | INFO     | mean x: 1765916551.7575758
[2025-12-16 17:43:41] 2025-12-16 22:43:01,736 | INFO     | mean y: 2216240.7765151514
[2025-12-16 17:43:41] 2025-12-16 22:43:01,736 | INFO     | intersect: -23272493086.731655
[2025-12-16 17:43:41] 2025-12-16 22:43:01,736 | INFO     | chi2: 1.6210779774334563
[2025-12-16 17:43:41] 2025-12-16 22:43:01,736 | INFO     | current chi2=1.6210779774334563 (change=48.613982160103674 %)
[2025-12-16 17:43:41] 2025-12-16 22:43:01,737 | INFO     | sum of square deviations: 5387163943.667995
[2025-12-16 17:43:41] 2025-12-16 22:43:01,746 | INFO     | sum of deviations: 73273339297.61778
[2025-12-16 17:43:41] 2025-12-16 22:43:01,746 | INFO     | mean x: 1765916399.2586873
[2025-12-16 17:43:41] 2025-12-16 22:43:01,746 | INFO     | mean y: 2215315.16988417
[2025-12-16 17:43:41] 2025-12-16 22:43:01,746 | INFO     | intersect: -24016840508.478855
[2025-12-16 17:43:41] 2025-12-16 22:43:01,746 | INFO     | chi2: 1.6193215151143763
[2025-12-16 17:43:41] 2025-12-16 22:43:01,746 | INFO     | current chi2=1.6193215151143763 (change=0.10835150088590356 %)
[2025-12-16 17:43:41] 2025-12-16 22:43:01,747 | INFO     | right removable region: 258
[2025-12-16 17:43:41] 2025-12-16 22:43:01,747 | INFO     | sum of square deviations: 5705235818.905318
[2025-12-16 17:43:41] 2025-12-16 22:43:01,749 | INFO     | sum of deviations: 2035258486.0265312
[2025-12-16 17:43:41] 2025-12-16 22:43:01,749 | INFO     | mean x: 1765916856.7689395
[2025-12-16 17:43:41] 2025-12-16 22:43:01,749 | INFO     | mean y: 2218684.3446969697
[2025-12-16 17:43:41] 2025-12-16 22:43:01,749 | INFO     | intersect: -627746032.7046139
[2025-12-16 17:43:41] 2025-12-16 22:43:01,749 | INFO     | chi2: 1.786232300739853
[2025-12-16 17:43:41] 2025-12-16 22:43:01,749 | INFO     | current chi2=1.786232300739853 (change=43.378809563906415 %)
[2025-12-16 17:43:41] 2025-12-16 22:43:01,755 | INFO     | sum of square deviations: 5387158943.081099
[2025-12-16 17:43:41] 2025-12-16 22:43:01,757 | INFO     | sum of deviations: -8918636333.54054
[2025-12-16 17:43:41] 2025-12-16 22:43:01,757 | INFO     | mean x: 1765917009.2702703
[2025-12-16 17:43:41] 2025-12-16 22:43:01,757 | INFO     | mean y: 2223960.436293436
[2025-12-16 17:43:41] 2025-12-16 22:43:01,757 | INFO     | intersect: 2925763393.2430353
[2025-12-16 17:43:41] 2025-12-16 22:43:01,757 | INFO     | chi2: 1.657125571706227
[2025-12-16 17:43:41] 2025-12-16 22:43:01,757 | INFO     | current chi2=1.657125571706227 (change=7.227880101605506 %)
[2025-12-16 17:43:41] 2025-12-16 22:43:01,757 | INFO     | left removable region: 20
[2025-12-16 17:43:41] 2025-12-16 22:43:01,758 | INFO     | sum of square deviations: 4180075414.2899137
[2025-12-16 17:43:41] 2025-12-16 22:43:01,765 | INFO     | sum of deviations: 16776021566.28991
[2025-12-16 17:43:41] 2025-12-16 22:43:01,765 | INFO     | mean x: 1765916978.7689075
[2025-12-16 17:43:41] 2025-12-16 22:43:01,766 | INFO     | mean y: 2243533.768907563
[2025-12-16 17:43:41] 2025-12-16 22:43:01,766 | INFO     | intersect: -7084963845.033191
[2025-12-16 17:43:41] 2025-12-16 22:43:01,766 | INFO     | chi2: 0.09046147476058009
[2025-12-16 17:43:41] 2025-12-16 22:43:01,766 | INFO     | current memory leak: 4.01 B/s (using 238 data points, chi2=0.09)
[2025-12-16 17:43:41] 2025-12-16 22:43:01,767 | INFO     | could have reported an average CPU frequency of 3079 MHz (12 samples)
[2025-12-16 17:43:41] 2025-12-16 22:43:01,767 | INFO     | ..............................
