Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:22:30 (2899): wrapper (7.7.26015): starting
17:22:30 (2899): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 17:22:30] Arguments: --nthreads 8
[2025-12-16 17:22:30] Threads: 8
[2025-12-16 17:22:30] Checking for CVMFS
[2025-12-16 17:22:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 17:22:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 17:22:32] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 17:22:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 17:22:33] 2.11.2.0 22837 1090 62896 154077 3 253 25062177 25165825 4699 130560 0 949948 99.891 353828 2056 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-16 17:22:33] CVMFS is ok
[2025-12-16 17:22:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 17:22:33] Checking for apptainer binary...
[2025-12-16 17:22:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 17:22:33] Running /usr/bin/apptainer --version
[2025-12-16 17:22:33] apptainer version 1.3.2-1.el7
[2025-12-16 17:22:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 17:22:44] cg-vwn396.simple-grid.lan
[2025-12-16 17:22:44] apptainer works
[2025-12-16 17:22:45] Set ATHENA_PROC_NUMBER=8
[2025-12-16 17:22:45] Set ATHENA_CORE_NUMBER=8
[2025-12-16 17:22:45] Starting ATLAS job with PandaID=6930760630
[2025-12-16 17:22:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 23:12:56]  *** The last 200 lines of the pilot log: ***
[2025-12-16 23:12:56] 2025-12-16 22:12:05,468 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 23:12:56] 2025-12-16 22:12:06,315 | INFO     | time since job start (20755s) is within the limit (174528.0s)
[2025-12-16 23:12:56] 2025-12-16 22:12:07,978 | INFO     | monitor loop #1465: job 0:6930760630 is in state 'finished'
[2025-12-16 23:12:56] 2025-12-16 22:12:07,978 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 23:12:56] 2025-12-16 22:12:08,322 | INFO     | time since job start (20757s) is within the limit (174528.0s)
[2025-12-16 23:12:56] 2025-12-16 22:12:09,508 | INFO     | PID=6698 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-16 23:12:56] 2025-12-16 22:12:09,509 | INFO     | .. there are 9 such processes running
[2025-12-16 23:12:56] 2025-12-16 22:12:10,163 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-16 23:12:56] 2025-12-16 22:12:10,164 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-16 23:12:56] 2025-12-16 22:12:10,166 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6930760630/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 23:12:56] 2025-12-16 22:12:10,167 | INFO     | extracted standard info from prmon json
[2025-12-16 23:12:56] 2025-12-16 22:12:10,167 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 23:12:56] 2025-12-16 22:12:10,167 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 23:12:56] 2025-12-16 22:12:10,167 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 23:12:56] 2025-12-16 22:12:10,167 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 23:12:56] 2025-12-16 22:12:10,177 | INFO     | fitting pss+swap vs Time
[2025-12-16 23:12:56] 2025-12-16 22:12:10,177 | INFO     | sum of square deviations: 11347200663.0
[2025-12-16 23:12:56] 2025-12-16 22:12:10,181 | INFO     | sum of deviations: 121251709431.49998
