Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:28:03 (812311): wrapper (7.7.26015): starting
10:28:03 (812311): wrapper: running run_atlas (--nthreads 3)
[2025-12-17 10:28:03] Arguments: --nthreads 3
[2025-12-17 10:28:03] Threads: 3
[2025-12-17 10:28:03] Checking for CVMFS
[2025-12-17 10:28:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 10:28:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 10:28:03] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 10:28:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 10:28:03] 2.9.2.0 3520241 5570 85444 154106 1 56 13785480 36864000 0 130560 0 3925369 99.990 202733 18582 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-17 10:28:03] CVMFS is ok
[2025-12-17 10:28:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 10:28:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 10:28:03] Further information can be found at the LHC@home message board.
[2025-12-17 10:28:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 10:28:03] Checking for apptainer binary...
[2025-12-17 10:28:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 10:28:03] Running /usr/bin/apptainer --version
[2025-12-17 10:28:03] apptainer version 1.4.1-1.1
[2025-12-17 10:28:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 10:28:03] thA373
[2025-12-17 10:28:03] apptainer works
[2025-12-17 10:28:03] Set ATHENA_PROC_NUMBER=3
[2025-12-17 10:28:03] Set ATHENA_CORE_NUMBER=3
[2025-12-17 10:28:03] Starting ATLAS job with PandaID=6930759753
[2025-12-17 10:28:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 12:14:22]  *** The last 200 lines of the pilot log: ***
[2025-12-17 12:14:22] 2025-12-17 11:13:33,564 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 12:14:22] 2025-12-17 11:13:33,564 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 12:14:22] 2025-12-17 11:13:33,564 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 12:14:22] 2025-12-17 11:13:33,564 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 12:14:22] 2025-12-17 11:13:33,564 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 12:14:22] 2025-12-17 11:13:33,564 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 12:14:22] 2025-12-17 11:13:33,564 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 12:14:22] 2025-12-17 11:13:33,564 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 12:14:22] 2025-12-17 11:13:33,564 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 12:14:22] 2025-12-17 11:13:33,564 | INFO     | job 6930759753 has completed (purged errors)
[2025-12-17 12:14:22] 2025-12-17 11:13:33,564 | INFO     | overall cleanup function is called
[2025-12-17 12:14:22] 2025-12-17 11:13:34,571 | INFO     | --- collectZombieJob: --- 10, [822472]
[2025-12-17 12:14:22] 2025-12-17 11:13:34,571 | INFO     | zombie collector waiting for pid 822472
[2025-12-17 12:14:22] 2025-12-17 11:13:34,571 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 12:14:22] 2025-12-17 11:13:34,571 | INFO     | collected zombie processes
[2025-12-17 12:14:22] 2025-12-17 11:13:34,571 | INFO     | will attempt to kill all subprocesses of pid=822472
[2025-12-17 12:14:22] 2025-12-17 11:13:34,615 | INFO     | process IDs to be killed: [822472] (in reverse order)
[2025-12-17 12:14:22] 2025-12-17 11:13:34,639 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 12:14:22] 2025-12-17 11:13:34,639 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 12:14:22] 2025-12-17 11:13:34,640 | INFO     | did not find any defunct processes belonging to 822472
[2025-12-17 12:14:22] 2025-12-17 11:13:34,641 | INFO     | did not find any defunct processes belonging to 822472