[2025-12-16 17:43:41] 2025-12-16 22:43:01,767 | INFO     | . Timing measurements:
[2025-12-16 17:43:41] 2025-12-16 22:43:01,767 | INFO     | . get job = 0 s
[2025-12-16 17:43:41] 2025-12-16 22:43:01,767 | INFO     | . initial setup = 3 s
[2025-12-16 17:43:41] 2025-12-16 22:43:01,767 | INFO     | . payload setup = 9 s
[2025-12-16 17:43:41] 2025-12-16 22:43:01,767 | INFO     | . stage-in = 0 s
[2025-12-16 17:43:41] 2025-12-16 22:43:01,767 | INFO     | . payload execution = 16397 s
[2025-12-16 17:43:41] 2025-12-16 22:43:01,767 | INFO     | . stage-out = 6 s
[2025-12-16 17:43:41] 2025-12-16 22:43:01,767 | INFO     | . log creation = 1 s
[2025-12-16 17:43:41] 2025-12-16 22:43:01,767 | INFO     | ..............................
[2025-12-16 17:43:41] 2025-12-16 22:43:02,539 | INFO     | 
[2025-12-16 17:43:41] 2025-12-16 22:43:02,539 | INFO     | job summary report
[2025-12-16 17:43:41] 2025-12-16 22:43:02,539 | INFO     | --------------------------------------------------
[2025-12-16 17:43:41] 2025-12-16 22:43:02,539 | INFO     | PanDA job id: 6930225182
[2025-12-16 17:43:41] 2025-12-16 22:43:02,540 | INFO     | task id: 47886831
[2025-12-16 17:43:41] 2025-12-16 22:43:02,540 | INFO     | errors: (none)
[2025-12-16 17:43:41] 2025-12-16 22:43:02,540 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 17:43:41] 2025-12-16 22:43:02,540 | INFO     | pilot state: finished 
[2025-12-16 17:43:41] 2025-12-16 22:43:02,540 | INFO     | transexitcode: 0
[2025-12-16 17:43:41] 2025-12-16 22:43:02,540 | INFO     | exeerrorcode: 0
[2025-12-16 17:43:41] 2025-12-16 22:43:02,540 | INFO     | exeerrordiag: 
[2025-12-16 17:43:41] 2025-12-16 22:43:02,540 | INFO     | exitcode: 0
[2025-12-16 17:43:41] 2025-12-16 22:43:02,540 | INFO     | exitmsg: OK
[2025-12-16 17:43:41] 2025-12-16 22:43:02,540 | INFO     | cpuconsumptiontime: 41403 s
[2025-12-16 17:43:41] 2025-12-16 22:43:02,540 | INFO     | nevents: 400
[2025-12-16 17:43:41] 2025-12-16 22:43:02,540 | INFO     | neventsw: 0
[2025-12-16 17:43:41] 2025-12-16 22:43:02,540 | INFO     | pid: 3814538
[2025-12-16 17:43:41] 2025-12-16 22:43:02,540 | INFO     | pgrp: 3814538
[2025-12-16 17:43:41] 2025-12-16 22:43:02,540 | INFO     | corecount: 11
[2025-12-16 17:43:41] 2025-12-16 22:43:02,541 | INFO     | event service: False
[2025-12-16 17:43:41] 2025-12-16 22:43:02,541 | INFO     | sizes: {0: 2283161, 1: 2284017, 12: 2284279, 23: 2284307, 16411: 2315619, 16412: 2315618, 16419: 2324800, 16423: 2324856, 16470: 2325050}
[2025-12-16 17:43:41] 2025-12-16 22:43:02,541 | INFO     | --------------------------------------------------
[2025-12-16 17:43:41] 2025-12-16 22:43:02,541 | INFO     | 
[2025-12-16 17:43:41] 2025-12-16 22:43:02,541 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-16 17:43:41] 2025-12-16 22:43:02,826 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 17:43:41] 2025-12-16 22:43:02,827 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 17:43:41] 2025-12-16 22:43:02,827 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 17:43:41] 2025-12-16 22:43:02,827 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 17:43:41] 2025-12-16 22:43:02,827 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 17:43:41] 2025-12-16 22:43:02,827 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 17:43:41] 2025-12-16 22:43:02,827 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 17:43:41] 2025-12-16 