[2025-12-16 23:12:56] 2025-12-16 22:12:10,181 | INFO     | mean x: 1765912909.5
[2025-12-16 23:12:56] 2025-12-16 22:12:10,182 | INFO     | mean y: 2455081.936746988
[2025-12-16 23:12:56] 2025-12-16 22:12:10,182 | INFO     | intersect: -18867393556.786377
[2025-12-16 23:12:56] 2025-12-16 22:12:10,182 | INFO     | chi2: 4.410015311615524
[2025-12-16 23:12:56] 2025-12-16 22:12:10,183 | INFO     | sum of square deviations: 10842205148.0
[2025-12-16 23:12:56] 2025-12-16 22:12:10,187 | INFO     | sum of deviations: 141057728580.0
[2025-12-16 23:12:56] 2025-12-16 22:12:10,187 | INFO     | mean x: 1765912757.0
[2025-12-16 23:12:56] 2025-12-16 22:12:10,187 | INFO     | mean y: 2460981.770642202
[2025-12-16 23:12:56] 2025-12-16 22:12:10,187 | INFO     | intersect: -22972168161.71266
[2025-12-16 23:12:56] 2025-12-16 22:12:10,188 | INFO     | chi2: 3.652273167216
[2025-12-16 23:12:56] 2025-12-16 22:12:10,188 | INFO     | current chi2=3.652273167216 (change=17.182301893685263 %)
[2025-12-16 23:12:56] 2025-12-16 22:12:10,188 | INFO     | right removable region: 326
[2025-12-16 23:12:56] 2025-12-16 22:12:10,189 | INFO     | sum of square deviations: 10842205148.0
[2025-12-16 23:12:56] 2025-12-16 22:12:10,192 | INFO     | sum of deviations: 21502558193.99999
[2025-12-16 23:12:56] 2025-12-16 22:12:10,198 | INFO     | mean x: 1765913062.0
[2025-12-16 23:12:56] 2025-12-16 22:12:10,198 | INFO     | mean y: 2485149.409785933
[2025-12-16 23:12:56] 2025-12-16 22:12:10,198 | INFO     | intersect: -3499721999.677789
[2025-12-16 23:12:56] 2025-12-16 22:12:10,199 | INFO     | chi2: 0.9247109484159007
[2025-12-16 23:12:56] 2025-12-16 22:12:10,199 | INFO     | current chi2=0.9247109484159007 (change=79.0315705711881 %)
[2025-12-16 23:12:56] 2025-12-16 22:12:10,200 | INFO     | sum of square deviations: 10352419220.5
[2025-12-16 23:12:56] 2025-12-16 22:12:10,203 | INFO     | sum of deviations: 8198998501.500011
[2025-12-16 23:12:56] 2025-12-16 22:12:10,204 | INFO     | mean x: 1765913214.5
[2025-12-16 23:12:56] 2025-12-16 22:12:10,204 | INFO     | mean y: 2489282.313664596
[2025-12-16 23:12:56] 2025-12-16 22:12:10,204 | INFO     | intersect: -1396093936.8428404
[2025-12-16 23:12:56] 2025-12-16 22:12:10,205 | INFO     | chi2: 0.8512046769760413
[2025-12-16 23:12:56] 2025-12-16 22:12:10,205 | INFO     | current chi2=0.8512046769760413 (change=7.949107941868884 %)
[2025-12-16 23:12:56] 2025-12-16 22:12:10,205 | INFO     | left removable region: 20
[2025-12-16 23:12:56] 2025-12-16 22:12:10,205 | INFO     | sum of square deviations: 8884603792.5
[2025-12-16 23:12:56] 2025-12-16 22:12:10,209 | INFO     | sum of deviations: 13215541938.5
[2025-12-16 23:12:56] 2025-12-16 22:12:10,209 | INFO     | mean x: 1765913336.5
[2025-12-16 23:12:56] 2025-12-16 22:12:10,209 | INFO     | mean y: 2501116.5
[2025-12-16 23:12:56] 2025-12-16 22:12:10,209 | INFO     | intersect: -2624234110.3395724
[2025-12-16 23:12:56] 2025-12-16 22:12:10,210 | INFO     | chi2: 0.0035641948734818746
[2025-12-16 23:12:56] 2025-12-16 22:12:10,210 | INFO     | current memory leak: 1.49 B/s (using 306 data points, chi2=0.00)
[2025-12-16 23:12:56] 2025-12-16 22:12:10,211 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2025-12-16 23:12:56] 2025-12-16 22:12:10,211 | INFO     | ..............................
[2025-12-16 23:12:56] 2025-12-16 22:12:10,211 | INFO     | . Timing measurements:
[2025-12-16 23:12:56] 2025-12-16 22:12:10,211 | INFO     | . get job = 0 s
[2025-12-16 23:12:56] 2025-12-16 22:12:10,211 | INFO     | . initial setup = 6 s
[2025-12-16 23:12:56] 2025-12-16 22:12:10,211 | INFO     | . payload setup = 122 s
[2025-12-16 23:12:56] 2025-12-16 22:12:10,211 | INFO     | . stage-in = 0 s
[2025-12-16 23:12:56] 2025-12-16 22:12:10,212 | INFO     | . payload execution = 20358 s
[2025-12-16 23:12:56] 2025-12-16 22:12:10,212 | INFO     | . stage-out = 4 s
[2025-12-16 23:12:56] 2025-12-16 22:12:10,212 | INFO     | . log creation = 1 s
[2025-12-16 23:12:56] 2025-12-16 22:12:10,212 | INFO     | ..............................
[2025-12-16 23:12:56] 2025-12-16 22:12:10,367 | INFO     | 
[2025-12-16 23:12:56] 2025-12-16 22:12:10,368 | INFO     | job summary report
[2025-12-16 23:12:56] 2025-12-16 22:12:10,368 | INFO     | --------------------------------------------------
[2025-12-16 23:12:56] 2025-12-16 22:12:10,368 | INFO     | PanDA job id: 6930760630
[2025-12-16 23:12:56] 2025-12-16 22:12:10,368 | INFO     | task id: 47898782
[2025-12-16 23:12:56] 2025-12-16 22:12:10,368 | INFO     | errors: (none)
[2025-12-16 23:12:56] 2025-12-16 22:12:10,368 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 23:12:56] 2025-12-16 22:12:10,368 | INFO     | pilot state: finished 
[2025-12-16 23:12:56] 2025-12-16 22:12:10,368 | INFO     | transexitcode: 0
[2025-12-16 23:12:56] 2025-12-16 22:12:10,369 | INFO     | exeerrorcode: 0
[2025-12-16 23:12:56] 2025-12-16 22:12:10,369 | INFO     | exeerrordiag: 
[2025-12-16 23:12:56] 2025-12-16 22:12:10,369 | INFO     | exitcode: 0
[2025-12-16 23:12:56] 2025-12-16 22:12:10,369 | INFO     | exitmsg: OK
[2025-12-16 23:12:56] 2025-12-16 22:12:10,369 | INFO     | cpuconsumptiontime: 78434 s
[2025-12-16 23:12:56] 2025-12-16 22:12:10,369 | INFO     | nevents: 400
[2025-12-16 23:12:56] 2025-12-16 22:12:10,369 | INFO     | neventsw: 0
[2025-12-16 23:12:56] 2025-12-16 22:12:10,369 | INFO     | pid: 13264
[2025-12-16 23:12:56] 2025-12-16 22:12:10,369 | INFO     | pgrp: 13264
[2025-12-16 23:12:56] 2025-12-16 22:12:10,369 | INFO     | corecount: 8
[2025-12-16 23:12:56] 2025-12-16 22:12:10,370 | INFO     | event service: False
[2025-12-16 23:12:56] 2025-12-16 22:12:10,370 | INFO     | sizes: {0: 2283753, 1: 2284008, 2: 2284036, 12: 2284036, 23: 2284064, 34: 2284092, 45: 2284248, 55: 2284276, 66: 2284304, 77: 2284332, 86: 2284650, 88: 2284958, 20
[2025-12-16 23:12:56] 2025-12-16 22:12:10,370 | INFO     | --------------------------------------------------
[2025-12-16 23:12:56] 2025-12-16 22:12:10,370 | INFO     | 
[2025-12-16 23:12:56] 2025-12-16 22:12:10,370 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-12-16 23:12:56] 2025-12-16 22:12:10,511 | INFO     | time since job start (20759s) is within the limit (174528.0s)
[2025-12-16 23:12:56] 2025-12-16 22:12:10,892 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 23:12:56] 2025-12-16 22:12:10,892 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 23:12:56] 2025-12-16 22:12:10,893 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 23:12:56] 2025-12-16 22:12:10,893 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 23:12:56] 2025-12-16 22:12:10,893 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 23:12:56] 2025-12-16 22:12:10,893 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 23:12:56] 2025-12-16 22:12:10,893 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 23:12:56] 2025-12-16 22:12:10,893 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 23:12:56] 2025-12-16 22:12:10,893 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 23:12:56] 2025-12-16 22:12:10,893 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 23:12:56] 2025-12-16 22:12:10,893 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 23:12:56] 2025-12-16 22:12:10,894 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 23:12:56] 2025-12-16 22:12:10,894 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 23:12:56] 2025-12-16 22:12:10,894 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 23:12:56] 2025-12-16 22:12:10,894 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 23:12:56] 2025-12-16 22:12:10,894 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 23:12:56] 2025-12-16 22:12:10,894 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 23:12:56] 2025-12-16 22:12:10,894 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 23:12:56] 2025-12-16 22:12:10,894 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 23:12:56] 2025-12-16 22:12:10,894 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 23:12:56] 2025-12-16 22:12:10,895 | INFO     | job 6930760630 has completed (purged errors)
[2025-12-16 23:12:56] 2025-12-16 22:12:10,895 | INFO     | overall cleanup function is called
[2025-12-16 23:12:56] 2025-12-16 22:12:11,904 | INFO     | --- collectZombieJob: --- 10, [13264]
[2025-12-16 23:12:56] 2025-12-16 22:12:11,904 | INFO     | zombie collector waiting for pid 13264
[2025-12-16 23:12:56] 2025-12-16 22:12:11,904 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 23:12:56] 2025-12-16 22:12:11,904 | INFO     | collected zombie processes
[2025-12-16 23:12:56] 2025-12-16 22:12:11,904 | INFO     | will attempt to kill all subprocesses of pid=13264
[2025-12-16 23:12:56] 2025-12-16 22:12:12,029 | INFO     | process IDs to be killed: [13264] (in reverse order)
[2025-12-16 23:12:56] 2025-12-16 22:12:12,870 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 23:12:56] 2025-12-16 22:12:12,871 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 23:12:56] 2025-12-16 22:12:12,874 | INFO     | did not find any defunct processes belonging to 13264
[2025-12-16 23:12:56] 2025-12-16 22:12:12,877 | INFO     | did not find any defunct processes belonging to 13264
[2025-12-16 23:12:56] 2025-12-16 22:12:12,877 | INFO     | ready for new job
[2025-12-16 23:12:56] 2025-12-16 22:12:12,878 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 23:12:56] 2025-12-16 22:12:12,880 | INFO     | ***************************************
[2025-12-16 23:12:56] 2025-12-16 22:12:12,880 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 23:12:56] 2025-12-16 22:12:12,880 | INFO     | ***************************************
[2025-12-16 23:12:56] 2025-12-16 22:12:12,880 | INFO     | 
[2025-12-16 23:12:56] 2025-12-16 22:12:12,881 | INFO     | pilot is running in a VM
[2025-12-16 23:12:56] 2025-12-16 22:12:12,881 | INFO     | architecture information:
[2025-12-16 23:12:56] 2025-12-16 22:12:12,882 | INFO     | executing command: cat /etc/os-release
[2025-12-16 23:12:56] 2025-12-16 22:12:13,024 | INFO     | cat /etc/os-release:
[2025-12-16 23:12:56] NAME="CentOS Linux"
[2025-12-16 23:12:56] VERSION="7 (Core)"
[2025-12-16 23:12:56] ID="centos"
[2025-12-16 23:12:56] ID_LIKE="rhel fedora"
[2025-12-16 23:12:56] VERSION_ID="7"
[2025-12-16 23:12:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 23:12:56] ANSI_COLOR="0;31"
[2025-12-16 23:12:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 23:12:56] HOME_URL="https://www.centos.org/"
[2025-12-16 23:12:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 23:12:56] 
[2025-12-16 23:12:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 23:12:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 23:12:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 23:12:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 23:12:56] 
[2025-12-16 23:12:56] 2025-12-16 22:12:13,025 | INFO     | ***************************************
[2025-12-16 23:12:56] 2025-12-16 22:12:13,528 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-12-16 23:12:56] 2025-12-16 22:12:13,820 | INFO     | sufficient remaining disk space (495803432960 B)
[2025-12-16 23:12:56] 2025-12-16 22:12:13,821 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 23:12:56] 2025-12-16 22:12:13,821 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 23:12:56] 2025-12-16 22:12:13,821 | INFO     | update_server=False
[2025-12-16 23:12:56] 2025-12-16 22:12:13,821 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 23:12:56] 2025-12-16 22:12:13,902 | INFO     | all payload control threads have been joined
[2025-12-16 23:12:56] 2025-12-16 22:12:13,948 | INFO     | all job control threads have been joined
[2025-12-16 23:12:56] 2025-12-16 22:12:13,995 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 23:12:56] 2025-12-16 22:12:13,995 | INFO     | aborting loop
[2025-12-16 23:12:56] 2025-12-16 22:12:14,216 | INFO     | all data control threads have been joined
[2025-12-16 23:12:56] 2025-12-16 22:12:14,229 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 23:12:56] 2025-12-16 22:12:14,827 | INFO     | [job] retrieve thread has finished
[2025-12-16 23:12:56] 2025-12-16 22:12:14,884 | INFO     | [data] copytool_in thread has finished
[2025-12-16 23:12:56] 2025-12-16 22:12:14,908 | INFO     | [payload] control thread has finished
[2025-12-16 23:12:56] 2025-12-16 22:12:14,954 | INFO     | [job] control thread has finished
[2025-12-16 23:12:56] 2025-12-16 22:12:15,001 | INFO     | [job] job monitor thread has finished
[2025-12-16 23:12:56] 2025-12-16 22:12:15,011 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 23:12:56] 2025-12-16 22:12:15,222 | INFO     | [data] control thread has finished
[2025-12-16 23:12:56] 2025-12-16 22:12:15,277 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 23:12:56] 2025-12-16 22:12:15,290 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 23:12:56] 2025-12-16 22:12:15,366 | INFO     | [payload] validate_post thread has finished
[2025-12-16 23:12:56] 2025-12-16 22:12:15,382 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 23:12:56] 2025-12-16 22:12:15,662 | INFO     | [payload] failed_post thread has finished
[2025-12-16 23:12:56] 2025-12-16 22:12:15,736 | INFO     | [job] validate thread has finished
[2025-12-16 23:12:56] 2025-12-16 22:12:15,764 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 23:12:56] 2025-12-16 22:12:16,024 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 23:12:56] 2025-12-16 22:12:16,236 | INFO     | [data] copytool_out thread has finished
[2025-12-16 23:12:56] 2025-12-16 22:12:16,388 | INFO     | [job] queue monitor thread has finished
[2025-12-16 23:12:56] 2025-12-16 22:12:19,020 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 23:12:56] 2025-12-16 22:12:43,689 | INFO     | PID=6698 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-16 23:12:56] 2025-12-16 22:12:43,689 | INFO     | .. there are 9 such processes running
[2025-12-16 23:12:56] 2025-12-16 22:12:43,690 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 23:12:56] 2025-12-16 22:12:43,690 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 23:12:56] 2025-12-16 22:12:43,691 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 23:12:56] 2025-12-16 22:12:46,803 | INFO     | [monitor] cgroup control has ended
[2025-12-16 23:12:56] 2025-12-16 22:12:47,930 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140017752540992)>', '<ExcThread(monitor, started 140017292777216)>']
[2025-12-16 23:12:56] 2025-12-16 22:12:48,721 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 23:12:56] 2025-12-16 22:12:48,721 | INFO     | [monitor] control thread has ended
[2025-12-16 23:12:56] 2025-12-16 22:12:52,956 | INFO     | all workflow threads have been joined
[2025-12-16 23:12:56] 2025-12-16 22:12:52,956 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 23:12:56] 2025-12-16 22:12:52,956 | INFO     | traces error code: 0
[2025-12-16 23:12:56] 2025-12-16 22:12:52,957 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 23:12:56] 2025-12-16 22:12:53,323 [wrapper] ==== pilot stdout END ====
[2025-12-16 23:12:56] 2025-12-16 22:12:53,420 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 23:12:56] 2025-12-16 22:12:53,524 [wrapper] pilotpid: 6698
[2025-12-16 23:12:56] 2025-12-16 22:12:53,604 [wrapper] Pilot exit status: 0
[2025-12-16 23:12:56] 2025-12-16 22:12:53,964 [wrapper] pandaids: 6930760630
[2025-12-16 23:12:56] 2025-12-16 22:12:54,765 [wrapper] cleanup supervisor_pilot 17093 6699
[2025-12-16 23:12:56] 2025-12-16 22:12:54,865 [wrapper] Test setup, not cleaning
[2025-12-16 23:12:56] 2025-12-16 22:12:54,982 [wrapper] apfmon messages muted
[2025-12-16 23:12:56] 2025-12-16 22:12:55,103 [wrapper] ==== wrapper stdout END ====
[2025-12-16 23:12:56] 2025-12-16 22:12:55,214 [wrapper] ==== wrapper stderr END ====
[2025-12-16 23:12:56]  *** Error codes and diagnostics ***
[2025-12-16 23:12:56]     "exeErrorCode": 0,
[2025-12-16 23:12:56]     "exeErrorDiag": "",
[2025-12-16 23:12:56]     "pilotErrorCode": 0,
[2025-12-16 23:12:56]     "pilotErrorDiag": "",
[2025-12-16 23:12:56]  *** Listing of results directory ***
[2025-12-16 23:12:56] total 414880
[2025-12-16 23:12:56] -rw-r--r--. 1 boinc boinc    579449 Dec 16 07:04 pilot3.tar.gz
[2025-12-16 23:12:56] -rwx------. 1 boinc boinc     36322 Dec 16 07:07 runpilot2-wrapper.sh
[2025-12-16 23:12:56] -rw-r--r--. 1 boinc boinc      5112 Dec 16 07:09 queuedata.json
[2025-12-16 23:12:56] -rw-r--r--. 1 boinc boinc       100 Dec 16 17:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 23:12:56] -rwxr-xr-x. 1 boinc boinc      7986 Dec 16 17:22 run_atlas
[2025-12-16 23:12:56] -rw-r--r--. 1 boinc boinc       105 Dec 16 17:22 job.xml
[2025-12-16 23:12:56] -rw-r--r--. 2 boinc boinc 212227461 Dec 16 17:22 EVNT.47898779._000198.pool.root.1
[2025-12-16 23:12:56] -rw-r--r--. 2 boinc boinc     15847 Dec 16 17:22 start_atlas.sh
[2025-12-16 23:12:56] drwxrwx--x. 2 boinc boinc        68 Dec 16 17:22 shared
[2025-12-16 23:12:56] -rw-r--r--. 2 boinc boinc    592396 Dec 16 17:22 input.tar.gz
[2025-12-16 23:12:56] -rw-r--r--. 1 boinc boinc      6393 Dec 16 17:22 init_data.xml
[2025-12-16 23:12:56] -rw-r--r--. 1 boinc boinc         0 Dec 16 17:22 boinc_lockfile
[2025-12-16 23:12:56] -rw-r--r--. 1 boinc boinc      2522 Dec 16 17:22 pandaJob.out
[2025-12-16 23:12:56] -rw-------. 1 boinc boinc    987386 Dec 16 17:26 agis_schedconf.cvmfs.json
[2025-12-16 23:12:56] drwx------. 5 boinc boinc      4096 Dec 16 17:26 pilot3
[2025-12-16 23:12:56] -rw-------. 1 boinc boinc 202052658 Dec 16 23:09 HITS.47898782._004878.pool.root.1
[2025-12-16 23:12:56] -rw-r--r--. 1 boinc boinc       531 Dec 16 23:09 boinc_task_state.xml
[2025-12-16 23:12:56] -rw-------. 1 boinc boinc      1012 Dec 16 23:10 memory_monitor_summary.json
[2025-12-16 23:12:56] -rw-------. 1 boinc boinc   1516240 Dec 16 23:10 agis_ddmendpoints.agis.ALL.json
[2025-12-16 23:12:56] -rw-------. 1 boinc boinc    554743 Dec 16 23:10 log.47898782._004878.job.log.tgz.1
[2025-12-16 23:12:56] -rw-------. 1 boinc boinc      7770 Dec 16 23:12 heartbeat.json
[2025-12-16 23:12:56] -rw-------. 1 boinc boinc        95 Dec 16 23:12 pilot_heartbeat.json
[2025-12-16 23:12:56] -rw-r--r--. 1 boinc boinc      8192 Dec 16 23:12 boinc_mmap_file
[2025-12-16 23:12:56] -rw-r--r--. 1 boinc boinc        28 Dec 16 23:12 wrapper_checkpoint.txt
[2025-12-16 23:12:56] -rw-------. 1 boinc boinc      4883 Dec 16 23:12 pilotlog.txt
[2025-12-16 23:12:56] -rw-------. 1 boinc boinc   2772328 Dec 16 23:12 log.47898782._004878.job.log.1
[2025-12-16 23:12:56] -rw-------. 1 boinc boinc       357 Dec 16 23:12 output.list
[2025-12-16 23:12:56] -rw-r--r--. 1 boinc boinc       620 Dec 16 23:12 runtime_log
[2025-12-16 23:12:56] -rw-------. 1 boinc boinc   3348480 Dec 16 23:12 result.tar.gz
[2025-12-16 23:12:56] -rw-------. 1 boinc boinc       658 Dec 16 23:12 yxRKDmgOdp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWEVKDmYxmeMo.diag
[2025-12-16 23:12:56] -rw-r--r--. 1 boinc boinc      8817 Dec 16 23:12 runtime_log.err
[2025-12-16 23:12:56] -rw-r--r--. 1 boinc boinc     21061 Dec 16 23:12 stderr.txt
[2025-12-16 23:12:56] HITS file was successfully produced:
[2025-12-16 23:12:56] -rw-------. 1 boinc boinc 202052658 Dec 16 23:09 shared/HITS.pool.root.1
[2025-12-16 23:12:56]  *** Contents of shared directory: ***
[2025-12-16 23:12:56] total 408444
[2025-12-16 23:12:56] -rw-r--r--. 2 boinc boinc 212227461 Dec 16 17:22 ATLAS.root_0
[2025-12-16 23:12:56] -rw-r--r--. 2 boinc boinc     15847 Dec 16 17:22 start_atlas.sh
[2025-12-16 23:12:56] -rw-r--r--. 2 boinc boinc    592396 Dec 16 17:22 input.tar.gz
[2025-12-16 23:12:56] -rw-------. 1 boinc boinc 202052658 Dec 16 23:09 HITS.pool.root.1
[2025-12-16 23:12:56] -rw-------. 1 boinc boinc   3348480 Dec 16 23:12 result.tar.gz
23:12:58 (2899): run_atlas exited; CPU time 78741.336744
23:12:58 (2899): called boinc_finish(0)

</stderr_txt>
]]>

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