Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:30:19 (19021): wrapper (7.7.26015): starting
07:30:19 (19021): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 07:30:19] Arguments: --nthreads 8
[2025-12-16 07:30:19] Threads: 8
[2025-12-16 07:30:19] Checking for CVMFS
[2025-12-16 07:30:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 07:30:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 07:30:19] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 07:30:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 07:30:20] 2.11.2.0 2929 21389 83244 154071 3 57 13657419 20275200 1 130560 0 6348231 99.891 1211595 28290 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-16 07:30:20] CVMFS is ok
[2025-12-16 07:30:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 07:30:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 07:30:20] Further information can be found at the LHC@home message board.
[2025-12-16 07:30:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 07:30:20] Checking for apptainer binary...
[2025-12-16 07:30:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 07:30:20] Running /usr/bin/apptainer --version
[2025-12-16 07:30:20] apptainer version 1.3.2-1.el7
[2025-12-16 07:30:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 07:30:21] c-115-9.aglt2.org
[2025-12-16 07:30:21] apptainer works
[2025-12-16 07:30:21] Set ATHENA_PROC_NUMBER=8
[2025-12-16 07:30:21] Set ATHENA_CORE_NUMBER=8
[2025-12-16 07:30:21] Starting ATLAS job with PandaID=6930761417
[2025-12-16 07:30:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 09:32:56]  *** The last 200 lines of the pilot log: ***
[2025-12-16 09:32:56] 2025-12-16 14:32:07,076 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 09:32:56] 2025-12-16 14:32:08,593 | INFO     | time since job start (7290s) is within the limit (174528.0s)
[2025-12-16 09:32:56] 2025-12-16 14:32:09,579 | INFO     | monitor loop #542: job 0:6930761417 is in state 'finished'
[2025-12-16 09:32:56] 2025-12-16 14:32:09,579 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 09:32:56] 2025-12-16 14:32:10,598 | INFO     | time since job start (7292s) is within the limit (174528.0s)
[2025-12-16 09:32:56] 2025-12-16 14:32:11,711 | INFO     | PID=22695 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 09:32:56] 2025-12-16 14:32:12,082 | INFO     | monitor loop #543: job 0:6930761417 is in state 'finished'
[2025-12-16 09:32:56] 2025-12-16 14:32:12,082 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 09:32:56] 2025-12-16 14:32:12,478 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-16 09:32:56] 2025-12-16 14:32:12,481 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1729.125
[2025-12-16 09:32:56] 2025-12-16 14:32:12,483 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6930761417/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 09:32:56] 2025-12-16 14:32:12,483 | INFO     | extracted standard info from prmon json
[2025-12-16 09:32:56] 2025-12-16 14:32:12,483 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 09:32:56] 2025-12-16 14:32:12,483 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 09:32:56] 2025-12-16 14:32:12,484 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 09:32:56] 2025-12-16 14:32:12,484 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 09:32:56] 2025-12-16 14:32:12,486 | INFO     | fitting pss+swap vs Time
[2025-12-16 09:32:56] 2025-12-16 14:32:12,486 | INFO     | sum of square deviations: 522502820.0