22:43:02,827 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 17:43:41] 2025-12-16 22:43:02,827 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 17:43:41] 2025-12-16 22:43:02,827 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 17:43:41] 2025-12-16 22:43:02,827 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 17:43:41] 2025-12-16 22:43:02,828 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 17:43:41] 2025-12-16 22:43:02,828 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 17:43:41] 2025-12-16 22:43:02,828 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 17:43:41] 2025-12-16 22:43:02,828 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 17:43:41] 2025-12-16 22:43:02,828 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 17:43:41] 2025-12-16 22:43:02,828 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 17:43:41] 2025-12-16 22:43:02,828 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 17:43:41] 2025-12-16 22:43:02,828 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 17:43:41] 2025-12-16 22:43:02,828 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 17:43:41] 2025-12-16 22:43:02,829 | INFO     | job 6930225182 has completed (purged errors)
[2025-12-16 17:43:41] 2025-12-16 22:43:02,829 | INFO     | overall cleanup function is called
[2025-12-16 17:43:41] 2025-12-16 22:43:03,871 | INFO     | --- collectZombieJob: --- 10, [3814538]
[2025-12-16 17:43:41] 2025-12-16 22:43:03,872 | INFO     | zombie collector waiting for pid 3814538
[2025-12-16 17:43:41] 2025-12-16 22:43:03,872 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 17:43:41] 2025-12-16 22:43:03,872 | INFO     | collected zombie processes
[2025-12-16 17:43:41] 2025-12-16 22:43:03,872 | INFO     | will attempt to kill all subprocesses of pid=3814538
[2025-12-16 17:43:41] 2025-12-16 22:43:04,342 | INFO     | PID=3807532 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 17:43:41] 2025-12-16 22:43:04,342 | INFO     | .. there are 23 such processes running
[2025-12-16 17:43:41] 2025-12-16 22:43:04,670 | INFO     | process IDs to be killed: [3814538] (in reverse order)
[2025-12-16 17:43:41] 2025-12-16 22:43:05,130 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 17:43:41] 2025-12-16 22:43:05,131 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 17:43:41] 2025-12-16 22:43:05,241 | INFO     | did not find any defunct processes belonging to 3814538
[2025-12-16 17:43:41] 2025-12-16 22:43:05,388 | INFO     | did not find any defunct processes belonging to 3814538
[2025-12-16 17:43:41] 2025-12-16 22:43:05,389 | INFO     | ready for new job
[2025-12-16 17:43:41] 2025-12-16 22:43:05,389 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 17:43:41] 2025-12-16 22:43:05,424 | INFO     | ***************************************
[2025-12-16 17:43:41] 2025-12-16 22:43:05,424 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 17:43:41] 2025-12-16 22:43:05,424 | INFO     | ***************************************
[2025-12-16 17:43:41] 2025-12-16 22:43:05,424 | INFO     | 
[2025-12-16 17:43:41] 2025-12-16 22:43:05,465 | INFO     | architecture information:
[2025-12-16 17:43:41] 2025-12-16 22:43:05,500 | INFO     | executing command: cat /etc/os-release
[2025-12-16 17:43:41] 2025-12-16 22:43:05,648 | INFO     | cat /etc/os-release:
[2025-12-16 17:43:41] NAME="CentOS Linux"
[2025-12-16 17:43:41] VERSION="7 (Core)"