[2025-12-17 12:14:22] 2025-12-17 11:13:34,641 | INFO     | ready for new job
[2025-12-17 12:14:22] 2025-12-17 11:13:34,641 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 12:14:22] 2025-12-17 11:13:34,642 | INFO     | ***************************************
[2025-12-17 12:14:22] 2025-12-17 11:13:34,642 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 12:14:22] 2025-12-17 11:13:34,642 | INFO     | ***************************************
[2025-12-17 12:14:22] 2025-12-17 11:13:34,642 | INFO     | 
[2025-12-17 12:14:22] 2025-12-17 11:13:34,643 | INFO     | architecture information:
[2025-12-17 12:14:22] 2025-12-17 11:13:34,643 | INFO     | executing command: cat /etc/os-release
[2025-12-17 12:14:22] 2025-12-17 11:13:34,651 | INFO     | cat /etc/os-release:
[2025-12-17 12:14:22] NAME="CentOS Linux"
[2025-12-17 12:14:22] VERSION="7 (Core)"
[2025-12-17 12:14:22] ID="centos"
[2025-12-17 12:14:22] ID_LIKE="rhel fedora"
[2025-12-17 12:14:22] VERSION_ID="7"
[2025-12-17 12:14:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 12:14:22] ANSI_COLOR="0;31"
[2025-12-17 12:14:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 12:14:22] HOME_URL="https://www.centos.org/"
[2025-12-17 12:14:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 12:14:22] 
[2025-12-17 12:14:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 12:14:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 12:14:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 12:14:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 12:14:22] 
[2025-12-17 12:14:22] 2025-12-17 11:13:34,651 | INFO     | ***************************************
[2025-12-17 12:14:22] 2025-12-17 11:13:35,154 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-17 12:14:22] 2025-12-17 11:13:35,167 | INFO     | sufficient remaining disk space (245729591296 B)
[2025-12-17 12:14:22] 2025-12-17 11:13:35,167 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 12:14:22] 2025-12-17 11:13:35,167 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 12:14:22] 2025-12-17 11:13:35,167 | INFO     | update_server=False
[2025-12-17 12:14:22] 2025-12-17 11:13:35,167 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 12:14:22] 2025-12-17 11:13:35,167 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 12:14:22] 2025-12-17 11:13:35,168 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 12:14:22] 2025-12-17 11:13:35,225 | INFO     | all data control threads have been joined
[2025-12-17 12:14:22] 2025-12-17 11:13:35,243 | INFO     | all job control threads have been joined
[2025-12-17 12:14:22] 2025-12-17 11:13:35,758 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 12:14:22] 2025-12-17 11:13:36,030 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 12:14:22] 2025-12-17 11:13:36,031 | INFO     | aborting loop
[2025-12-17 12:14:22] 2025-12-17 11:13:36,168 | INFO     | [job] queue monitor thread has finished
[2025-12-17 12:14:22] 2025-12-17 11:13:36,173 | INFO     | [job] retrieve thread has finished
[2025-12-17 12:14:22] 2025-12-17 11:13:36,230 | INFO     | [data] control thread has finished
[2025-12-17 12:14:22] 2025-12-17 11:13:36,248 | INFO     | [job] control thread has finished
[2025-12-17 12:14:22] 2025-12-17 11:13:36,475 | INFO     | [payload] validate_post thread has finished
[2025-12-17 12:14:22] 2025-12-17 11:13:36,601 | INFO     | all payload control threads have been joined
[2025-12-17 12:14:22] 2025-12-17 11:13:36,853 | INFO     | [payload] failed_post thread has finished
[2025-12-17 12:14:22] 2025-12-17 11:13:36,876 | INFO     | [data] copytool_in thread has finished