[2025-12-16 09:32:56] 2025-12-16 14:32:12,487 | INFO     | sum of deviations: -5492498438.000002
[2025-12-16 09:32:56] 2025-12-16 14:32:12,487 | INFO     | mean x: 1765891868.0
[2025-12-16 09:32:56] 2025-12-16 14:32:12,487 | INFO     | mean y: 2562928.848739496
[2025-12-16 09:32:56] 2025-12-16 14:32:12,487 | INFO     | intersect: 18565445185.95676
[2025-12-16 09:32:56] 2025-12-16 14:32:12,487 | INFO     | chi2: 1.5534308142132436
[2025-12-16 09:32:56] 2025-12-16 14:32:12,488 | INFO     | sum of square deviations: 459366752.5
[2025-12-16 09:32:56] 2025-12-16 14:32:12,488 | INFO     | sum of deviations: -4675713256.999999
[2025-12-16 09:32:56] 2025-12-16 14:32:12,488 | INFO     | mean x: 1765891715.5
[2025-12-16 09:32:56] 2025-12-16 14:32:12,488 | INFO     | mean y: 2564902.9122807016
[2025-12-16 09:32:56] 2025-12-16 14:32:12,489 | INFO     | intersect: 17976881197.36335
[2025-12-16 09:32:56] 2025-12-16 14:32:12,489 | INFO     | chi2: 1.554202588194134
[2025-12-16 09:32:56] 2025-12-16 14:32:12,489 | INFO     | current chi2=1.554202588194134 (change=-0.04968190239493994 %)
[2025-12-16 09:32:56] 2025-12-16 14:32:12,489 | INFO     | right removable region: 113
[2025-12-16 09:32:56] 2025-12-16 14:32:12,489 | INFO     | sum of square deviations: 459366752.5
[2025-12-16 09:32:56] 2025-12-16 14:32:12,490 | INFO     | sum of deviations: -23062223396.000004
[2025-12-16 09:32:56] 2025-12-16 14:32:12,490 | INFO     | mean x: 1765892020.5
[2025-12-16 09:32:56] 2025-12-16 14:32:12,490 | INFO     | mean y: 2604536.5789473685
[2025-12-16 09:32:56] 2025-12-16 14:32:12,490 | INFO     | intersect: 88658120087.81558
[2025-12-16 09:32:56] 2025-12-16 14:32:12,490 | INFO     | chi2: 0.10117166120853291
[2025-12-16 09:32:56] 2025-12-16 14:32:12,490 | INFO     | current chi2=0.10117166120853291 (change=93.48721164258784 %)
[2025-12-16 09:32:56] 2025-12-16 14:32:12,491 | INFO     | sum of square deviations: 401533110.0
[2025-12-16 09:32:56] 2025-12-16 14:32:12,491 | INFO     | sum of deviations: -20625858752.000004
[2025-12-16 09:32:56] 2025-12-16 14:32:12,491 | INFO     | mean x: 1765892173.0
[2025-12-16 09:32:56] 2025-12-16 14:32:12,491 | INFO     | mean y: 2598089.2935779816
[2025-12-16 09:32:56] 2025-12-16 14:32:12,492 | INFO     | intersect: 90712533644.94516
[2025-12-16 09:32:56] 2025-12-16 14:32:12,492 | INFO     | chi2: 0.10041718700266519
[2025-12-16 09:32:56] 2025-12-16 14:32:12,492 | INFO     | current chi2=0.10041718700266519 (change=0.7457366982564517 %)
[2025-12-16 09:32:56] 2025-12-16 14:32:12,492 | INFO     | left removable region: 20
[2025-12-16 09:32:56] 2025-12-16 14:32:12,492 | INFO     | sum of square deviations: 249388862.0
[2025-12-16 09:32:56] 2025-12-16 14:32:12,493 | INFO     | sum of deviations: -13440559928.000002
[2025-12-16 09:32:56] 2025-12-16 14:32:12,493 | INFO     | mean x: 1765892295.0
[2025-12-16 09:32:56] 2025-12-16 14:32:12,493 | INFO     | mean y: 2583606.5483870967
[2025-12-16 09:32:56] 2025-12-16 14:32:12,493 | INFO     | intersect: 95173558873.84383
[2025-12-16 09:32:56] 2025-12-16 14:32:12,493 | INFO     | chi2: 0.09205723871644127
[2025-12-16 09:32:56] 2025-12-16 14:32:12,493 | INFO     | current memory leak: -53.89 B/s (using 93 data points, chi2=0.09)
[2025-12-16 09:32:56] 2025-12-16 14:32:12,494 | INFO     | could have reported an average CPU frequency of 2085 MHz (7 samples)
[2025-12-16 09:32:56] 2025-12-16 14:32:12,494 | INFO     | ..............................
[2025-12-16 09:32:56] 2025-12-16 14:32:12,494 | INFO     | . Timing measurements:
[2025-12-16 09:32:56] 2025-12-16 14:32:12,494 | INFO     | . get job = 0 s
[2025-12-16 09:32:56] 2025-12-16 14:32:12,494 | INFO     | . initial setup = 2 s
[2025-12-16 09:32:56] 2025-12-16 14:32:12,494 | INFO     | . payload setup = 8 s
[2025-12-16 09:32:56] 2025-12-16 14:32:12,494 | INFO     | . stage-in = 0 s
[2025-12-16 09:32:56] 2025-12-16 14:32:12,494 | INFO     | . payload execution = 7256 s
[2025-12-16 09:32:56] 2025-12-16 14:32:12,494 | INFO     | . stage-out = 0 s
[2025-12-16 09:32:56] 2025-12-16 14:32:12,495 | INFO     | . log creation = 0 s
[2025-12-16 09:32:56] 2025-12-16 14:32:12,495 | INFO     | ..............................
[2025-12-16 09:32:56] 2025-12-16 14:32:12,574 | INFO     | 
[2025-12-16 09:32:56] 2025-12-16 14:32:12,575 | INFO     | job summary report
[2025-12-16 09:32:56] 2025-12-16 14:32:12,575 | INFO     | --------------------------------------------------
[2025-12-16 09:32:56] 2025-12-16 14:32:12,575 | INFO     | PanDA job id: 6930761417
[2025-12-16 09:32:56] 2025-12-16 14:32:12,575 | INFO     | task id: 47886831
[2025-12-16 09:32:56] 2025-12-16 14:32:12,576 | INFO     | errors: (none)
[2025-12-16 09:32:56] 2025-12-16 14:32:12,576 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 09:32:56] 2025-12-16 14:32:12,576 | INFO     | pilot state: finished 
[2025-12-16 09:32:56] 2025-12-16 14:32:12,576 | INFO     | transexitcode: 0
[2025-12-16 09:32:56] 2025-12-16 14:32:12,576 | INFO     | exeerrorcode: 0
[2025-12-16 09:32:56] 2025-12-16 14:32:12,577 | INFO     | exeerrordiag: 
[2025-12-16 09:32:56] 2025-12-16 14:32:12,577 | INFO     | exitcode: 0
[2025-12-16 09:32:56] 2025-12-16 14:32:12,577 | INFO     | exitmsg: OK
[2025-12-16 09:32:56] 2025-12-16 14:32:12,577 | INFO     | cpuconsumptiontime: 54658 s
[2025-12-16 09:32:56] 2025-12-16 14:32:12,577 | INFO     | nevents: 400
[2025-12-16 09:32:56] 2025-12-16 14:32:12,577 | INFO     | neventsw: 0
[2025-12-16 09:32:56] 2025-12-16 14:32:12,578 | INFO     | pid: 29115
[2025-12-16 09:32:56] 2025-12-16 14:32:12,578 | INFO     | pgrp: 29115
[2025-12-16 09:32:56] 2025-12-16 14:32:12,578 | INFO     | corecount: 8
[2025-12-16 09:32:56] 2025-12-16 14:32:12,578 | INFO     | event service: False
[2025-12-16 09:32:56] 2025-12-16 14:32:12,578 | INFO     | sizes: {0: 2283822, 1: 2284021, 6: 2284283, 11: 2284311, 7268: 2311584, 7269: 2320582, 7270: 2320794, 7277: 2320988}
[2025-12-16 09:32:56] 2025-12-16 14:32:12,578 | INFO     | --------------------------------------------------
[2025-12-16 09:32:56] 2025-12-16 14:32:12,579 | INFO     | 
[2025-12-16 09:32:56] 2025-12-16 14:32:12,579 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-16 09:32:56] 2025-12-16 14:32:12,608 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 09:32:56] 2025-12-16 14:32:12,609 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 09:32:56] 2025-12-16 14:32:12,609 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 09:32:56] 2025-12-16 14:32:12,609 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 09:32:56] 2025-12-16 14:32:12,609 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 09:32:56] 2025-12-16 14:32:12,609 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 09:32:56] 2025-12-16 14:32:12,609 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 09:32:56] 2025-12-16 14:32:12,610 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 09:32:56] 2025-12-16 14:32:12,610 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 09:32:56] 2025-12-16 14:32:12,610 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 09:32:56] 2025-12-16 14:32:12,610 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 09:32:56] 2025-12-16 14:32:12,610 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 09:32:56] 2025-12-16 14:32:12,611 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 09:32:56] 2025-12-16 14:32:12,611 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 09:32:56] 2025-12-16 14:32:12,611 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 09:32:56] 2025-12-16 14:32:12,611 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 09:32:56] 2025-12-16 14:32:12,611 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 09:32:56] 2025-12-16 14:32:12,611 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 09:32:56] 2025-12-16 14:32:12,612 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 09:32:56] 2025-12-16 14:32:12,612 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 09:32:56] 2025-12-16 14:32:12,612 | INFO     | job 6930761417 has completed (purged errors)
[2025-12-16 09:32:56] 2025-12-16 14:32:12,612 | INFO     | overall cleanup function is called
[2025-12-16 09:32:56] 2025-12-16 14:32:13,618 | INFO     | --- collectZombieJob: --- 10, [29115]
[2025-12-16 09:32:56] 2025-12-16 14:32:13,618 | INFO     | zombie collector waiting for pid 29115
[2025-12-16 09:32:56] 2025-12-16 14:32:13,619 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 09:32:56] 2025-12-16 14:32:13,619 | INFO     | collected zombie processes
[2025-12-16 09:32:56] 2025-12-16 14:32:13,619 | INFO     | will attempt to kill all subprocesses of pid=29115
[2025-12-16 09:32:56] 2025-12-16 14:32:13,700 | INFO     | process IDs to be killed: [29115] (in reverse order)
[2025-12-16 09:32:56] 2025-12-16 14:32:13,758 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 09:32:56] 2025-12-16 14:32:13,759 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 09:32:56] 2025-12-16 14:32:13,763 | INFO     | did not find any defunct processes belonging to 29115
[2025-12-16 09:32:56] 2025-12-16 14:32:13,766 | INFO     | did not find any defunct processes belonging to 29115
[2025-12-16 09:32:56] 2025-12-16 14:32:13,766 | INFO     | ready for new job
[2025-12-16 09:32:56] 2025-12-16 14:32:13,766 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 09:32:56] 2025-12-16 14:32:13,768 | INFO     | ***************************************
[2025-12-16 09:32:56] 2025-12-16 14:32:13,768 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 09:32:56] 2025-12-16 14:32:13,768 | INFO     | ***************************************
[2025-12-16 09:32:56] 2025-12-16 14:32:13,768 | INFO     | 
[2025-12-16 09:32:56] 2025-12-16 14:32:13,769 | INFO     | architecture information:
[2025-12-16 09:32:56] 2025-12-16 14:32:13,769 | INFO     | executing command: cat /etc/os-release
[2025-12-16 09:32:56] 2025-12-16 14:32:13,787 | INFO     | cat /etc/os-release:
[2025-12-16 09:32:56] NAME="CentOS Linux"
[2025-12-16 09:32:56] VERSION="7 (Core)"
[2025-12-16 09:32:56] ID="centos"
[2025-12-16 09:32:56] ID_LIKE="rhel fedora"
[2025-12-16 09:32:56] VERSION_ID="7"
[2025-12-16 09:32:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 09:32:56] ANSI_COLOR="0;31"
[2025-12-16 09:32:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 09:32:56] HOME_URL="https://www.centos.org/"
[2025-12-16 09:32:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 09:32:56] 
[2025-12-16 09:32:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 09:32:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 09:32:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 09:32:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 09:32:56] 
[2025-12-16 09:32:56] 2025-12-16 14:32:13,787 | INFO     | ***************************************
[2025-12-16 09:32:56] 2025-12-16 14:32:14,291 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-16 09:32:56] 2025-12-16 14:32:14,310 | INFO     | sufficient remaining disk space (18680381440 B)
[2025-12-16 09:32:56] 2025-12-16 14:32:14,311 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 09:32:56] 2025-12-16 14:32:14,311 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 09:32:56] 2025-12-16 14:32:14,311 | INFO     | update_server=False
[2025-12-16 09:32:56] 2025-12-16 14:32:14,311 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 09:32:56] 2025-12-16 14:32:14,312 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 09:32:56] 2025-12-16 14:32:14,492 | INFO     | all job control threads have been joined
[2025-12-16 09:32:56] 2025-12-16 14:32:14,585 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-16 09:32:56] 2025-12-16 14:32:14,585 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-16 09:32:56] 2025-12-16 14:32:14,586 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 09:32:56] 2025-12-16 14:32:14,586 | INFO     | will abort loop
[2025-12-16 09:32:56] 2025-12-16 14:32:14,947 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 09:32:56] 2025-12-16 14:32:15,316 | INFO     | [job] retrieve thread has finished
[2025-12-16 09:32:56] 2025-12-16 14:32:15,317 | INFO     | [job] queue monitor thread has finished
[2025-12-16 09:32:56] 2025-12-16 14:32:15,318 | INFO     | all payload control threads have been joined
[2025-12-16 09:32:56] 2025-12-16 14:32:15,386 | INFO     | all data control threads have been joined
[2025-12-16 09:32:56] 2025-12-16 14:32:15,495 | INFO     | [job] control thread has finished
[2025-12-16 09:32:56] 2025-12-16 14:32:15,591 | INFO     | [job] job monitor thread has finished
[2025-12-16 09:32:56] 2025-12-16 14:32:15,624 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 09:32:56] 2025-12-16 14:32:15,763 | INFO     | [payload] validate_post thread has finished
[2025-12-16 09:32:56] 2025-12-16 14:32:16,030 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 09:32:56] 2025-12-16 14:32:16,056 | INFO     | [data] copytool_in thread has finished
[2025-12-16 09:32:56] 2025-12-16 14:32:16,205 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 09:32:56] 2025-12-16 14:32:16,324 | INFO     | [payload] control thread has finished
[2025-12-16 09:32:56] 2025-12-16 14:32:16,360 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 09:32:56] 2025-12-16 14:32:16,362 | INFO     | [job] validate thread has finished
[2025-12-16 09:32:56] 2025-12-16 14:32:16,391 | INFO     | [data] control thread has finished
[2025-12-16 09:32:56] 2025-12-16 14:32:16,453 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 09:32:56] 2025-12-16 14:32:16,913 | INFO     | [payload] failed_post thread has finished
[2025-12-16 09:32:56] 2025-12-16 14:32:16,948 | INFO     | [data] copytool_out thread has finished
[2025-12-16 09:32:56] 2025-12-16 14:32:20,036 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 09:32:56] 2025-12-16 14:32:43,916 | INFO     | PID=22695 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 09:32:56] 2025-12-16 14:32:43,917 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 09:32:56] 2025-12-16 14:32:43,917 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 09:32:56] 2025-12-16 14:32:43,917 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 09:32:56] 2025-12-16 14:32:49,961 | INFO     | [monitor] cgroup control has ended
[2025-12-16 09:32:56] 2025-12-16 14:32:50,650 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140352698296128)>', '<ExcThread(monitor, started 140351746602752)>']
[2025-12-16 09:32:56] 2025-12-16 14:32:50,952 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 09:32:56] 2025-12-16 14:32:50,953 | INFO     | [monitor] control thread has ended
[2025-12-16 09:32:56] 2025-12-16 14:32:55,676 | INFO     | all workflow threads have been joined
[2025-12-16 09:32:56] 2025-12-16 14:32:55,676 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 09:32:56] 2025-12-16 14:32:55,676 | INFO     | traces error code: 0
[2025-12-16 09:32:56] 2025-12-16 14:32:55,677 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 09:32:56] 2025-12-16 14:32:55,780 [wrapper] ==== pilot stdout END ====
[2025-12-16 09:32:56] 2025-12-16 14:32:55,785 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 09:32:56] 2025-12-16 14:32:55,789 [wrapper] pilotpid: 22695
[2025-12-16 09:32:56] 2025-12-16 14:32:55,793 [wrapper] Pilot exit status: 0
[2025-12-16 09:32:56] 2025-12-16 14:32:55,813 [wrapper] pandaids: 6930761417
[2025-12-16 09:32:56] 2025-12-16 14:32:55,865 [wrapper] cleanup supervisor_pilot 24553 22696
[2025-12-16 09:32:56] 2025-12-16 14:32:55,870 [wrapper] Test setup, not cleaning
[2025-12-16 09:32:56] 2025-12-16 14:32:55,875 [wrapper] apfmon messages muted
[2025-12-16 09:32:56] 2025-12-16 14:32:55,881 [wrapper] ==== wrapper stdout END ====
[2025-12-16 09:32:56] 2025-12-16 14:32:55,886 [wrapper] ==== wrapper stderr END ====
[2025-12-16 09:32:56]  *** Error codes and diagnostics ***
[2025-12-16 09:32:56]     "exeErrorCode": 0,
[2025-12-16 09:32:56]     "exeErrorDiag": "",
[2025-12-16 09:32:56]     "pilotErrorCode": 0,
[2025-12-16 09:32:56]     "pilotErrorDiag": "",
[2025-12-16 09:32:56]  *** Listing of results directory ***
[2025-12-16 09:32:56] total 338308
[2025-12-16 09:32:56] -rw-r--r-- 1 boincer umatlas    579449 Dec 16 01:04 pilot3.tar.gz
[2025-12-16 09:32:56] -rwx------ 1 boincer umatlas     36322 Dec 16 01:08 runpilot2-wrapper.sh
[2025-12-16 09:32:56] -rw-r--r-- 1 boincer umatlas      5112 Dec 16 01:11 queuedata.json
[2025-12-16 09:32:56] -rw-r--r-- 1 boincer umatlas       100 Dec 16 07:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 09:32:56] -rwxr-xr-x 1 boincer umatlas      7986 Dec 16 07:30 run_atlas
[2025-12-16 09:32:56] -rw-r--r-- 1 boincer umatlas       105 Dec 16 07:30 job.xml
[2025-12-16 09:32:56] -rw-r--r-- 2 boincer umatlas 190196480 Dec 16 07:30 EVNT.47886829._000512.pool.root.1
[2025-12-16 09:32:56] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 07:30 start_atlas.sh
[2025-12-16 09:32:56] drwxrwx--x 2 boincer umatlas      4096 Dec 16 07:30 shared
[2025-12-16 09:32:56] -rw-r--r-- 2 boincer umatlas    592416 Dec 16 07:30 input.tar.gz
[2025-12-16 09:32:56] -rw-r--r-- 1 boincer umatlas         0 Dec 16 07:30 boinc_lockfile
[2025-12-16 09:32:56] -rw-r--r-- 1 boincer umatlas      2539 Dec 16 07:30 pandaJob.out
[2025-12-16 09:32:56] -rw------- 1 boincer umatlas        57 Dec 16 07:30 setup.sh.local
[2025-12-16 09:32:56] -rw------- 1 boincer umatlas    990993 Dec 16 07:30 agis_schedconf.cvmfs.json
[2025-12-16 09:32:56] -rw------- 1 boincer umatlas   1516240 Dec 16 07:30 agis_ddmendpoints.agis.ALL.json
[2025-12-16 09:32:56] drwx------ 5 boincer umatlas      4096 Dec 16 07:30 pilot3
[2025-12-16 09:32:56] -rw-r--r-- 1 boincer umatlas      5909 Dec 16 09:31 init_data.xml
[2025-12-16 09:32:56] -rw-r--r-- 1 boincer umatlas       529 Dec 16 09:31 boinc_task_state.xml
[2025-12-16 09:32:56] -rw------- 1 boincer umatlas 149529764 Dec 16 09:31 HITS.47886831._012481.pool.root.1
[2025-12-16 09:32:56] -rw------- 1 boincer umatlas      1047 Dec 16 09:32 memory_monitor_summary.json
[2025-12-16 09:32:56] -rw------- 1 boincer umatlas    364351 Dec 16 09:32 log.47886831._012481.job.log.tgz.1
[2025-12-16 09:32:56] -rw------- 1 boincer umatlas      7841 Dec 16 09:32 heartbeat.json
[2025-12-16 09:32:56] -rw------- 1 boincer umatlas        95 Dec 16 09:32 pilot_heartbeat.json
[2025-12-16 09:32:56] -rw-r--r-- 1 boincer umatlas      8192 Dec 16 09:32 boinc_mmap_file
[2025-12-16 09:32:56] -rw-r--r-- 1 boincer umatlas        27 Dec 16 09:32 wrapper_checkpoint.txt
[2025-12-16 09:32:56] -rw------- 1 boincer umatlas      4932 Dec 16 09:32 pilotlog.txt
[2025-12-16 09:32:56] -rw------- 1 boincer umatlas   1028297 Dec 16 09:32 log.47886831._012481.job.log.1
[2025-12-16 09:32:56] -rw------- 1 boincer umatlas       357 Dec 16 09:32 output.list
[2025-12-16 09:32:56] -rw-r--r-- 1 boincer umatlas       620 Dec 16 09:32 runtime_log
[2025-12-16 09:32:56] -rw------- 1 boincer umatlas   1413120 Dec 16 09:32 result.tar.gz
[2025-12-16 09:32:56] -rw-r--r-- 1 boincer umatlas      9337 Dec 16 09:32 runtime_log.err
[2025-12-16 09:32:56] -rw------- 1 boincer umatlas       658 Dec 16 09:32 JzoLDmRPdp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3fZKDmA5bvWm.diag
[2025-12-16 09:32:56] -rw-r--r-- 1 boincer umatlas     21415 Dec 16 09:32 stderr.txt
[2025-12-16 09:32:56] HITS file was successfully produced:
[2025-12-16 09:32:56] -rw------- 1 boincer umatlas 149529764 Dec 16 09:31 shared/HITS.pool.root.1
[2025-12-16 09:32:56]  *** Contents of shared directory: ***
[2025-12-16 09:32:56] total 333748
[2025-12-16 09:32:56] -rw-r--r-- 2 boincer umatlas 190196480 Dec 16 07:30 ATLAS.root_0
[2025-12-16 09:32:56] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 07:30 start_atlas.sh
[2025-12-16 09:32:56] -rw-r--r-- 2 boincer umatlas    592416 Dec 16 07:30 input.tar.gz
[2025-12-16 09:32:56] -rw------- 1 boincer umatlas 149529764 Dec 16 09:31 HITS.pool.root.1
[2025-12-16 09:32:56] -rw------- 1 boincer umatlas   1413120 Dec 16 09:32 result.tar.gz
09:32:57 (19021): run_atlas exited; CPU time 54669.681853
09:32:57 (19021): called boinc_finish(0)

</stderr_txt>
]]>

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