[2025-12-16 17:43:41] ID="centos"
[2025-12-16 17:43:41] ID_LIKE="rhel fedora"
[2025-12-16 17:43:41] VERSION_ID="7"
[2025-12-16 17:43:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 17:43:41] ANSI_COLOR="0;31"
[2025-12-16 17:43:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 17:43:41] HOME_URL="https://www.centos.org/"
[2025-12-16 17:43:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 17:43:41] 
[2025-12-16 17:43:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 17:43:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 17:43:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 17:43:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 17:43:41] 
[2025-12-16 17:43:41] 2025-12-16 22:43:05,648 | INFO     | ***************************************
[2025-12-16 17:43:41] 2025-12-16 22:43:06,152 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-16 17:43:41] 2025-12-16 22:43:06,295 | INFO     | sufficient remaining disk space (75913756672 B)
[2025-12-16 17:43:41] 2025-12-16 22:43:06,295 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 17:43:41] 2025-12-16 22:43:06,296 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 17:43:41] 2025-12-16 22:43:06,296 | INFO     | update_server=False
[2025-12-16 17:43:41] 2025-12-16 22:43:06,296 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 17:43:41] 2025-12-16 22:43:06,487 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-16 17:43:41] 2025-12-16 22:43:06,488 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-16 17:43:41] 2025-12-16 22:43:06,489 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 17:43:41] 2025-12-16 22:43:06,489 | INFO     | will abort loop
[2025-12-16 17:43:41] 2025-12-16 22:43:06,508 | INFO     | all payload control threads have been joined
[2025-12-16 17:43:41] 2025-12-16 22:43:06,621 | INFO     | all data control threads have been joined
[2025-12-16 17:43:41] 2025-12-16 22:43:07,159 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 17:43:41] 2025-12-16 22:43:07,263 | INFO     | all job control threads have been joined
[2025-12-16 17:43:41] 2025-12-16 22:43:07,302 | INFO     | [job] retrieve thread has finished
[2025-12-16 17:43:41] 2025-12-16 22:43:07,307 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 17:43:41] 2025-12-16 22:43:07,312 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 17:43:41] 2025-12-16 22:43:07,496 | INFO     | [job] job monitor thread has finished
[2025-12-16 17:43:41] 2025-12-16 22:43:07,515 | INFO     | [payload] control thread has finished
[2025-12-16 17:43:41] 2025-12-16 22:43:07,549 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 17:43:41] 2025-12-16 22:43:07,566 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 17:43:41] 2025-12-16 22:43:07,628 | INFO     | [data] control thread has finished
[2025-12-16 17:43:41] 2025-12-16 22:43:07,704 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 17:43:41] 2025-12-16 22:43:07,704 | INFO     | [job] validate thread has finished
[2025-12-16 17:43:41] 2025-12-16 22:43:07,986 | INFO     | [payload] failed_post thread has finished
[2025-12-16 17:43:41] 2025-12-16 22:43:08,061 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 17:43:41] 2025-12-16 22:43:08,270 | INFO     | [job] control thread has finished
[2025-12-16 17:43:41] 2025-12-16 22:43:08,573 | INFO     | [job] queue monitor thread has finished