[2025-12-17 12:14:22] 2025-12-17 11:13:37,036 | INFO     | [job] job monitor thread has finished
[2025-12-17 12:14:22] 2025-12-17 11:13:37,381 | INFO     | [job] validate thread has finished
[2025-12-17 12:14:22] 2025-12-17 11:13:37,446 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 12:14:22] 2025-12-17 11:13:37,519 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 12:14:22] 2025-12-17 11:13:37,525 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 12:14:22] 2025-12-17 11:13:37,607 | INFO     | [payload] control thread has finished
[2025-12-17 12:14:22] 2025-12-17 11:13:37,764 | INFO     | [data] copytool_out thread has finished
[2025-12-17 12:14:22] 2025-12-17 11:13:39,175 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 12:14:22] 2025-12-17 11:13:46,122 | INFO     | job.realtimelogging is not enabled
[2025-12-17 12:14:22] 2025-12-17 11:13:47,128 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 12:14:22] 2025-12-17 11:14:05,115 | INFO     | PID=816030 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-17 12:14:22] 2025-12-17 11:14:05,115 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 12:14:22] 2025-12-17 11:14:05,115 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 12:14:22] 2025-12-17 11:14:05,115 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 12:14:22] 2025-12-17 11:14:16,315 | INFO     | [monitor] cgroup control has ended
[2025-12-17 12:14:22] 2025-12-17 11:14:17,690 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140702723454784)>', '<ExcThread(monitor, started 140702105196288)>']
[2025-12-17 12:14:22] 2025-12-17 11:14:18,185 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 12:14:22] 2025-12-17 11:14:18,185 | INFO     | [monitor] control thread has ended
[2025-12-17 12:14:22] 2025-12-17 11:14:22,715 | INFO     | all workflow threads have been joined
[2025-12-17 12:14:22] 2025-12-17 11:14:22,716 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 12:14:22] 2025-12-17 11:14:22,716 | INFO     | traces error code: 0
[2025-12-17 12:14:22] 2025-12-17 11:14:22,716 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 12:14:22] 2025-12-17 11:14:22,764 [wrapper] ==== pilot stdout END ====
[2025-12-17 12:14:22] 2025-12-17 11:14:22,767 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 12:14:22] 2025-12-17 11:14:22,769 [wrapper] pilotpid: 816030
[2025-12-17 12:14:22] 2025-12-17 11:14:22,771 [wrapper] Pilot exit status: 0
[2025-12-17 12:14:22] 2025-12-17 11:14:22,779 [wrapper] pandaids: 6930759753
[2025-12-17 12:14:22] 2025-12-17 11:14:22,795 [wrapper] cleanup supervisor_pilot  837164 816031
[2025-12-17 12:14:22] 2025-12-17 11:14:22,798 [wrapper] Test setup, not cleaning
[2025-12-17 12:14:22] 2025-12-17 11:14:22,800 [wrapper] apfmon messages muted
[2025-12-17 12:14:22] 2025-12-17 11:14:22,803 [wrapper] ==== wrapper stdout END ====
[2025-12-17 12:14:22] 2025-12-17 11:14:22,805 [wrapper] ==== wrapper stderr END ====
[2025-12-17 12:14:22]  *** Error codes and diagnostics ***
[2025-12-17 12:14:22]     "exeErrorCode": 0,
[2025-12-17 12:14:22]     "exeErrorDiag": "",
[2025-12-17 12:14:22]     "pilotErrorCode": 0,
[2025-12-17 12:14:22]     "pilotErrorDiag": "",
[2025-12-17 12:14:22]  *** Listing of results directory ***
[2025-12-17 12:14:22] total 400540
[2025-12-17 12:14:22] -rw-r--r-- 1 boinc boinc    579449 Dec 16 07:04 pilot3.tar.gz
[2025-12-17 12:14:22] -rwx------ 1 boinc boinc     36322 Dec 16 07:07 runpilot2-wrapper.sh
[2025-12-17 12:14:22] -rw-r--r-- 1 boinc boinc      5112 Dec 16 07:09 queuedata.json
[2025-12-17 12:14:22] -rw-r--r-- 1 boinc boinc       100 Dec 17 10:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 12:14:22] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 10:28 run_atlas
[2025-12-17 12:14:22] -rw-r--r-- 1 boinc boinc       105 Dec 17 10:28 job.xml
[2025-12-17 12:14:22] -rw-r--r-- 2 boinc boinc 212177960 Dec 17 10:28 EVNT.47898779._000190.pool.root.1
[2025-12-17 12:14:22] drwxrwx--x 2 boinc boinc      4096 Dec 17 10:28 shared
[2025-12-17 12:14:22] -rw-r--r-- 2 boinc boinc    592399 Dec 17 10:28 input.tar.gz
[2025-12-17 12:14:22] -rw-r--r-- 2 boinc boinc     15847 Dec 17 10:28 start_atlas.sh
[2025-12-17 12:14:22] -rw-r--r-- 1 boinc boinc         0 Dec 17 10:28 boinc_setup_complete
[2025-12-17 12:14:22] -rw-r--r-- 1 boinc boinc      6439 Dec 17 10:28 init_data.xml
[2025-12-17 12:14:22] -rw-r--r-- 1 boinc boinc         0 Dec 17 10:28 boinc_lockfile
[2025-12-17 12:14:22] -rw-r--r-- 1 boinc boinc      2523 Dec 17 10:28 pandaJob.out
[2025-12-17 12:14:22] -rw------- 1 boinc boinc    987431 Dec 17 10:28 agis_schedconf.cvmfs.json
[2025-12-17 12:14:22] -rw------- 1 boinc boinc   1516240 Dec 17 10:28 agis_ddmendpoints.agis.ALL.json
[2025-12-17 12:14:22] drwx------ 5 boinc boinc      4096 Dec 17 10:28 pilot3
[2025-12-17 12:14:22] -rw------- 1 boinc boinc 191699812 Dec 17 12:13 HITS.47898782._004665.pool.root.1
[2025-12-17 12:14:22] -rw-r--r-- 1 boinc boinc       529 Dec 17 12:13 boinc_task_state.xml
[2025-12-17 12:14:22] -rw------- 1 boinc boinc      1016 Dec 17 12:13 memory_monitor_summary.json
[2025-12-17 12:14:22] -rw------- 1 boinc boinc    269653 Dec 17 12:13 log.47898782._004665.job.log.tgz.1
[2025-12-17 12:14:22] -rw------- 1 boinc boinc      7754 Dec 17 12:13 heartbeat.json
[2025-12-17 12:14:22] -rw-r--r-- 1 boinc boinc      8192 Dec 17 12:14 boinc_mmap_file
[2025-12-17 12:14:22] -rw-r--r-- 1 boinc boinc        27 Dec 17 12:14 wrapper_checkpoint.txt
[2025-12-17 12:14:22] -rw------- 1 boinc boinc        95 Dec 17 12:14 pilot_heartbeat.json
[2025-12-17 12:14:22] -rw------- 1 boinc boinc      4823 Dec 17 12:14 pilotlog.txt
[2025-12-17 12:14:22] -rw------- 1 boinc boinc    916567 Dec 17 12:14 log.47898782._004665.job.log.1
[2025-12-17 12:14:22] -rw------- 1 boinc boinc       357 Dec 17 12:14 output.list
[2025-12-17 12:14:22] -rw-r--r-- 1 boinc boinc       620 Dec 17 12:14 runtime_log
[2025-12-17 12:14:22] -rw------- 1 boinc boinc   1208320 Dec 17 12:14 result.tar.gz
[2025-12-17 12:14:22] -rw-r--r-- 1 boinc boinc      8897 Dec 17 12:14 runtime_log.err
[2025-12-17 12:14:22] -rw------- 1 boinc boinc       659 Dec 17 12:14 1puMDmeOdp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7dZKDmh8CUon.diag
[2025-12-17 12:14:22] -rw-r--r-- 1 boinc boinc     11810 Dec 17 12:14 stderr.txt
[2025-12-17 12:14:22] HITS file was successfully produced:
[2025-12-17 12:14:22] -rw------- 1 boinc boinc 191699812 Dec 17 12:13 shared/HITS.pool.root.1
[2025-12-17 12:14:22]  *** Contents of shared directory: ***
[2025-12-17 12:14:22] total 396200
[2025-12-17 12:14:22] -rw-r--r-- 2 boinc boinc 212177960 Dec 17 10:28 ATLAS.root_0
[2025-12-17 12:14:22] -rw-r--r-- 2 boinc boinc    592399 Dec 17 10:28 input.tar.gz
[2025-12-17 12:14:22] -rw-r--r-- 2 boinc boinc     15847 Dec 17 10:28 start_atlas.sh
[2025-12-17 12:14:22] -rw------- 1 boinc boinc 191699812 Dec 17 12:13 HITS.pool.root.1
[2025-12-17 12:14:22] -rw------- 1 boinc boinc   1208320 Dec 17 12:14 result.tar.gz
12:14:24 (812311): run_atlas exited; CPU time 18292.804139
12:14:24 (812311): called boinc_finish(0)

</stderr_txt>
]]>

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