[2025-12-16 17:43:41] 2025-12-16 22:43:08,581 | INFO     | [data] copytool_in thread has finished
[2025-12-16 17:43:41] 2025-12-16 22:43:08,841 | INFO     | [payload] validate_post thread has finished
[2025-12-16 17:43:41] 2025-12-16 22:43:09,321 | INFO     | [data] copytool_out thread has finished
[2025-12-16 17:43:41] 2025-12-16 22:43:11,169 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 17:43:41] 2025-12-16 22:43:28,232 | INFO     | [monitor] cgroup control has ended
[2025-12-16 17:43:41] 2025-12-16 22:43:29,177 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139686309676864)>', '<ExcThread(monitor, started 139685665949440)>']
[2025-12-16 17:43:41] 2025-12-16 22:43:34,202 | INFO     | all workflow threads have been joined
[2025-12-16 17:43:41] 2025-12-16 22:43:34,203 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 17:43:41] 2025-12-16 22:43:34,203 | INFO     | traces error code: 0
[2025-12-16 17:43:41] 2025-12-16 22:43:34,205 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 17:43:41] 2025-12-16 22:43:37,710 | INFO     | PID=3807532 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 17:43:41] 2025-12-16 22:43:37,716 | INFO     | .. there are 23 such processes running
[2025-12-16 17:43:41] 2025-12-16 22:43:37,717 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 17:43:41] 2025-12-16 22:43:37,717 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 17:43:41] 2025-12-16 22:43:37,717 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 17:43:41] 2025-12-16 22:43:37,717 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 17:43:41] 2025-12-16 22:43:37,717 | INFO     | [monitor] control thread has ended
[2025-12-16 17:43:41] 2025-12-16 22:43:39,431 [wrapper] ==== pilot stdout END ====
[2025-12-16 17:43:41] 2025-12-16 22:43:39,481 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 17:43:41] 2025-12-16 22:43:39,510 [wrapper] pilotpid: 3807532
[2025-12-16 17:43:41] 2025-12-16 22:43:39,533 [wrapper] Pilot exit status: 0
[2025-12-16 17:43:41] 2025-12-16 22:43:39,647 [wrapper] pandaids: 6930225182
[2025-12-16 17:43:41] 2025-12-16 22:43:40,283 [wrapper] cleanup supervisor_pilot  539167 3807533
[2025-12-16 17:43:41] 2025-12-16 22:43:40,328 [wrapper] Test setup, not cleaning
[2025-12-16 17:43:41] 2025-12-16 22:43:40,373 [wrapper] apfmon messages muted
[2025-12-16 17:43:41] 2025-12-16 22:43:40,413 [wrapper] ==== wrapper stdout END ====
[2025-12-16 17:43:41] 2025-12-16 22:43:40,455 [wrapper] ==== wrapper stderr END ====
[2025-12-16 17:43:41]  *** Error codes and diagnostics ***
[2025-12-16 17:43:41]     "exeErrorCode": 0,
[2025-12-16 17:43:41]     "exeErrorDiag": "",
[2025-12-16 17:43:41]     "pilotErrorCode": 0,
[2025-12-16 17:43:41]     "pilotErrorDiag": "",
[2025-12-16 17:43:41]  *** Listing of results directory ***
[2025-12-16 17:43:41] total 342916
[2025-12-16 17:43:41] -rw-r--r--. 1 boincer umatlas    579449 Dec 15 15:57 pilot3.tar.gz
[2025-12-16 17:43:41] -rw-r--r--. 1 boincer umatlas      5112 Dec 15 15:57 queuedata.json
[2025-12-16 17:43:41] -rwx------. 1 boincer umatlas     36322 Dec 15 15:58 runpilot2-wrapper.sh
[2025-12-16 17:43:41] -rw-r--r--. 1 boincer umatlas       100 Dec 16 13:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 17:43:41] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 16 13:07 run_atlas
[2025-12-16 17:43:41] -rw-r--r--. 1 boincer umatlas       105 Dec 16 13:07 job.xml
[2025-12-16 17:43:41] -rw-r--r--. 2 boincer umatlas 190501738 Dec 16 13:07 EVNT.47886829._000394.pool.root.1
[2025-12-16 17:43:41] -rw-r--r--. 2 boincer umatlas     15847 Dec 16 13:07 start_atlas.sh
[2025-12-16 17:43:41] drwxrwx--x. 2 boincer umatlas      4096 Dec 16 13:07 shared
[2025-12-16 17:43:41] -rw-r--r--. 2 boincer umatlas    592406 Dec 16 13:07 input.tar.gz
[2025-12-16 17:43:41] -rw-r--r--. 1 boincer umatlas         0 Dec 16 13:07 boinc_lockfile
[2025-12-16 17:43:41] -rw-r--r--. 1 boincer umatlas      2537 Dec 16 13:07 pandaJob.out
[2025-12-16 17:43:41] -rw-------. 1 boincer umatlas        57 Dec 16 13:07 setup.sh.local
[2025-12-16 17:43:41] -rw-------. 1 boincer umatlas    987401 Dec 16 13:07 agis_schedconf.cvmfs.json
[2025-12-16 17:43:41] drwx------. 5 boincer umatlas      4096 Dec 16 13:07 pilot3
[2025-12-16 17:43:41] -rw-r--r--. 1 boincer umatlas      6844 Dec 16 17:39 init_data.xml
[2025-12-16 17:43:41] -rw-------. 1 boincer umatlas 151587210 Dec 16 17:39 HITS.47886831._009988.pool.root.1
[2025-12-16 17:43:41] -rw-r--r--. 1 boincer umatlas       531 Dec 16 17:40 boinc_task_state.xml
[2025-12-16 17:43:41] -rw-------. 1 boincer umatlas      1042 Dec 16 17:41 memory_monitor_summary.json
[2025-12-16 17:43:41] -rw-------. 1 boincer umatlas   1516240 Dec 16 17:42 agis_ddmendpoints.agis.ALL.json
[2025-12-16 17:43:41] -rw-------. 1 boincer umatlas    521882 Dec 16 17:42 log.47886831._009988.job.log.tgz.1
[2025-12-16 17:43:41] -rw-------. 1 boincer umatlas      7822 Dec 16 17:43 heartbeat.json
[2025-12-16 17:43:41] -rw-r--r--. 1 boincer umatlas      8192 Dec 16 17:43 boinc_mmap_file
[2025-12-16 17:43:41] -rw-r--r--. 1 boincer umatlas        28 Dec 16 17:43 wrapper_checkpoint.txt
[2025-12-16 17:43:41] -rw-------. 1 boincer umatlas        95 Dec 16 17:43 pilot_heartbeat.json
[2025-12-16 17:43:41] -rw-------. 1 boincer umatlas       823 Dec 16 17:43 pilotlog.txt
[2025-12-16 17:43:41] -rw-------. 1 boincer umatlas   2050977 Dec 16 17:43 log.47886831._009988.job.log.1
[2025-12-16 17:43:41] -rw-------. 1 boincer umatlas       357 Dec 16 17:43 output.list
[2025-12-16 17:43:41] -rw-r--r--. 1 boincer umatlas       620 Dec 16 17:43 runtime_log
[2025-12-16 17:43:41] -rw-------. 1 boincer umatlas   2590720 Dec 16 17:43 result.tar.gz
[2025-12-16 17:43:41] -rw-r--r--. 1 boincer umatlas      9350 Dec 16 17:43 runtime_log.err
[2025-12-16 17:43:41] -rw-------. 1 boincer umatlas       658 Dec 16 17:43 FaYLDm2oUp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmdGUKDmYLp9Bn.diag
[2025-12-16 17:43:41] -rw-r--r--. 1 boincer umatlas     21278 Dec 16 17:43 stderr.txt
[2025-12-16 17:43:41] HITS file was successfully produced:
[2025-12-16 17:43:41] -rw-------. 1 boincer umatlas 151587210 Dec 16 17:39 shared/HITS.pool.root.1
[2025-12-16 17:43:41]  *** Contents of shared directory: ***
[2025-12-16 17:43:41] total 337208
[2025-12-16 17:43:41] -rw-r--r--. 2 boincer umatlas 190501738 Dec 16 13:07 ATLAS.root_0
[2025-12-16 17:43:41] -rw-r--r--. 2 boincer umatlas     15847 Dec 16 13:07 start_atlas.sh
[2025-12-16 17:43:41] -rw-r--r--. 2 boincer umatlas    592406 Dec 16 13:07 input.tar.gz
[2025-12-16 17:43:41] -rw-------. 1 boincer umatlas 151587210 Dec 16 17:39 HITS.pool.root.1
[2025-12-16 17:43:41] -rw-------. 1 boincer umatlas   2590720 Dec 16 17:43 result.tar.gz
17:43:42 (3803767): run_atlas exited; CPU time 41882.752129
17:43:42 (3803767): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN